Wall clock time and date at job start Mon Mar 8 2021 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99884 * 2 1 4 4 H 1.08999 * 112.85423 * 18.80054 * 3 2 1 5 5 C 1.53782 * 113.61102 * 150.00484 * 3 2 1 6 6 C 1.53784 * 87.08286 * 140.06318 * 5 3 2 7 7 H 1.09001 * 113.61548 * 89.19218 * 6 5 3 8 8 N 1.46500 * 113.61548 * 220.01716 * 6 5 3 9 9 C 1.34777 * 119.99978 * 204.99582 * 8 6 5 10 10 O 1.21548 * 119.99797 * 0.02562 * 9 8 6 11 11 C 1.47839 * 119.99754 * 180.02562 * 9 8 6 12 12 C 1.39556 * 120.15046 * 6.22591 * 11 9 8 13 13 C 1.37975 * 119.85789 * 179.72665 * 12 11 9 14 14 C 1.50700 * 119.92936 * 180.23342 * 13 12 11 15 15 O 1.42901 * 109.46940 * 254.99966 * 14 13 12 16 16 Si 1.86303 * 109.46996 * 14.99874 * 14 13 12 17 17 C 1.38335 * 120.14402 * 0.25320 * 13 12 11 18 18 C 1.50703 * 119.85569 * 179.97438 * 17 13 12 19 19 C 1.38383 * 120.29134 * 0.02562 * 17 13 12 20 20 C 1.37932 * 120.14899 * 359.97438 * 19 17 13 21 21 C 1.50693 * 120.07710 * 179.97438 * 20 19 17 22 22 C 1.53780 * 87.08064 * 334.56445 * 6 5 3 23 23 H 1.08997 * 109.46953 * 300.00195 * 1 2 3 24 24 H 1.09005 * 109.47366 * 59.99700 * 1 2 3 25 25 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 26 26 H 1.08997 * 113.61713 * 25.51258 * 5 3 2 27 27 H 1.08998 * 113.68920 * 254.61692 * 5 3 2 28 28 H 0.97000 * 119.99631 * 24.99683 * 8 6 5 29 29 H 1.08002 * 120.06516 * 0.02562 * 12 11 9 30 30 H 1.08994 * 109.46972 * 135.00045 * 14 13 12 31 31 H 0.96702 * 113.99931 * 59.99995 * 15 14 13 32 32 H 1.48497 * 109.99796 * 58.68094 * 16 14 13 33 33 H 1.48503 * 109.99649 * 180.02562 * 16 14 13 34 34 H 1.08996 * 109.46830 * 90.00167 * 18 17 13 35 35 H 1.08995 * 109.47258 * 210.00388 * 18 17 13 36 36 H 1.09004 * 109.46916 * 330.00100 * 18 17 13 37 37 H 1.08000 * 119.92553 * 179.97438 * 19 17 13 38 38 H 1.09005 * 109.47288 * 96.57868 * 21 20 19 39 39 H 1.08999 * 109.47443 * 216.57834 * 21 20 19 40 40 H 1.09006 * 109.47546 * 336.57563 * 21 20 19 41 41 H 1.08998 * 113.61716 * 139.97684 * 22 6 5 42 42 H 1.09000 * 113.61688 * 270.88858 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3756 1.3718 0.7044 6 6 3.8221 2.3199 -0.4211 7 1 3.6222 3.3707 -0.2118 8 7 5.1929 2.0818 -0.8797 9 6 5.8938 3.0790 -1.4549 10 8 5.3886 4.1759 -1.5928 11 6 7.2770 2.8385 -1.9182 12 6 7.8149 1.5514 -1.8810 13 6 9.1045 1.3329 -2.3201 14 6 9.6852 -0.0574 -2.2856 15 8 10.6138 -0.1590 -1.2042 16 14 8.3150 -1.2968 -2.0462 17 6 9.8658 2.3872 -2.7916 18 6 11.2739 2.1413 -3.2691 19 6 9.3405 3.6670 -2.8258 20 6 8.0527 3.8991 -2.3898 21 6 7.4825 5.2935 -2.4272 22 6 2.7532 1.6511 -1.3014 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.9095 0.4216 0.7124 27 1 3.3396 1.8454 1.6855 28 1 5.5961 1.2065 -0.7693 29 1 7.2212 0.7272 -1.5138 30 1 10.1985 -0.2601 -3.2255 31 1 10.2251 0.0096 -0.3349 32 1 7.3259 -1.1795 -3.1475 33 1 8.8748 -2.6718 -2.0098 34 1 11.2613 1.9113 -4.3345 35 1 11.8769 3.0328 -3.0970 36 1 11.7020 1.3018 -2.7212 37 1 9.9403 4.4859 -3.1947 38 1 6.8937 5.4211 -3.3357 39 1 6.8454 5.4491 -1.5566 40 1 8.2958 6.0192 -2.4164 41 1 2.2132 2.3503 -1.9398 42 1 3.1168 0.7771 -1.8418 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_9599494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:12:17 Heat of formation + Delta-G solvation = -60.340658 kcal Electronic energy + Delta-G solvation = -23632.936582 eV Core-core repulsion = 20159.445392 eV Total energy + Delta-G solvation = -3473.491190 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74353 -40.70796 -39.54007 -37.73232 -37.21506 -34.66565 -34.35455 -32.96783 -29.35639 -28.62997 -27.79148 -26.81906 -25.75164 -24.92444 -23.64089 -22.22180 -21.41261 -20.66642 -18.98537 -18.27407 -17.54976 -17.17404 -16.75366 -16.55290 -16.24999 -16.23683 -15.92344 -15.73871 -15.52219 -15.06625 -14.75938 -14.65928 -14.43635 -14.13087 -13.91009 -13.55195 -13.49913 -13.32276 -13.07436 -12.88884 -12.74975 -12.59122 -12.52511 -12.20650 -12.15213 -12.09579 -11.91086 -11.88294 -10.61001 -10.51301 -10.47881 -10.09497 -9.89719 -9.58278 -5.16843 -0.21972 0.17066 1.19245 1.55156 1.80386 1.90381 2.03117 2.67343 2.86519 3.36416 3.37956 3.46350 3.49371 3.58226 3.67551 3.76761 3.80392 3.83688 4.13467 4.19977 4.25235 4.40356 4.42025 4.42980 4.51732 4.53424 4.63835 4.64792 4.66196 4.73754 4.75058 4.86201 4.86937 4.92734 4.93748 5.02147 5.05757 5.11849 5.29398 5.46688 5.50038 5.57864 5.81344 6.18845 6.44923 6.48548 7.19630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.064 3.936 4 H 0.093 0.907 5 C -0.144 4.144 6 C 0.125 3.875 7 H 0.121 0.879 8 N -0.716 5.716 9 C 0.562 3.438 10 O -0.527 6.527 11 C -0.147 4.147 12 C -0.071 4.071 13 C -0.138 4.138 14 C -0.063 4.063 15 O -0.537 6.537 16 Si 0.672 3.328 17 C -0.024 4.024 18 C -0.130 4.130 19 C -0.133 4.133 20 C -0.008 4.008 21 C -0.123 4.123 22 C -0.170 4.170 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.400 0.600 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.379 0.621 32 H -0.253 1.253 33 H -0.250 1.250 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 -0.848 2.393 2.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.005 3.995 4 H 0.111 0.889 5 C -0.182 4.182 6 C 0.020 3.980 7 H 0.139 0.861 8 N -0.367 5.367 9 C 0.351 3.649 10 O -0.405 6.405 11 C -0.150 4.150 12 C -0.089 4.089 13 C -0.138 4.138 14 C -0.174 4.174 15 O -0.342 6.342 16 Si 0.573 3.427 17 C -0.024 4.024 18 C -0.186 4.186 19 C -0.151 4.151 20 C -0.009 4.009 21 C -0.179 4.179 22 C -0.209 4.209 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.236 0.764 29 H 0.144 0.856 30 H 0.132 0.868 31 H 0.227 0.773 32 H -0.178 1.178 33 H -0.175 1.175 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.301 -1.066 1.477 2.238 hybrid contribution 0.291 0.033 -0.464 0.549 sum -1.010 -1.032 1.013 1.764 Atomic orbital electron populations 1.22829 0.80750 1.03059 1.00144 1.87938 1.20000 1.26853 1.94557 1.23453 0.93775 0.85807 0.96462 0.88936 1.23635 0.95668 1.00433 0.98501 1.22225 0.80250 1.00634 0.94874 0.86100 1.45842 1.14838 1.14187 1.61854 1.18253 0.85310 0.84177 0.77175 1.90746 1.70589 1.23315 1.55822 1.19620 0.94550 0.93944 1.06844 1.20990 0.94529 0.95485 0.97886 1.20050 0.94295 0.96362 1.03138 1.24973 1.01057 0.98015 0.93346 1.86504 1.37312 1.93372 1.17051 0.95169 0.79106 0.78740 0.89635 1.20007 0.96073 0.92306 0.94002 1.21014 0.92066 1.03873 1.01655 1.21055 0.95234 0.96858 1.01947 1.20098 0.92783 0.95733 0.92282 1.21118 1.01043 0.90826 1.04962 1.24034 0.97510 1.01469 0.97848 0.93792 0.93868 0.89473 0.88357 0.89827 0.76376 0.85596 0.86762 0.77332 1.17780 1.17456 0.90756 0.91013 0.89596 0.84939 0.90389 0.88549 0.92117 0.90539 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.06 16 2 O -0.38 -0.35 10.72 -35.23 -0.38 -0.72 16 3 C 0.06 -0.06 4.31 -25.91 -0.11 -0.17 16 4 H 0.09 -0.19 7.87 -51.93 -0.41 -0.60 16 5 C -0.14 0.28 7.66 -25.92 -0.20 0.08 16 6 C 0.13 -0.10 4.24 -67.12 -0.28 -0.38 16 7 H 0.12 0.02 7.46 -51.93 -0.39 -0.37 16 8 N -0.72 0.48 5.30 -53.96 -0.29 0.19 16 9 C 0.56 1.13 7.70 -12.33 -0.09 1.03 16 10 O -0.53 -2.54 12.96 5.32 0.07 -2.47 16 11 C -0.15 -0.19 5.87 -104.97 -0.62 -0.81 16 12 C -0.07 0.04 8.13 -39.19 -0.32 -0.28 16 13 C -0.14 0.02 5.25 -104.68 -0.55 -0.53 16 14 C -0.06 0.05 1.88 36.01 0.07 0.12 16 15 O -0.54 0.40 11.91 -35.23 -0.42 -0.02 16 16 Si 0.67 -1.05 29.91 -169.99 -5.08 -6.13 16 17 C -0.02 -0.01 5.89 -104.53 -0.62 -0.63 16 18 C -0.13 0.08 9.32 36.01 0.34 0.41 16 19 C -0.13 -0.10 9.31 -39.64 -0.37 -0.47 16 20 C -0.01 -0.01 5.91 -104.23 -0.62 -0.63 16 21 C -0.12 -0.20 8.72 36.00 0.31 0.11 16 22 C -0.17 0.09 7.71 -25.91 -0.20 -0.11 16 23 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 24 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 25 H 0.09 -0.16 8.14 -51.93 -0.42 -0.59 16 26 H 0.10 -0.24 8.12 -51.93 -0.42 -0.66 16 27 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.40 -1.25 6.80 -40.82 -0.28 -1.53 16 29 H 0.13 -0.42 3.52 -52.49 -0.18 -0.60 16 30 H 0.12 -0.05 7.38 -51.93 -0.38 -0.43 16 31 H 0.38 -1.67 8.70 45.56 0.40 -1.27 16 32 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 33 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 35 H 0.07 -0.09 8.08 -51.93 -0.42 -0.51 16 36 H 0.09 0.00 6.18 -51.93 -0.32 -0.32 16 37 H 0.13 -0.10 8.06 -52.49 -0.42 -0.53 16 38 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.10 0.30 5.88 -51.93 -0.31 -0.01 16 40 H 0.06 0.01 8.04 -51.93 -0.42 -0.41 16 41 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 42 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 LS Contribution 338.99 15.07 5.11 5.11 Total: 0.00 -6.93 338.99 -9.29 -16.21 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: -6.13 Total: -11.00 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.16 Total: -1.18 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.29 Total: 0.19 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: -0.73 Total: -3.21 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: -5.08 Total: -6.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -6.93 -9.29 -16.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_9599494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.126 kcal (2) G-P(sol) polarization free energy of solvation -6.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds