Wall clock time and date at job start Mon Mar 8 2021 04:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35968 * 116.99988 * 2 1 4 4 C 1.39381 * 120.12214 * 179.97438 * 3 2 1 5 5 O 1.34838 * 133.24213 * 0.02562 * 4 3 2 6 6 C 1.34878 * 110.85253 * 179.97438 * 5 4 3 7 7 C 1.47035 * 125.13521 * 179.97438 * 6 5 4 8 8 N 1.32411 * 126.70625 * 359.69527 * 7 6 5 9 9 C 1.34112 * 105.52324 * 179.91168 * 8 7 6 10 10 C 1.50700 * 126.15771 * 180.12614 * 9 8 7 11 11 C 1.52997 * 109.47132 * 300.23752 * 10 9 8 12 12 C 1.52998 * 109.46950 * 60.23814 * 10 9 8 13 13 C 1.52997 * 109.47071 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46965 * 299.99614 * 13 12 10 15 15 H 1.09003 * 109.46955 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47291 * 299.99895 * 14 13 12 17 17 C 1.52998 * 109.46911 * 60.00288 * 14 13 12 18 18 C 1.52997 * 109.47393 * 299.99849 * 17 14 13 19 19 N 1.30083 * 107.68168 * 0.34876 * 9 8 7 20 20 O 1.21274 * 110.55088 * 359.77776 * 19 9 8 21 21 C 1.35802 * 109.73140 * 0.02562 * 6 5 4 22 22 C 1.40587 * 119.14890 * 180.02562 * 4 3 2 23 23 C 1.39747 * 120.12524 * 0.02562 * 22 4 3 24 24 C 1.50702 * 120.08896 * 180.02562 * 23 22 4 25 25 O 1.42900 * 109.47102 * 284.99685 * 24 23 22 26 26 Si 1.86306 * 109.46698 * 165.00247 * 24 23 22 27 27 C 1.36661 * 119.81341 * 0.02562 * 23 22 4 28 28 C 1.38315 * 120.11600 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47469 * 60.00002 * 1 2 3 30 30 H 1.09004 * 109.46846 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46727 * 299.99383 * 1 2 3 32 32 H 1.09005 * 109.46962 * 59.99757 * 11 10 9 33 33 H 1.09003 * 109.47287 * 179.97438 * 11 10 9 34 34 H 1.08995 * 109.47226 * 300.00398 * 11 10 9 35 35 H 1.09001 * 109.47277 * 299.99735 * 12 10 9 36 36 H 1.08996 * 109.47357 * 59.99792 * 12 10 9 37 37 H 1.09008 * 109.47309 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.47332 * 59.99615 * 13 12 10 39 39 H 0.96691 * 114.00462 * 300.00070 * 16 14 13 40 40 H 1.09005 * 109.47038 * 179.97438 * 17 14 13 41 41 H 1.09009 * 109.47287 * 59.99723 * 17 14 13 42 42 H 1.09004 * 109.46851 * 300.00656 * 18 17 14 43 43 H 1.09000 * 109.47780 * 180.02562 * 18 17 14 44 44 H 1.07999 * 126.95602 * 180.02562 * 21 6 5 45 45 H 1.08995 * 109.46874 * 45.00238 * 24 23 22 46 46 H 0.96699 * 114.00201 * 300.00544 * 25 24 23 47 47 H 1.48497 * 109.99573 * 180.02562 * 26 24 23 48 48 H 1.48499 * 109.99711 * 301.31783 * 26 24 23 49 49 H 1.07999 * 119.75797 * 179.97438 * 27 23 22 50 50 H 1.07999 * 119.66612 * 359.69890 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4380 1.2874 0.0005 5 8 4.4139 0.3569 0.0007 6 6 5.6312 0.9378 0.0007 7 6 6.9127 0.2171 0.0014 8 7 7.0822 -1.0961 0.0077 9 6 8.4097 -1.2867 0.0036 10 6 9.1169 -2.6175 0.0052 11 6 8.7192 -3.4048 1.2553 12 6 8.7195 -3.4077 -1.2431 13 6 9.4369 -4.7590 -1.2411 14 6 10.9502 -4.5330 -1.2410 15 1 11.4613 -5.4957 -1.2392 16 8 11.3221 -3.7979 -2.4086 17 6 11.3476 -3.7427 0.0073 18 6 10.6302 -2.3914 0.0054 19 7 8.9770 -0.1161 0.0027 20 8 8.1407 0.7622 0.0014 21 6 5.4944 2.2890 0.0012 22 6 4.0549 2.5507 0.0011 23 6 3.2765 3.7113 0.0016 24 6 3.9386 5.0651 0.0016 25 8 4.4616 5.3396 1.3028 26 14 2.6871 6.3684 -0.4522 27 6 1.9133 3.6152 0.0021 28 6 1.2953 2.3730 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 7.6412 -3.5662 1.2554 33 1 9.2304 -4.3675 1.2563 34 1 9.0023 -2.8418 2.1447 35 1 7.6415 -3.5692 -1.2430 36 1 9.0027 -2.8468 -2.1337 37 1 9.1541 -5.3219 -2.1308 38 1 9.1533 -5.3197 -0.3505 39 1 11.0998 -4.2402 -3.2392 40 1 12.4258 -3.5820 0.0076 41 1 11.0639 -4.3035 0.8980 42 1 10.9138 -1.8307 -0.8853 43 1 10.9136 -1.8282 0.8945 44 1 6.2876 3.0219 0.0009 45 1 4.7507 5.0723 -0.7254 46 1 3.7931 5.3488 2.0015 47 1 3.3277 7.7081 -0.4564 48 1 2.1123 6.0766 -1.7900 49 1 1.3126 4.5127 0.0030 50 1 0.2170 2.3124 -0.0040 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_270196_14034410_8783124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:36:02 Heat of formation + Delta-G solvation = -9.076780 kcal Electronic energy + Delta-G solvation = -36205.532333 eV Core-core repulsion = 31363.031636 eV Total energy + Delta-G solvation = -4842.500697 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -46.93607 -43.84077 -40.94669 -40.70757 -39.09125 -37.76108 -37.00167 -36.33423 -34.76212 -33.34136 -32.06523 -31.92812 -31.71831 -30.71399 -28.56600 -28.00394 -26.38862 -25.80504 -25.70384 -24.10812 -23.83694 -23.21041 -22.14162 -21.79538 -20.16250 -19.55744 -19.54653 -19.01537 -18.75183 -18.05671 -17.75296 -17.69546 -17.56859 -17.10252 -16.60790 -16.48042 -16.17572 -16.09331 -15.78607 -15.73356 -15.06843 -14.84088 -14.55432 -14.48502 -14.47257 -14.20065 -14.12679 -13.95077 -13.57007 -13.42234 -13.41378 -13.30862 -13.17801 -13.08938 -12.86395 -12.75765 -12.49148 -12.41536 -12.33275 -12.24518 -12.10435 -11.98256 -11.89404 -11.87634 -11.43499 -11.11265 -10.84912 -10.71446 -10.41578 -9.81144 -9.02654 -4.96126 -1.10338 -0.02382 0.07906 0.37291 0.68998 1.30302 1.33288 1.71988 1.99063 2.04592 2.10598 2.16389 2.37193 2.57578 3.13483 3.31948 3.42444 3.55962 3.60221 3.61201 3.65940 3.68641 3.81113 3.84541 3.89834 3.99148 4.06384 4.09412 4.19809 4.22935 4.28157 4.32845 4.38869 4.41497 4.42461 4.46086 4.48221 4.57806 4.67457 4.70287 4.74989 4.76565 4.83704 4.86910 4.92650 4.96672 5.01556 5.02366 5.08598 5.17064 5.18893 5.23558 5.36152 5.39126 5.56048 6.24090 6.73395 6.82849 6.88695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.339 6.339 3 C 0.133 3.867 4 C 0.021 3.979 5 O -0.181 6.181 6 C 0.071 3.929 7 C 0.247 3.753 8 N -0.469 5.469 9 C 0.190 3.810 10 C 0.031 3.969 11 C -0.140 4.140 12 C -0.096 4.096 13 C -0.146 4.146 14 C 0.101 3.899 15 H 0.076 0.924 16 O -0.586 6.586 17 C -0.113 4.113 18 C -0.096 4.096 19 N -0.385 5.385 20 O 0.102 5.898 21 C -0.101 4.101 22 C -0.092 4.092 23 C -0.101 4.101 24 C -0.076 4.076 25 O -0.552 6.552 26 Si 0.789 3.211 27 C -0.077 4.077 28 C -0.159 4.159 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.390 0.610 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.194 0.806 45 H 0.105 0.895 46 H 0.396 0.604 47 H -0.302 1.302 48 H -0.281 1.281 49 H 0.178 0.822 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.990 -0.201 1.635 8.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.253 6.253 3 C 0.087 3.913 4 C -0.027 4.027 5 O -0.083 6.083 6 C 0.022 3.978 7 C 0.030 3.970 8 N -0.202 5.202 9 C -0.083 4.083 10 C 0.029 3.971 11 C -0.198 4.198 12 C -0.134 4.134 13 C -0.183 4.183 14 C 0.042 3.958 15 H 0.094 0.906 16 O -0.394 6.394 17 C -0.151 4.151 18 C -0.134 4.134 19 N -0.091 5.091 20 O 0.041 5.959 21 C -0.124 4.124 22 C -0.093 4.093 23 C -0.102 4.102 24 C -0.185 4.185 25 O -0.361 6.361 26 Si 0.694 3.306 27 C -0.094 4.094 28 C -0.177 4.177 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.239 0.761 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.211 0.789 45 H 0.123 0.877 46 H 0.246 0.754 47 H -0.230 1.230 48 H -0.208 1.208 49 H 0.195 0.805 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.641 0.006 1.207 6.750 hybrid contribution 0.280 -0.520 -0.772 0.972 sum -6.361 -0.514 0.435 6.396 Atomic orbital electron populations 1.23503 0.75145 1.05958 1.03409 1.86173 1.24535 1.26129 1.88465 1.18071 0.85975 0.87038 1.00194 1.19283 0.88109 0.86920 1.08359 1.84047 1.12154 1.35221 1.76829 1.17313 0.80219 0.89262 1.11028 1.24509 0.87476 0.86753 0.98234 1.72289 1.15839 1.12335 1.19758 1.26293 0.86504 0.96943 0.98553 1.19235 0.94138 0.84655 0.99099 1.21986 1.02451 1.00998 0.94346 1.21414 1.00387 0.96586 0.95049 1.22302 0.95456 0.95899 1.04675 1.21900 0.93561 0.94644 0.85646 0.90566 1.86507 1.85007 1.50859 1.17000 1.21673 1.00714 0.95093 0.97577 1.21363 0.91328 0.98766 1.01957 1.74649 1.13326 0.99050 1.22037 1.85485 1.11731 1.32844 1.65817 1.23023 0.96361 0.92905 1.00095 1.19484 0.92090 0.92538 1.05194 1.19687 0.93653 0.93884 1.02987 1.25297 1.05926 0.97976 0.89302 1.86501 1.39609 1.93308 1.16640 0.93863 0.80556 0.73348 0.82808 1.20837 0.92584 0.98516 0.97465 1.21460 1.02005 0.89369 1.04881 0.90472 0.87013 0.90158 0.92112 0.88033 0.92649 0.91677 0.92766 0.89727 0.88834 0.76079 0.90895 0.88098 0.92687 0.92015 0.78868 0.87710 0.75365 1.23021 1.20803 0.80486 0.79779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.34 -1.46 10.50 -93.19 -0.98 -2.43 16 3 C 0.13 0.47 6.70 22.56 0.15 0.62 16 4 C 0.02 0.18 7.35 23.12 0.17 0.34 16 5 O -0.18 -2.31 10.60 -13.53 -0.14 -2.45 16 6 C 0.07 0.70 7.15 24.01 0.17 0.87 16 7 C 0.25 2.86 8.27 87.02 0.72 3.58 16 8 N -0.47 -6.32 11.59 -302.55 -3.51 -9.82 16 9 C 0.19 2.18 6.39 138.54 0.88 3.06 16 10 C 0.03 0.18 0.74 -52.93 -0.04 0.14 16 11 C -0.14 -0.32 7.76 71.98 0.56 0.24 16 12 C -0.10 -0.38 4.57 30.59 0.14 -0.24 16 13 C -0.15 0.31 5.36 30.59 0.16 0.48 16 14 C 0.10 -0.11 3.77 30.59 0.12 0.00 16 15 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 16 O -0.59 -1.45 11.97 -148.98 -1.78 -3.24 16 17 C -0.11 -0.03 5.39 30.59 0.16 0.13 16 18 C -0.10 -0.52 4.08 30.59 0.12 -0.39 16 19 N -0.39 -4.97 11.45 -58.19 -0.67 -5.63 16 20 O 0.10 1.14 11.34 68.23 0.77 1.91 16 21 C -0.10 -0.53 10.93 23.81 0.26 -0.27 16 22 C -0.09 -0.43 6.16 -20.24 -0.12 -0.56 16 23 C -0.10 0.11 5.26 -19.87 -0.10 0.01 16 24 C -0.08 0.19 2.70 71.24 0.19 0.39 16 25 O -0.55 0.94 12.88 -148.98 -1.92 -0.98 16 26 Si 0.79 -4.40 29.93 68.60 2.05 -2.35 16 27 C -0.08 0.46 8.62 22.02 0.19 0.65 16 28 C -0.16 0.73 9.03 22.41 0.20 0.93 16 29 H 0.08 -0.75 7.66 -2.39 -0.02 -0.77 16 30 H 0.11 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H 0.08 -0.82 7.66 -2.39 -0.02 -0.83 16 32 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.10 -0.30 4.81 -2.39 -0.01 -0.31 16 34 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.05 0.39 7.68 -2.39 -0.02 0.38 16 37 H 0.08 -0.37 8.14 -2.38 -0.02 -0.39 16 38 H 0.09 -0.43 6.43 -2.39 -0.02 -0.45 16 39 H 0.39 -1.87 9.08 -74.06 -0.67 -2.54 16 40 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 41 H 0.10 -0.38 6.43 -2.38 -0.02 -0.39 16 42 H 0.05 0.57 7.68 -2.38 -0.02 0.55 16 43 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 45 H 0.11 -0.09 7.96 -2.39 -0.02 -0.11 16 46 H 0.40 -4.02 8.70 -74.06 -0.64 -4.67 16 47 H -0.30 -0.87 7.11 99.48 0.71 -0.16 16 48 H -0.28 0.26 7.11 99.48 0.71 0.97 16 49 H 0.18 -2.42 5.08 -2.91 -0.01 -2.43 16 50 H 0.19 -2.22 6.26 -2.91 -0.02 -2.23 16 Total: 0.00 -25.97 403.14 -1.37 -27.34 By element: Atomic # 1 Polarization: -13.10 SS G_CDS: -0.25 Total: -13.35 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 5.05 Total: 11.00 kcal Atomic # 7 Polarization: -11.28 SS G_CDS: -4.17 Total: -15.46 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -4.05 Total: -7.18 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: 2.05 Total: -2.35 kcal Total: -25.97 -1.37 -27.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_270196_14034410_8783124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.261 kcal (2) G-P(sol) polarization free energy of solvation -25.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds