Wall clock time and date at job start Mon Mar 8 2021 04:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99884 * 2 1 4 4 H 1.08999 * 112.85423 * 18.80054 * 3 2 1 5 5 C 1.53782 * 113.61102 * 150.00484 * 3 2 1 6 6 C 1.53784 * 87.08286 * 140.06318 * 5 3 2 7 7 H 1.09001 * 113.61548 * 89.19218 * 6 5 3 8 8 N 1.46500 * 113.61548 * 220.01716 * 6 5 3 9 9 C 1.34777 * 119.99978 * 204.99582 * 8 6 5 10 10 O 1.21548 * 119.99797 * 0.02562 * 9 8 6 11 11 C 1.47839 * 119.99754 * 180.02562 * 9 8 6 12 12 C 1.39556 * 120.15046 * 6.22591 * 11 9 8 13 13 C 1.37975 * 119.85789 * 179.72665 * 12 11 9 14 14 C 1.50700 * 119.92936 * 180.23342 * 13 12 11 15 15 O 1.42901 * 109.46940 * 254.99966 * 14 13 12 16 16 Si 1.86303 * 109.46996 * 14.99874 * 14 13 12 17 17 C 1.38335 * 120.14402 * 0.25320 * 13 12 11 18 18 C 1.50703 * 119.85569 * 179.97438 * 17 13 12 19 19 C 1.38383 * 120.29134 * 0.02562 * 17 13 12 20 20 C 1.37932 * 120.14899 * 359.97438 * 19 17 13 21 21 C 1.50693 * 120.07710 * 179.97438 * 20 19 17 22 22 C 1.53780 * 87.08064 * 334.56445 * 6 5 3 23 23 H 1.08997 * 109.46953 * 300.00195 * 1 2 3 24 24 H 1.09005 * 109.47366 * 59.99700 * 1 2 3 25 25 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 26 26 H 1.08997 * 113.61713 * 25.51258 * 5 3 2 27 27 H 1.08998 * 113.68920 * 254.61692 * 5 3 2 28 28 H 0.97000 * 119.99631 * 24.99683 * 8 6 5 29 29 H 1.08002 * 120.06516 * 0.02562 * 12 11 9 30 30 H 1.08994 * 109.46972 * 135.00045 * 14 13 12 31 31 H 0.96702 * 113.99931 * 59.99995 * 15 14 13 32 32 H 1.48497 * 109.99796 * 58.68094 * 16 14 13 33 33 H 1.48503 * 109.99649 * 180.02562 * 16 14 13 34 34 H 1.08996 * 109.46830 * 90.00167 * 18 17 13 35 35 H 1.08995 * 109.47258 * 210.00388 * 18 17 13 36 36 H 1.09004 * 109.46916 * 330.00100 * 18 17 13 37 37 H 1.08000 * 119.92553 * 179.97438 * 19 17 13 38 38 H 1.09005 * 109.47288 * 96.57868 * 21 20 19 39 39 H 1.08999 * 109.47443 * 216.57834 * 21 20 19 40 40 H 1.09006 * 109.47546 * 336.57563 * 21 20 19 41 41 H 1.08998 * 113.61716 * 139.97684 * 22 6 5 42 42 H 1.09000 * 113.61688 * 270.88858 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3756 1.3718 0.7044 6 6 3.8221 2.3199 -0.4211 7 1 3.6222 3.3707 -0.2118 8 7 5.1929 2.0818 -0.8797 9 6 5.8938 3.0790 -1.4549 10 8 5.3886 4.1759 -1.5928 11 6 7.2770 2.8385 -1.9182 12 6 7.8149 1.5514 -1.8810 13 6 9.1045 1.3329 -2.3201 14 6 9.6852 -0.0574 -2.2856 15 8 10.6138 -0.1590 -1.2042 16 14 8.3150 -1.2968 -2.0462 17 6 9.8658 2.3872 -2.7916 18 6 11.2739 2.1413 -3.2691 19 6 9.3405 3.6670 -2.8258 20 6 8.0527 3.8991 -2.3898 21 6 7.4825 5.2935 -2.4272 22 6 2.7532 1.6511 -1.3014 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.9095 0.4216 0.7124 27 1 3.3396 1.8454 1.6855 28 1 5.5961 1.2065 -0.7693 29 1 7.2212 0.7272 -1.5138 30 1 10.1985 -0.2601 -3.2255 31 1 10.2251 0.0096 -0.3349 32 1 7.3259 -1.1795 -3.1475 33 1 8.8748 -2.6718 -2.0098 34 1 11.2613 1.9113 -4.3345 35 1 11.8769 3.0328 -3.0970 36 1 11.7020 1.3018 -2.7212 37 1 9.9403 4.4859 -3.1947 38 1 6.8937 5.4211 -3.3357 39 1 6.8454 5.4491 -1.5566 40 1 8.2958 6.0192 -2.4164 41 1 2.2132 2.3503 -1.9398 42 1 3.1168 0.7771 -1.8418 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_9599494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:12:16 Heat of formation + Delta-G solvation = -58.255589 kcal Electronic energy + Delta-G solvation = -23632.846167 eV Core-core repulsion = 20159.445392 eV Total energy + Delta-G solvation = -3473.400775 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78588 -40.67178 -39.58307 -37.68336 -37.21041 -34.71144 -34.37486 -32.96543 -29.38252 -28.63094 -27.69930 -26.72759 -25.74152 -24.90138 -23.63314 -22.24977 -21.42181 -20.64534 -18.97739 -18.24697 -17.52878 -17.16990 -16.68920 -16.58029 -16.22612 -16.21156 -15.90106 -15.78066 -15.49922 -15.06129 -14.75746 -14.65583 -14.45139 -14.18335 -13.92469 -13.50840 -13.43661 -13.31013 -13.06806 -12.88477 -12.72394 -12.59650 -12.51224 -12.17776 -12.13527 -12.08098 -11.88336 -11.81033 -10.72717 -10.45333 -10.43131 -10.14623 -9.90532 -9.61255 -5.08638 -0.26832 0.16109 1.26819 1.60049 1.72726 1.94823 2.03175 2.63008 2.95361 3.44154 3.45646 3.52454 3.57426 3.63361 3.72319 3.80985 3.84073 3.91895 4.14821 4.22120 4.33907 4.45838 4.50527 4.54139 4.56230 4.56324 4.67068 4.74286 4.75170 4.76172 4.78831 4.87360 4.89138 4.96901 4.98740 5.03461 5.06486 5.14887 5.25838 5.46641 5.48725 5.53081 5.79319 6.27614 6.46571 6.76999 7.13881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.061 3.939 4 H 0.103 0.897 5 C -0.133 4.133 6 C 0.124 3.876 7 H 0.110 0.890 8 N -0.704 5.704 9 C 0.558 3.442 10 O -0.562 6.562 11 C -0.159 4.159 12 C -0.064 4.064 13 C -0.140 4.140 14 C -0.066 4.066 15 O -0.549 6.549 16 Si 0.760 3.240 17 C -0.031 4.031 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.025 4.025 21 C -0.118 4.118 22 C -0.170 4.170 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.413 0.587 29 H 0.151 0.849 30 H 0.110 0.890 31 H 0.396 0.604 32 H -0.286 1.286 33 H -0.294 1.294 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -1.526 3.046 3.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.002 3.998 4 H 0.120 0.880 5 C -0.171 4.171 6 C 0.019 3.981 7 H 0.128 0.872 8 N -0.355 5.355 9 C 0.348 3.652 10 O -0.443 6.443 11 C -0.162 4.162 12 C -0.082 4.082 13 C -0.141 4.141 14 C -0.176 4.176 15 O -0.357 6.357 16 Si 0.666 3.334 17 C -0.032 4.032 18 C -0.184 4.184 19 C -0.156 4.156 20 C -0.026 4.026 21 C -0.174 4.174 22 C -0.209 4.209 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.251 0.749 29 H 0.168 0.832 30 H 0.128 0.872 31 H 0.246 0.754 32 H -0.213 1.213 33 H -0.221 1.221 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.162 0.838 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.991 -1.751 2.161 2.953 hybrid contribution 0.207 0.195 -0.694 0.750 sum -0.784 -1.557 1.467 2.278 Atomic orbital electron populations 1.22947 0.79953 1.03649 1.00720 1.87901 1.21042 1.27775 1.94659 1.23562 0.94403 0.85571 0.96252 0.87965 1.23588 0.94770 1.00397 0.98343 1.22200 0.80000 1.00386 0.95561 0.87239 1.45770 1.14741 1.14278 1.60759 1.18439 0.85666 0.84087 0.77038 1.90731 1.71369 1.24752 1.57410 1.19688 0.94312 0.94718 1.07515 1.21171 0.94534 0.95422 0.97068 1.20189 0.94387 0.96620 1.02873 1.25057 1.01323 0.97762 0.93450 1.86475 1.37825 1.93347 1.18038 0.94191 0.76444 0.75292 0.87512 1.20229 0.96678 0.92378 0.93881 1.21011 0.91480 1.04017 1.01847 1.21198 0.94993 0.97498 1.01880 1.20221 0.93428 0.95786 0.93132 1.21017 1.01055 0.91617 1.03705 1.24017 0.97701 1.01119 0.98070 0.92888 0.93633 0.88956 0.87485 0.88792 0.74868 0.83183 0.87217 0.75441 1.21254 1.22148 0.90219 0.90291 0.90058 0.83752 0.91359 0.90194 0.90786 0.91296 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.39 -0.61 10.72 -148.98 -1.60 -2.20 16 3 C 0.06 -0.12 4.31 31.12 0.13 0.01 16 4 H 0.10 -0.44 7.87 -2.39 -0.02 -0.46 16 5 C -0.13 0.62 7.66 31.12 0.24 0.86 16 6 C 0.12 -0.17 4.24 45.52 0.19 0.03 16 7 H 0.11 0.15 7.46 -2.39 -0.02 0.13 16 8 N -0.70 0.92 5.30 -442.91 -2.35 -1.43 16 9 C 0.56 2.70 7.70 86.78 0.67 3.37 16 10 O -0.56 -6.39 12.96 -3.87 -0.05 -6.44 16 11 C -0.16 -0.48 5.87 -20.09 -0.12 -0.60 16 12 C -0.06 0.11 8.13 22.53 0.18 0.30 16 13 C -0.14 0.12 5.25 -19.90 -0.10 0.01 16 14 C -0.07 0.16 1.88 71.24 0.13 0.29 16 15 O -0.55 1.36 11.91 -148.98 -1.78 -0.42 16 16 Si 0.76 -2.82 29.91 68.60 2.05 -0.77 16 17 C -0.03 -0.02 5.89 -19.81 -0.12 -0.14 16 18 C -0.13 0.22 9.32 71.24 0.66 0.88 16 19 C -0.14 -0.22 9.31 22.23 0.21 -0.01 16 20 C -0.02 -0.10 5.91 -19.61 -0.12 -0.22 16 21 C -0.12 -0.55 8.72 71.23 0.62 0.07 16 22 C -0.17 0.11 7.71 31.12 0.24 0.35 16 23 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.04 -0.15 8.14 -2.38 -0.02 -0.17 16 25 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H 0.11 -0.66 8.12 -2.39 -0.02 -0.68 16 27 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.41 -2.93 6.80 -92.71 -0.63 -3.56 16 29 H 0.15 -1.19 3.52 -2.91 -0.01 -1.20 16 30 H 0.11 -0.15 7.38 -2.39 -0.02 -0.16 16 31 H 0.40 -4.05 8.70 -74.06 -0.64 -4.69 16 32 H -0.29 -0.53 7.11 99.48 0.71 0.18 16 33 H -0.29 -1.12 7.11 99.48 0.71 -0.41 16 34 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.08 -0.25 8.08 -2.39 -0.02 -0.27 16 36 H 0.08 -0.04 6.18 -2.39 -0.01 -0.06 16 37 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 38 H 0.07 0.41 8.14 -2.38 -0.02 0.40 16 39 H 0.08 0.66 5.88 -2.39 -0.01 0.64 16 40 H 0.07 0.08 8.04 -2.38 -0.02 0.06 16 41 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -17.04 338.99 0.15 -16.89 By element: Atomic # 1 Polarization: -11.82 SS G_CDS: -0.19 Total: -12.01 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.06 Total: 6.37 kcal Atomic # 7 Polarization: 0.92 SS G_CDS: -2.35 Total: -1.43 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -3.42 Total: -9.06 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.05 Total: -0.77 kcal Total: -17.04 0.15 -16.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_9599494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.361 kcal (2) G-P(sol) polarization free energy of solvation -17.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds