Wall clock time and date at job start Mon Mar 8 2021 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86309 * 109.46734 * 2 1 4 4 C 1.50691 * 109.47325 * 240.00148 * 2 1 3 5 5 C 1.38022 * 120.33859 * 119.99537 * 4 2 1 6 6 N 1.31974 * 120.86146 * 180.02562 * 5 4 2 7 7 C 1.32403 * 121.61742 * 0.02562 * 6 5 4 8 8 N 1.39003 * 119.69938 * 180.02562 * 7 6 5 9 9 C 1.46496 * 119.99437 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.91246 * 23.74661 * 9 8 7 11 11 C 1.53786 * 113.61518 * 154.99902 * 9 8 7 12 12 C 1.53781 * 87.17350 * 89.15486 * 11 9 8 13 13 H 1.08997 * 113.61223 * 270.84552 * 12 11 9 14 14 C 1.50698 * 113.61342 * 140.02323 * 12 11 9 15 15 C 1.38227 * 119.96786 * 120.00125 * 14 12 11 16 16 C 1.38237 * 120.04899 * 179.97438 * 15 14 12 17 17 C 1.38406 * 119.98611 * 0.02562 * 16 15 14 18 18 F 1.35100 * 120.03003 * 179.97438 * 17 16 15 19 19 C 1.38595 * 119.94104 * 359.97438 * 17 16 15 20 20 Cl 1.73593 * 120.02398 * 180.02562 * 19 17 16 21 21 C 1.38261 * 119.97302 * 299.72654 * 14 12 11 22 22 C 1.53782 * 87.08260 * 25.39213 * 12 11 9 23 23 C 1.39133 * 120.59116 * 0.27800 * 7 6 5 24 24 C 1.38307 * 119.09365 * 359.43319 * 23 7 6 25 25 H 0.96693 * 113.99987 * 60.00451 * 1 2 3 26 26 H 1.09000 * 109.47038 * 119.99719 * 2 1 3 27 27 H 1.48500 * 109.99980 * 60.00098 * 3 2 1 28 28 H 1.48493 * 109.99681 * 181.31952 * 3 2 1 29 29 H 1.08004 * 119.57188 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00446 * 359.97438 * 8 7 6 31 31 H 1.09002 * 113.61357 * 334.56403 * 11 9 8 32 32 H 1.09002 * 113.61608 * 203.74565 * 11 9 8 33 33 H 1.07993 * 119.97390 * 0.02562 * 15 14 12 34 34 H 1.07994 * 120.00771 * 179.97438 * 16 15 14 35 35 H 1.08001 * 119.98950 * 0.02562 * 21 14 12 36 36 H 1.08997 * 113.61668 * 89.11298 * 22 12 11 37 37 H 1.08998 * 113.61674 * 219.93807 * 22 12 11 38 38 H 1.07997 * 120.45610 * 179.70263 * 23 7 6 39 39 H 1.08007 * 120.74386 * 180.26572 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7253 -0.0462 -2.1435 6 7 3.1705 -0.6581 -3.2248 7 6 2.8760 -1.9242 -3.4767 8 7 3.3669 -2.5295 -4.6277 9 6 3.0447 -3.9298 -4.9132 10 1 2.1301 -4.2632 -4.4229 11 6 3.1062 -4.2836 -6.4086 12 6 4.5917 -4.6163 -6.1908 13 1 5.2551 -3.7624 -6.3282 14 6 5.0518 -5.8413 -6.9383 15 6 6.0657 -5.7399 -7.8723 16 6 6.4895 -6.8626 -8.5586 17 6 5.8979 -8.0890 -8.3108 18 9 6.3110 -9.1867 -8.9814 19 6 4.8813 -8.1901 -7.3742 20 17 4.1383 -9.7275 -7.0613 21 6 4.4634 -7.0665 -6.6852 22 6 4.2342 -4.8880 -4.7200 23 6 2.0754 -2.6525 -2.6025 24 6 1.5993 -2.0395 -1.4577 25 1 -0.3933 0.4416 -0.7650 26 1 1.7924 -0.5138 0.8900 27 1 1.5614 2.4680 1.2085 28 1 3.5345 1.7704 -0.0321 29 1 2.9856 0.9877 -1.9709 30 1 3.9222 -2.0245 -5.2423 31 1 2.9418 -3.4301 -7.0663 32 1 2.5000 -5.1485 -6.6779 33 1 6.5277 -4.7830 -8.0654 34 1 7.2814 -6.7825 -9.2884 35 1 3.6740 -7.1452 -5.9522 36 1 3.9360 -5.9184 -4.5262 37 1 4.9810 -4.5237 -4.0146 38 1 1.8327 -3.6836 -2.8126 39 1 0.9792 -2.5811 -0.7586 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10156536_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:46:02 Heat of formation + Delta-G solvation = 24.176813 kcal Electronic energy + Delta-G solvation = -24816.947053 eV Core-core repulsion = 20860.664719 eV Total energy + Delta-G solvation = -3956.282335 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.083 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.05795 -41.67444 -40.98061 -39.29251 -37.85100 -37.56948 -35.28723 -33.38555 -32.05412 -31.89674 -30.71703 -26.77045 -26.68094 -25.72067 -24.75844 -24.23604 -23.01826 -22.35360 -20.17931 -19.12784 -18.75617 -18.40803 -17.72665 -17.39563 -17.12107 -16.86900 -16.49890 -16.13295 -16.01061 -15.98327 -15.39457 -15.20611 -14.99156 -14.74381 -14.41290 -14.36058 -14.11185 -14.02378 -13.93528 -13.56567 -13.43434 -13.30916 -12.62376 -12.58300 -12.34529 -12.17878 -12.09469 -11.88979 -11.74459 -11.23655 -11.03152 -10.72118 -10.39378 -10.35795 -10.05712 -9.60273 -8.66490 -4.98122 -0.13994 0.00266 0.24595 0.42317 0.92424 1.35582 1.64507 1.98386 2.08471 2.31661 2.84657 3.02177 3.42318 3.55320 3.57854 3.62455 3.66005 3.69988 3.80948 3.93253 3.99928 4.03945 4.08937 4.11758 4.24086 4.38767 4.44599 4.53820 4.63509 4.77194 4.77915 4.81189 4.85354 4.87725 4.99236 5.03281 5.05679 5.08177 5.21289 5.35334 5.44573 5.59212 5.64100 6.08647 6.57498 6.81433 7.16909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.054 4.054 3 Si 0.766 3.234 4 C -0.237 4.237 5 C 0.145 3.855 6 N -0.564 5.564 7 C 0.398 3.602 8 N -0.700 5.700 9 C 0.128 3.872 10 H 0.108 0.892 11 C -0.128 4.128 12 C -0.067 4.067 13 H 0.113 0.887 14 C -0.064 4.064 15 C -0.079 4.079 16 C -0.140 4.140 17 C 0.077 3.923 18 F -0.143 7.143 19 C -0.085 4.085 20 Cl -0.062 7.062 21 C -0.081 4.081 22 C -0.148 4.148 23 C -0.240 4.240 24 C -0.014 4.014 25 H 0.394 0.606 26 H 0.106 0.894 27 H -0.298 1.298 28 H -0.287 1.287 29 H 0.166 0.834 30 H 0.408 0.592 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.152 0.848 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 3.016 -1.981 3.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.672 3.328 4 C -0.242 4.242 5 C -0.012 4.012 6 N -0.282 5.282 7 C 0.162 3.838 8 N -0.332 5.332 9 C 0.022 3.978 10 H 0.126 0.874 11 C -0.166 4.166 12 C -0.085 4.085 13 H 0.131 0.869 14 C -0.065 4.065 15 C -0.097 4.097 16 C -0.159 4.159 17 C 0.057 3.943 18 F -0.122 7.122 19 C -0.113 4.113 20 Cl -0.033 7.033 21 C -0.099 4.099 22 C -0.187 4.187 23 C -0.265 4.265 24 C -0.040 4.040 25 H 0.244 0.756 26 H 0.124 0.876 27 H -0.226 1.226 28 H -0.214 1.214 29 H 0.183 0.817 30 H 0.245 0.755 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.169 0.831 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.307 3.360 -1.645 3.754 hybrid contribution 0.082 -1.505 0.416 1.563 sum -0.225 1.856 -1.230 2.237 Atomic orbital electron populations 1.86453 1.17387 1.82107 1.50486 1.24828 0.85064 1.10045 0.96572 0.93863 0.77888 0.75903 0.85105 1.21034 1.05867 0.96856 1.00468 1.22435 0.91669 0.99214 0.87856 1.67141 1.28182 1.09961 1.22868 1.18598 0.89367 0.88346 0.87473 1.44215 1.55528 1.11463 1.21967 1.21978 0.98612 0.79796 0.97421 0.87373 1.23425 0.94943 1.03065 0.95205 1.21612 0.97404 0.94751 0.94722 0.86932 1.19907 0.95578 0.94291 0.96677 1.21394 0.95380 0.99114 0.93817 1.21426 1.01807 0.90185 1.02496 1.17832 0.97038 0.84492 0.94968 1.91514 1.89346 1.52560 1.78749 1.21190 0.99005 0.89545 1.01549 1.98402 1.81305 1.28658 1.94903 1.21019 1.00465 0.89589 0.98866 1.23715 0.98558 1.00824 0.95596 1.21704 1.04876 1.02797 0.97106 1.21397 0.93993 0.93319 0.95248 0.75605 0.87638 1.22578 1.21379 0.81716 0.75533 0.89824 0.87512 0.81818 0.82321 0.82321 0.87831 0.91361 0.83059 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.34 12.78 -148.98 -1.90 -1.57 16 2 C -0.05 0.06 2.84 71.23 0.20 0.26 16 3 Si 0.77 -1.66 29.82 68.60 2.05 0.39 16 4 C -0.24 -0.02 5.40 -19.76 -0.11 -0.13 16 5 C 0.15 0.18 9.84 84.62 0.83 1.02 16 6 N -0.56 -2.17 10.39 -193.26 -2.01 -4.18 16 7 C 0.40 0.35 7.65 133.06 1.02 1.37 16 8 N -0.70 2.87 5.44 -321.75 -1.75 1.12 16 9 C 0.13 -1.05 4.13 45.58 0.19 -0.86 16 10 H 0.11 -1.01 6.09 -2.39 -0.01 -1.02 16 11 C -0.13 1.26 7.29 31.12 0.23 1.49 16 12 C -0.07 0.60 3.86 -11.01 -0.04 0.56 16 13 H 0.11 -1.15 8.09 -2.39 -0.02 -1.17 16 14 C -0.06 0.37 5.29 -19.86 -0.11 0.26 16 15 C -0.08 0.44 9.71 22.27 0.22 0.66 16 16 C -0.14 0.28 10.03 22.31 0.22 0.50 16 17 C 0.08 0.24 7.28 22.40 0.16 0.41 16 18 F -0.14 -1.05 16.84 44.97 0.76 -0.29 16 19 C -0.09 -0.16 6.33 22.36 0.14 -0.02 16 20 Cl -0.06 -0.24 28.62 -2.72 -0.08 -0.32 16 21 C -0.08 0.27 8.41 22.28 0.19 0.46 16 22 C -0.15 1.22 7.26 31.18 0.23 1.44 16 23 C -0.24 0.24 9.29 22.50 0.21 0.45 16 24 C -0.01 0.00 9.76 22.44 0.22 0.22 16 25 H 0.39 -3.26 8.70 -74.06 -0.64 -3.91 16 26 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 27 H -0.30 -1.56 7.11 99.48 0.71 -0.86 16 28 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 29 H 0.17 -0.42 4.88 -2.91 -0.01 -0.43 16 30 H 0.41 -2.00 8.83 -92.71 -0.82 -2.82 16 31 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H 0.11 -1.12 7.73 -2.39 -0.02 -1.14 16 33 H 0.16 -1.75 8.05 -2.91 -0.02 -1.78 16 34 H 0.16 -0.84 8.06 -2.91 -0.02 -0.86 16 35 H 0.16 -1.13 6.65 -2.91 -0.02 -1.15 16 36 H 0.10 -0.99 6.30 -2.39 -0.02 -1.00 16 37 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.15 -0.81 6.03 -2.91 -0.02 -0.82 16 39 H 0.14 -0.33 8.06 -2.91 -0.02 -0.36 16 Total: 0.00 -15.97 344.15 0.57 -15.40 By element: Atomic # 1 Polarization: -18.34 SS G_CDS: -0.30 Total: -18.64 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 3.80 Total: 8.09 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -3.76 Total: -3.06 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -1.90 Total: -1.57 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.76 Total: -0.29 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: 2.05 Total: 0.39 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -15.97 0.57 -15.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10156536_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.578 kcal (2) G-P(sol) polarization free energy of solvation -15.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds