Wall clock time and date at job start Mon Mar 8 2021 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35963 * 116.99552 * 2 1 4 4 C 1.39385 * 120.11842 * 180.02562 * 3 2 1 5 5 O 1.34846 * 133.24386 * 0.40539 * 4 3 2 6 6 C 1.34867 * 110.85280 * 180.08879 * 5 4 3 7 7 C 1.47026 * 125.13573 * 179.81277 * 6 5 4 8 8 N 1.32414 * 126.70908 * 359.69659 * 7 6 5 9 9 C 1.34106 * 105.53045 * 179.73784 * 8 7 6 10 10 C 1.50701 * 126.15787 * 180.02562 * 9 8 7 11 11 Si 1.86298 * 109.46839 * 90.00307 * 10 9 8 12 12 C 1.86303 * 109.47644 * 59.99878 * 11 10 9 13 13 C 1.86298 * 109.47092 * 180.02562 * 11 10 9 14 14 C 1.86301 * 109.46928 * 299.99717 * 11 10 9 15 15 N 1.30078 * 107.68181 * 359.97438 * 9 8 7 16 16 O 1.21277 * 110.55050 * 0.02562 * 15 9 8 17 17 C 1.35805 * 109.73094 * 359.54908 * 6 5 4 18 18 C 1.40584 * 119.14767 * 180.02562 * 4 3 2 19 19 C 1.39742 * 120.12887 * 0.03812 * 18 4 3 20 20 C 1.50699 * 120.09297 * 179.97438 * 19 18 4 21 21 O 1.42898 * 109.47658 * 74.99820 * 20 19 18 22 22 Si 1.86301 * 109.46955 * 194.99792 * 20 19 18 23 23 H 1.48503 * 109.47489 * 59.99704 * 22 20 19 24 24 H 1.48499 * 109.47162 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46897 * 299.99674 * 22 20 19 26 26 C 1.36666 * 119.81397 * 359.94919 * 19 18 4 27 27 C 1.38314 * 120.12169 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.47154 * 60.00614 * 1 2 3 29 29 H 1.09004 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47519 * 300.00031 * 1 2 3 31 31 H 1.09006 * 109.47064 * 209.99533 * 10 9 8 32 32 H 1.08991 * 109.47213 * 329.99667 * 10 9 8 33 33 H 1.09002 * 109.46883 * 59.99573 * 12 11 10 34 34 H 1.08993 * 109.47180 * 179.97438 * 12 11 10 35 35 H 1.09006 * 109.46622 * 299.99999 * 12 11 10 36 36 H 1.08997 * 109.47527 * 59.99361 * 13 11 10 37 37 H 1.09002 * 109.47380 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47290 * 300.00126 * 13 11 10 39 39 H 1.08993 * 109.47337 * 60.00636 * 14 11 10 40 40 H 1.09002 * 109.47015 * 180.02562 * 14 11 10 41 41 H 1.08999 * 109.47483 * 299.99907 * 14 11 10 42 42 H 1.08000 * 126.95352 * 180.23354 * 17 6 5 43 43 H 1.09002 * 109.47500 * 314.99229 * 20 19 18 44 44 H 0.96699 * 114.00277 * 179.97438 * 21 20 19 45 45 H 1.07998 * 119.76179 * 179.97438 * 26 19 18 46 46 H 1.07997 * 119.66507 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4380 1.2874 -0.0005 5 8 4.4139 0.3570 -0.0081 6 6 5.6311 0.9378 -0.0028 7 6 6.9126 0.2172 -0.0046 8 7 7.0822 -1.0960 -0.0058 9 6 8.4096 -1.2867 -0.0131 10 6 9.1168 -2.6175 -0.0178 11 14 9.3988 -3.1645 -1.7762 12 6 10.4459 -1.9017 -2.6593 13 6 10.2723 -4.8100 -1.7821 14 6 7.7594 -3.3293 -2.6457 15 7 8.9769 -0.1161 -0.0165 16 8 8.1406 0.7622 -0.0115 17 6 5.4943 2.2890 -0.0016 18 6 4.0548 2.5507 0.0000 19 6 3.2765 3.7113 0.0019 20 6 3.9385 5.0651 0.0031 21 8 4.4603 5.3414 -1.2982 22 14 2.6875 6.3677 0.4600 23 1 2.1452 6.0807 1.8123 24 1 3.3400 7.7017 0.4618 25 1 1.5801 6.3591 -0.5294 26 6 1.9132 3.6152 0.0022 27 6 1.2953 2.3730 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 10.0760 -2.5210 0.4909 32 1 8.5042 -3.3562 0.4988 33 1 11.4050 -1.8053 -2.1505 34 1 10.6112 -2.2221 -3.6878 35 1 9.9343 -0.9392 -2.6558 36 1 9.6594 -5.5487 -1.2656 37 1 10.4369 -5.1304 -2.8109 38 1 11.2314 -4.7141 -1.2732 39 1 7.2479 -2.3669 -2.6423 40 1 7.9243 -3.6499 -3.6744 41 1 7.1467 -4.0682 -2.1292 42 1 6.2875 3.0219 -0.0013 43 1 4.7514 5.0715 0.7293 44 1 4.9011 6.1990 -1.3713 45 1 1.3125 4.5127 0.0040 46 1 0.2170 2.3124 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_270196_16471444_8783124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:31:59 Heat of formation + Delta-G solvation = 4.566190 kcal Electronic energy + Delta-G solvation = -29883.992917 eV Core-core repulsion = 25675.398291 eV Total energy + Delta-G solvation = -4208.594626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 362.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.79633 -43.81710 -40.71559 -38.99118 -37.37644 -37.06281 -34.98608 -33.43975 -32.03622 -30.97030 -30.13168 -29.21988 -28.58991 -28.41731 -28.37120 -26.34905 -25.63681 -24.71974 -23.75134 -22.32443 -21.72068 -19.72695 -19.47958 -18.91325 -18.69580 -18.42503 -17.89478 -17.64771 -16.84354 -16.49888 -16.32889 -15.69853 -15.37555 -14.88073 -14.79618 -14.79050 -14.48297 -14.30735 -14.19905 -14.10461 -13.93638 -13.88698 -13.79182 -13.49366 -13.45291 -13.25181 -13.19625 -13.17446 -13.09792 -13.05185 -12.54501 -12.44810 -12.34136 -12.19852 -12.07110 -11.99059 -11.65229 -10.99678 -10.86994 -10.85047 -10.58694 -10.25779 -9.78904 -9.02705 -1.05075 -0.00909 0.06579 0.43020 0.70524 1.19647 1.31749 1.52785 1.58840 1.72753 1.83058 1.88675 1.95909 2.01016 2.16072 2.31288 2.32961 2.54381 2.82463 3.23287 3.42424 3.52879 3.71295 3.80392 3.84824 3.98055 4.08565 4.25629 4.28144 4.37486 4.37774 4.41754 4.45513 4.63974 4.67279 4.69499 4.71932 4.73238 4.74531 4.78291 4.81887 4.85047 4.86965 4.98793 5.03779 5.18495 5.33794 5.45970 5.52985 5.56690 5.63853 6.20999 6.84663 6.87892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.336 6.336 3 C 0.134 3.866 4 C 0.023 3.977 5 O -0.181 6.181 6 C 0.069 3.931 7 C 0.248 3.752 8 N -0.477 5.477 9 C 0.200 3.800 10 C -0.356 4.356 11 Si 1.090 2.910 12 C -0.464 4.464 13 C -0.444 4.444 14 C -0.466 4.466 15 N -0.392 5.392 16 O 0.101 5.899 17 C -0.095 4.095 18 C -0.089 4.089 19 C -0.061 4.061 20 C -0.085 4.085 21 O -0.560 6.560 22 Si 0.980 3.020 23 H -0.255 1.255 24 H -0.255 1.255 25 H -0.257 1.257 26 C -0.099 4.099 27 C -0.162 4.162 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.205 0.795 43 H 0.096 0.904 44 H 0.399 0.601 45 H 0.157 0.843 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 3.126 0.862 4.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.250 6.250 3 C 0.088 3.912 4 C -0.025 4.025 5 O -0.082 6.082 6 C 0.020 3.980 7 C 0.031 3.969 8 N -0.213 5.213 9 C -0.071 4.071 10 C -0.437 4.437 11 Si 1.279 2.721 12 C -0.570 4.570 13 C -0.554 4.554 14 C -0.572 4.572 15 N -0.101 5.101 16 O 0.042 5.958 17 C -0.117 4.117 18 C -0.090 4.090 19 C -0.061 4.061 20 C -0.194 4.194 21 O -0.369 6.369 22 Si 0.803 3.197 23 H -0.179 1.179 24 H -0.179 1.179 25 H -0.182 1.182 26 C -0.117 4.117 27 C -0.181 4.181 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.222 0.778 43 H 0.114 0.886 44 H 0.250 0.750 45 H 0.174 0.826 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.674 2.352 1.016 3.704 hybrid contribution 0.107 0.350 0.036 0.367 sum -2.568 2.702 1.052 3.873 Atomic orbital electron populations 1.23491 0.75292 1.06014 1.03204 1.86169 1.24409 1.25953 1.88495 1.17995 0.86204 0.86775 1.00266 1.19205 0.87990 0.87081 1.08255 1.84049 1.12262 1.35118 1.76809 1.17401 0.80235 0.89429 1.10923 1.24416 0.87440 0.86833 0.98236 1.72355 1.16227 1.12408 1.20263 1.25762 0.86316 0.96922 0.98133 1.25355 1.03386 0.90248 1.24667 0.78146 0.65460 0.67130 0.61357 1.26325 1.10231 1.11406 1.09035 1.26010 1.08381 1.15541 1.05456 1.26375 1.18407 1.03573 1.08800 1.74618 1.13170 0.98907 1.23375 1.85470 1.11491 1.32845 1.66007 1.23060 0.95861 0.92985 0.99791 1.19476 0.92611 0.92107 1.04842 1.18718 0.92787 0.92841 1.01780 1.24832 1.05973 0.99034 0.89564 1.86490 1.78263 1.43427 1.28725 0.85276 0.77964 0.76642 0.79858 1.17915 1.17886 1.18172 1.20869 0.93503 0.98652 0.98686 1.21336 1.01790 0.89473 1.05455 0.90678 0.86700 0.90463 0.85725 0.85864 0.90461 0.90368 0.93395 0.90276 0.90328 0.90061 0.93725 0.90558 0.90916 0.77789 0.88586 0.75032 0.82593 0.80336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -2.18 10.50 -93.13 -0.98 -3.16 16 3 C 0.13 0.85 6.70 22.56 0.15 1.00 16 4 C 0.02 0.23 7.35 23.12 0.17 0.39 16 5 O -0.18 -2.39 10.60 -13.50 -0.14 -2.53 16 6 C 0.07 0.63 7.15 24.01 0.17 0.80 16 7 C 0.25 2.47 8.27 87.02 0.72 3.19 16 8 N -0.48 -5.66 11.59 -302.56 -3.51 -9.17 16 9 C 0.20 1.65 6.55 138.55 0.91 2.56 16 10 C -0.36 -0.27 5.09 71.24 0.36 0.09 16 11 Si 1.09 -2.37 12.39 68.60 0.85 -1.52 16 12 C -0.46 -0.48 8.65 113.37 0.98 0.50 16 13 C -0.44 1.90 8.65 113.37 0.98 2.88 16 14 C -0.47 -1.31 8.65 113.37 0.98 -0.33 16 15 N -0.39 -3.72 12.14 -58.19 -0.71 -4.42 16 16 O 0.10 0.85 11.34 68.20 0.77 1.63 16 17 C -0.09 -0.38 10.93 23.81 0.26 -0.12 16 18 C -0.09 -0.53 6.16 -20.24 -0.12 -0.65 16 19 C -0.06 -0.13 5.30 -19.87 -0.11 -0.24 16 20 C -0.08 0.26 2.70 71.24 0.19 0.45 16 21 O -0.56 1.19 12.86 -148.98 -1.92 -0.72 16 22 Si 0.98 -4.50 25.50 68.60 1.75 -2.75 16 23 H -0.26 0.82 7.11 99.48 0.71 1.53 16 24 H -0.25 1.11 7.11 99.48 0.71 1.82 16 25 H -0.26 0.73 6.74 99.48 0.67 1.40 16 26 C -0.10 0.00 8.62 22.02 0.19 0.19 16 27 C -0.16 -0.01 9.03 22.41 0.20 0.20 16 28 H 0.07 -0.52 7.66 -2.39 -0.02 -0.53 16 29 H 0.11 -0.70 8.14 -2.38 -0.02 -0.72 16 30 H 0.08 -0.57 7.66 -2.39 -0.02 -0.58 16 31 H 0.12 -0.31 7.96 -2.38 -0.02 -0.33 16 32 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 33 H 0.08 0.00 7.96 -2.39 -0.02 -0.02 16 34 H 0.08 -0.01 7.96 -2.39 -0.02 -0.03 16 35 H 0.05 0.23 7.96 -2.38 -0.02 0.21 16 36 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 37 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 38 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 39 H 0.04 0.33 7.96 -2.39 -0.02 0.31 16 40 H 0.08 0.10 7.96 -2.39 -0.02 0.08 16 41 H 0.07 0.19 7.96 -2.39 -0.02 0.18 16 42 H 0.21 -0.58 8.06 -2.91 -0.02 -0.60 16 43 H 0.10 -0.68 7.96 -2.39 -0.02 -0.70 16 44 H 0.40 -4.48 8.74 -74.06 -0.65 -5.13 16 45 H 0.16 -0.70 4.84 -2.91 -0.01 -0.72 16 46 H 0.18 -1.25 6.26 -2.91 -0.02 -1.27 16 Total: 0.00 -21.53 394.41 4.37 -17.16 By element: Atomic # 1 Polarization: -7.59 SS G_CDS: 1.10 Total: -6.49 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 7.15 Total: 11.98 kcal Atomic # 7 Polarization: -9.37 SS G_CDS: -4.21 Total: -13.59 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: -2.26 Total: -4.79 kcal Atomic # 14 Polarization: -6.87 SS G_CDS: 2.60 Total: -4.27 kcal Total: -21.53 4.37 -17.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_270196_16471444_8783124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.726 kcal (2) G-P(sol) polarization free energy of solvation -21.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds