Wall clock time and date at job start Mon Mar 8 2021 04:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00356 * 2 1 4 4 H 1.09000 * 112.90779 * 341.24924 * 3 2 1 5 5 C 1.53779 * 113.61340 * 112.50076 * 3 2 1 6 6 C 1.53779 * 87.08287 * 139.98137 * 5 3 2 7 7 H 1.09003 * 113.69217 * 89.12246 * 6 5 3 8 8 N 1.46498 * 113.61523 * 220.01667 * 6 5 3 9 9 C 1.34774 * 119.99849 * 252.49470 * 8 6 5 10 10 O 1.21630 * 120.00464 * 0.02562 * 9 8 6 11 11 C 1.47194 * 119.99609 * 180.02562 * 9 8 6 12 12 C 1.36007 * 123.46146 * 0.02562 * 11 9 8 13 13 S 1.70452 * 110.81546 * 179.70519 * 12 11 9 14 14 C 1.75509 * 92.44289 * 0.35892 * 13 12 11 15 15 C 1.50694 * 124.70756 * 179.90503 * 14 13 12 16 16 O 1.42901 * 109.47118 * 244.69536 * 15 14 13 17 17 Si 1.86298 * 109.47775 * 4.69781 * 15 14 13 18 18 C 1.32763 * 110.57716 * 359.63965 * 14 13 12 19 19 C 1.53782 * 113.61433 * 209.99714 * 3 2 1 20 20 H 1.09004 * 109.46806 * 60.00059 * 1 2 3 21 21 H 1.08999 * 109.47392 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47392 * 300.00199 * 1 2 3 23 23 H 1.08998 * 113.61613 * 25.43015 * 5 3 2 24 24 H 1.09005 * 113.61414 * 254.53265 * 5 3 2 25 25 H 0.97001 * 120.00009 * 72.49988 * 8 6 5 26 26 H 1.07998 * 124.59484 * 0.02562 * 12 11 9 27 27 H 1.09004 * 109.47407 * 124.69893 * 15 14 13 28 28 H 0.96708 * 114.00246 * 180.02562 * 16 15 14 29 29 H 1.48506 * 109.99834 * 300.00486 * 17 15 14 30 30 H 1.48502 * 110.00011 * 61.31751 * 17 15 14 31 31 H 1.07998 * 123.45939 * 180.24565 * 18 14 13 32 32 H 1.09001 * 113.61335 * 105.47076 * 19 3 2 33 33 H 1.09002 * 113.69021 * 334.57614 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3144 2.0798 -0.3227 5 6 2.7535 1.6488 1.3018 6 6 3.8228 2.3180 0.4223 7 1 3.6237 3.3693 0.2143 8 7 5.1935 2.0784 0.8805 9 6 5.8951 3.0743 1.4569 10 8 5.3902 4.1720 1.5972 11 6 7.2725 2.8337 1.9168 12 6 7.9054 1.6360 1.7949 13 16 9.4872 1.7200 2.4243 14 6 9.2986 3.4054 2.8760 15 6 10.3621 4.2391 3.5430 16 8 9.9228 4.6151 4.8498 17 14 11.9344 3.2489 3.6774 18 6 8.0910 3.8454 2.5434 19 6 3.3757 1.3717 -0.7045 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.1166 0.7739 1.8411 24 1 2.2141 2.3476 1.9412 25 1 5.5962 1.2030 0.7690 26 1 7.4670 0.7530 1.3540 27 1 10.5466 5.1350 2.9500 28 1 10.5590 5.1552 5.3384 29 1 11.6962 2.0247 4.4836 30 1 12.4189 2.8788 2.3233 31 1 7.7550 4.8559 2.7233 32 1 3.3386 1.8469 -1.6847 33 1 3.9099 0.4217 -0.7145 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_6894386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:12:09 Heat of formation + Delta-G solvation = -47.820671 kcal Electronic energy + Delta-G solvation = -17948.053808 eV Core-core repulsion = 14875.333010 eV Total energy + Delta-G solvation = -3072.720798 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47304 -40.10830 -38.69845 -37.39408 -37.12929 -34.42411 -31.87011 -27.90334 -27.02381 -26.84517 -26.36433 -24.20932 -21.99796 -21.26665 -20.43670 -18.82723 -18.44823 -18.33611 -17.94114 -16.86471 -16.48171 -16.37640 -16.08054 -15.86221 -15.56478 -15.14838 -14.69891 -14.33370 -14.02958 -13.94991 -13.82203 -13.54760 -13.45479 -12.81261 -12.69453 -12.43564 -12.21993 -12.19010 -12.10117 -11.89729 -11.15258 -10.52676 -10.46908 -10.25853 -10.05259 -9.63147 -5.19583 -0.48179 0.26423 0.60211 0.71313 1.19023 1.60038 1.88097 1.95318 2.13017 2.89064 3.30818 3.38140 3.48281 3.68090 3.74076 3.77619 3.85132 3.93990 4.15358 4.27600 4.40815 4.48472 4.52099 4.58787 4.66025 4.66791 4.81890 4.85731 4.89763 4.90623 4.97354 5.05275 5.38067 6.21123 6.35305 6.83935 7.02102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.063 3.937 4 H 0.105 0.895 5 C -0.168 4.168 6 C 0.121 3.879 7 H 0.108 0.892 8 N -0.699 5.699 9 C 0.579 3.421 10 O -0.578 6.578 11 C -0.179 4.179 12 C -0.183 4.183 13 S 0.185 5.815 14 C -0.210 4.210 15 C -0.050 4.050 16 O -0.564 6.564 17 Si 0.760 3.240 18 C -0.070 4.070 19 C -0.132 4.132 20 H 0.053 0.947 21 H 0.093 0.907 22 H 0.046 0.954 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.414 0.586 26 H 0.205 0.795 27 H 0.101 0.899 28 H 0.406 0.594 29 H -0.271 1.271 30 H -0.263 1.263 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -1.712 -1.016 3.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.005 3.995 4 H 0.123 0.877 5 C -0.207 4.207 6 C 0.016 3.984 7 H 0.126 0.874 8 N -0.350 5.350 9 C 0.366 3.634 10 O -0.459 6.459 11 C -0.197 4.197 12 C -0.321 4.321 13 S 0.451 5.549 14 C -0.326 4.326 15 C -0.161 4.161 16 O -0.375 6.375 17 Si 0.661 3.339 18 C -0.100 4.100 19 C -0.170 4.170 20 H 0.072 0.928 21 H 0.112 0.888 22 H 0.065 0.935 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.252 0.748 26 H 0.222 0.778 27 H 0.119 0.881 28 H 0.258 0.742 29 H -0.197 1.197 30 H -0.189 1.189 31 H 0.162 0.838 32 H 0.112 0.888 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.211 -3.255 -1.151 5.446 hybrid contribution -1.950 1.054 -0.254 2.231 sum 2.261 -2.201 -1.405 3.454 Atomic orbital electron populations 1.22966 0.79780 1.03747 1.00819 1.87900 1.21227 1.27682 1.94652 1.23537 0.94260 0.85688 0.96052 0.87716 1.24002 0.97520 1.01095 0.98095 1.22237 0.79989 1.00378 0.95803 0.87422 1.45653 1.14753 1.14108 1.60480 1.17817 0.84836 0.83981 0.76739 1.90780 1.71760 1.25588 1.57775 1.20192 0.95854 0.94674 1.08974 1.26138 1.00059 1.01860 1.04075 1.83191 1.10803 1.06369 1.54531 1.23803 1.00218 0.98664 1.09946 1.24320 1.02304 1.02994 0.86530 1.86473 1.49187 1.75216 1.26597 0.93617 0.79116 0.79767 0.81356 1.21069 0.91872 1.00329 0.96680 1.23571 0.94998 1.00151 0.98312 0.92830 0.88847 0.93498 0.89045 0.91129 0.74798 0.77776 0.88128 0.74230 1.19685 1.18865 0.83832 0.88828 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.17 10.71 -148.98 -1.60 -2.77 16 3 C 0.06 -0.02 4.31 31.12 0.13 0.12 16 4 H 0.11 -0.30 7.87 -2.39 -0.02 -0.32 16 5 C -0.17 -0.23 7.71 31.12 0.24 0.01 16 6 C 0.12 0.17 4.24 45.52 0.19 0.36 16 7 H 0.11 0.49 7.46 -2.39 -0.02 0.47 16 8 N -0.70 -1.16 5.32 -443.52 -2.36 -3.52 16 9 C 0.58 5.14 7.79 86.60 0.67 5.82 16 10 O -0.58 -9.96 16.40 -4.13 -0.07 -10.03 16 11 C -0.18 -1.15 5.98 -19.87 -0.12 -1.27 16 12 C -0.18 -0.08 10.38 67.30 0.70 0.62 16 13 S 0.19 0.37 20.20 -56.49 -1.14 -0.77 16 14 C -0.21 -1.07 5.69 24.51 0.14 -0.93 16 15 C -0.05 0.02 2.93 71.23 0.21 0.23 16 16 O -0.56 -0.34 12.86 -148.98 -1.92 -2.25 16 17 Si 0.76 -2.72 30.92 68.60 2.12 -0.60 16 18 C -0.07 -0.59 9.95 22.67 0.23 -0.36 16 19 C -0.13 0.30 7.66 31.12 0.24 0.54 16 20 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 21 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 22 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 23 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 25 H 0.41 -1.85 7.22 -92.71 -0.67 -2.52 16 26 H 0.21 -1.52 7.01 -2.91 -0.02 -1.54 16 27 H 0.10 -0.40 7.96 -2.38 -0.02 -0.42 16 28 H 0.41 -4.25 8.74 -74.05 -0.65 -4.90 16 29 H -0.27 -0.70 7.11 99.48 0.71 0.01 16 30 H -0.26 -0.11 7.11 99.48 0.71 0.60 16 31 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.10 -0.35 8.12 -2.39 -0.02 -0.37 16 Total: 0.00 -20.65 299.41 -1.23 -21.88 By element: Atomic # 1 Polarization: -8.13 SS G_CDS: -0.14 Total: -8.27 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 3.86 Total: 6.33 kcal Atomic # 7 Polarization: -1.16 SS G_CDS: -2.36 Total: -3.52 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -3.58 Total: -15.05 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.12 Total: -0.60 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.14 Total: -0.77 kcal Total: -20.65 -1.23 -21.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_6894386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.940 kcal (2) G-P(sol) polarization free energy of solvation -20.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds