Wall clock time and date at job start Mon Mar 8 2021 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99876 * 2 1 4 4 H 1.08999 * 112.84958 * 341.19816 * 3 2 1 5 5 C 1.53781 * 113.69234 * 112.46423 * 3 2 1 6 6 C 1.54049 * 87.08031 * 139.98721 * 5 3 2 7 7 H 1.09000 * 113.61076 * 89.06984 * 6 5 3 8 8 N 1.46494 * 113.69866 * 220.05561 * 6 5 3 9 9 C 1.34779 * 119.99525 * 252.42298 * 8 6 5 10 10 O 1.21281 * 120.00328 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99749 * 179.97438 * 9 8 6 12 12 N 1.46492 * 109.47193 * 179.97438 * 11 9 8 13 13 C 1.36838 * 125.06465 * 265.02303 * 12 11 9 14 14 C 1.34235 * 109.93779 * 179.97438 * 13 12 11 15 15 C 1.50704 * 126.49939 * 179.97438 * 14 13 12 16 16 O 1.42908 * 109.46623 * 105.03076 * 15 14 13 17 17 Si 1.86302 * 109.46998 * 345.03686 * 15 14 13 18 18 C 1.46491 * 107.00304 * 0.02562 * 14 13 12 19 19 C 1.39585 * 134.04118 * 179.97438 * 18 14 13 20 20 C 1.36669 * 119.76709 * 179.23642 * 19 18 14 21 21 C 1.38795 * 120.52163 * 0.66210 * 20 19 18 22 22 C 1.37785 * 120.66933 * 359.57521 * 21 20 19 23 23 C 1.37689 * 125.06270 * 84.72228 * 12 11 9 24 24 C 1.53781 * 113.61457 * 209.99995 * 3 2 1 25 25 H 1.08999 * 109.47260 * 299.99442 * 1 2 3 26 26 H 1.09002 * 109.47321 * 60.00253 * 1 2 3 27 27 H 1.09011 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.09005 * 113.61471 * 254.54303 * 5 3 2 29 29 H 1.08996 * 113.61178 * 25.35646 * 5 3 2 30 30 H 0.97000 * 120.00537 * 72.42383 * 8 6 5 31 31 H 1.09001 * 109.46833 * 300.00001 * 11 9 8 32 32 H 1.09005 * 109.47003 * 59.99764 * 11 9 8 33 33 H 1.08001 * 125.02860 * 0.02960 * 13 12 11 34 34 H 1.09000 * 109.47608 * 225.02641 * 15 14 13 35 35 H 0.96700 * 114.00009 * 300.00604 * 16 15 14 36 36 H 1.48506 * 109.99657 * 179.97438 * 17 15 14 37 37 H 1.48494 * 109.99722 * 301.31104 * 17 15 14 38 38 H 1.08012 * 120.11710 * 359.97438 * 19 18 14 39 39 H 1.07998 * 119.73555 * 180.25913 * 20 19 18 40 40 H 1.07996 * 119.66308 * 179.55706 * 21 20 19 41 41 H 1.07993 * 120.11549 * 179.97438 * 22 21 20 42 42 H 1.09002 * 113.61445 * 334.48406 * 24 3 2 43 43 H 1.09002 * 113.61408 * 105.30136 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0788 -0.3237 5 6 2.7531 1.6511 1.3013 6 6 3.8238 2.3210 0.4194 7 1 3.6222 3.3715 0.2100 8 7 5.1955 2.0834 0.8758 9 6 5.8972 3.0812 1.4489 10 8 5.3934 4.1758 1.5863 11 6 7.3081 2.8367 1.9190 12 7 7.8494 4.0677 2.5001 13 6 8.6100 4.9858 1.8286 14 6 8.9413 5.9944 2.6501 15 6 9.7709 7.2021 2.2975 16 8 8.9195 8.3420 2.1633 17 14 10.6587 6.8973 0.6883 18 6 8.3447 5.6979 3.9548 19 6 8.3338 6.3517 5.1880 20 6 7.6522 5.8059 6.2393 21 6 6.9817 4.5993 6.0946 22 6 6.9836 3.9346 4.8877 23 6 7.6637 4.4760 3.8019 24 6 3.3755 1.3719 -0.7045 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 2.2131 2.3504 1.9398 29 1 3.1155 0.7771 1.8425 30 1 5.5986 1.2081 0.7656 31 1 7.3087 2.0482 2.6715 32 1 7.9252 2.5326 1.0734 33 1 8.9000 4.9106 0.7910 34 1 10.5007 7.3847 3.0863 35 1 8.2438 8.2497 1.4777 36 1 11.4799 8.0814 0.3291 37 1 11.5233 5.6957 0.8050 38 1 8.8522 7.2917 5.3076 39 1 7.6406 6.3143 7.1921 40 1 6.4535 4.1770 6.9366 41 1 6.4593 2.9960 4.7852 42 1 3.9094 0.4216 -0.7125 43 1 3.3378 1.8445 -1.6860 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:12:19 Heat of formation + Delta-G solvation = -10.294753 kcal Electronic energy + Delta-G solvation = -26187.222844 eV Core-core repulsion = 22394.023616 eV Total energy + Delta-G solvation = -3793.199229 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53448 -41.15263 -39.79846 -38.10920 -37.65781 -37.20994 -34.44249 -33.84065 -31.44170 -30.24086 -29.06377 -27.75037 -26.76268 -26.01796 -24.69541 -23.68379 -22.66149 -21.69001 -21.07413 -20.61517 -18.62092 -18.43629 -18.13675 -17.64581 -17.21698 -16.78832 -16.49899 -16.40509 -16.18966 -15.89066 -15.88010 -15.42614 -15.24410 -14.96171 -14.75643 -14.70432 -14.33368 -14.05037 -13.74326 -13.54305 -13.47355 -13.11107 -12.77320 -12.73625 -12.57237 -12.23984 -12.21752 -12.13780 -12.10784 -11.86772 -11.81414 -11.10758 -10.56124 -10.48766 -10.29957 -10.11302 -9.16655 -8.63232 -4.99078 0.13192 0.62014 1.37392 1.40975 1.45965 1.69379 1.71631 2.00896 2.18907 2.89861 2.95737 3.42486 3.51760 3.58421 3.67863 3.69195 3.74815 3.80621 3.88221 3.89327 4.04970 4.16974 4.20467 4.29075 4.30413 4.47519 4.50540 4.53079 4.55326 4.70908 4.71343 4.72335 4.77688 4.84414 4.87410 4.94286 4.95498 5.02722 5.12143 5.45862 5.49118 5.64478 5.72156 5.74591 6.19700 6.22565 6.24580 6.49310 6.82667 7.14551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.057 3.943 4 H 0.099 0.901 5 C -0.168 4.168 6 C 0.126 3.874 7 H 0.102 0.898 8 N -0.700 5.700 9 C 0.494 3.506 10 O -0.569 6.569 11 C 0.087 3.913 12 N -0.467 5.467 13 C 0.080 3.920 14 C -0.225 4.225 15 C -0.047 4.047 16 O -0.564 6.564 17 Si 0.796 3.204 18 C -0.118 4.118 19 C -0.091 4.091 20 C -0.154 4.154 21 C -0.109 4.109 22 C -0.133 4.133 23 C 0.090 3.910 24 C -0.130 4.130 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.421 0.579 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.210 0.790 34 H 0.091 0.909 35 H 0.390 0.610 36 H -0.301 1.301 37 H -0.274 1.274 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 -7.402 -5.384 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C -0.001 4.001 4 H 0.117 0.883 5 C -0.207 4.207 6 C 0.021 3.979 7 H 0.120 0.880 8 N -0.353 5.353 9 C 0.280 3.720 10 O -0.447 6.447 11 C -0.037 4.037 12 N -0.149 5.149 13 C -0.045 4.045 14 C -0.233 4.233 15 C -0.156 4.156 16 O -0.372 6.372 17 Si 0.700 3.300 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.173 4.173 21 C -0.128 4.128 22 C -0.154 4.154 23 C -0.015 4.015 24 C -0.168 4.168 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.259 0.741 31 H 0.158 0.842 32 H 0.185 0.815 33 H 0.226 0.774 34 H 0.109 0.891 35 H 0.240 0.760 36 H -0.229 1.229 37 H -0.201 1.201 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.150 0.850 42 H 0.124 0.876 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.077 -6.936 -5.360 8.832 hybrid contribution -0.317 0.160 1.077 1.134 sum -1.394 -6.776 -4.284 8.137 Atomic orbital electron populations 1.22951 0.79928 1.03699 1.00697 1.87896 1.21066 1.27771 1.94681 1.23576 0.94488 0.85506 0.96526 0.88330 1.24037 0.97727 1.01056 0.97891 1.22119 0.80647 0.99826 0.95344 0.87978 1.45737 1.14244 1.14562 1.60719 1.21440 0.88900 0.84370 0.77304 1.90800 1.71759 1.25953 1.56194 1.22001 0.91930 0.86082 1.03732 1.43461 1.43930 1.20041 1.07471 1.22097 0.95112 0.88742 0.98552 1.20801 1.09325 0.99938 0.93196 1.24711 0.95772 0.84027 1.11112 1.86442 1.49690 1.38430 1.62612 0.93973 0.80517 0.76945 0.78596 1.19388 1.02262 0.95765 0.94816 1.20449 0.99372 0.99345 0.91827 1.20911 0.99796 0.97229 0.99359 1.21120 0.99345 0.95161 0.97178 1.20246 1.02038 1.01692 0.91410 1.18389 1.01091 0.95761 0.86247 1.23545 0.94655 1.00318 0.98295 0.93641 0.92950 0.88867 0.91797 0.88792 0.74109 0.84190 0.81527 0.77360 0.89107 0.76026 1.22936 1.20061 0.86592 0.84667 0.83742 0.85003 0.87589 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.40 -0.33 10.72 -148.98 -1.60 -1.93 16 3 C 0.06 -0.16 4.31 31.12 0.13 -0.03 16 4 H 0.10 -0.44 7.87 -2.39 -0.02 -0.46 16 5 C -0.17 0.38 7.73 31.21 0.24 0.62 16 6 C 0.13 -0.48 4.25 45.61 0.19 -0.28 16 7 H 0.10 0.04 7.47 -2.39 -0.02 0.02 16 8 N -0.70 4.90 5.36 -439.60 -2.36 2.55 16 9 C 0.49 -0.87 7.90 87.66 0.69 -0.18 16 10 O -0.57 -5.46 16.02 -3.03 -0.05 -5.50 16 11 C 0.09 -0.66 6.48 85.64 0.56 -0.10 16 12 N -0.47 -0.67 2.27 -519.98 -1.18 -1.86 16 13 C 0.08 0.03 9.89 83.00 0.82 0.85 16 14 C -0.23 -1.33 5.58 -18.62 -0.10 -1.44 16 15 C -0.05 -0.21 3.06 71.24 0.22 0.01 16 16 O -0.56 -3.70 12.88 -148.98 -1.92 -5.61 16 17 Si 0.80 -1.06 30.75 68.60 2.11 1.05 16 18 C -0.12 -1.27 6.35 -20.20 -0.13 -1.39 16 19 C -0.09 -0.99 10.05 22.23 0.22 -0.76 16 20 C -0.15 -1.20 9.97 22.04 0.22 -0.98 16 21 C -0.11 -0.64 10.01 22.30 0.22 -0.42 16 22 C -0.13 -0.81 10.00 22.37 0.22 -0.58 16 23 C 0.09 0.70 6.80 39.03 0.27 0.97 16 24 C -0.13 0.81 7.65 31.12 0.24 1.05 16 25 H 0.04 -0.17 8.14 -2.39 -0.02 -0.18 16 26 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.09 -0.42 8.14 -2.38 -0.02 -0.44 16 28 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 29 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.42 -5.79 8.73 -92.71 -0.81 -6.60 16 31 H 0.14 -1.66 8.14 -2.39 -0.02 -1.67 16 32 H 0.17 -2.71 8.12 -2.38 -0.02 -2.73 16 33 H 0.21 -1.84 6.35 -2.91 -0.02 -1.86 16 34 H 0.09 0.64 7.96 -2.39 -0.02 0.62 16 35 H 0.39 -0.39 8.70 -74.06 -0.64 -1.04 16 36 H -0.30 -1.93 7.11 99.48 0.71 -1.22 16 37 H -0.27 -0.49 7.11 99.48 0.71 0.22 16 38 H 0.12 1.17 8.06 -2.90 -0.02 1.15 16 39 H 0.14 0.50 8.06 -2.91 -0.02 0.47 16 40 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 41 H 0.13 0.17 8.06 -2.91 -0.02 0.15 16 42 H 0.11 -0.81 8.12 -2.39 -0.02 -0.83 16 43 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 Total: 0.00 -28.24 365.61 -0.13 -28.36 By element: Atomic # 1 Polarization: -15.16 SS G_CDS: -0.38 Total: -15.54 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.25 Total: -1.51 kcal Atomic # 7 Polarization: 4.23 SS G_CDS: -3.54 Total: 0.69 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -3.56 Total: -13.05 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.11 Total: 1.05 kcal Total: -28.24 -0.13 -28.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.070 kcal (2) G-P(sol) polarization free energy of solvation -28.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds