Wall clock time and date at job start Mon Mar 8 2021 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47384 * 2 1 4 4 C 1.50700 * 109.47252 * 240.00128 * 2 1 3 5 5 C 1.33330 * 125.94911 * 300.00358 * 4 2 1 6 6 N 1.32124 * 114.58023 * 179.69557 * 5 4 2 7 7 C 1.29687 * 116.86524 * 0.26640 * 6 5 4 8 8 N 1.38608 * 124.95273 * 180.02562 * 7 6 5 9 9 C 1.46502 * 119.99645 * 0.02562 * 8 7 6 10 10 H 1.09003 * 112.85081 * 336.19657 * 9 8 7 11 11 C 1.53779 * 113.61211 * 107.50566 * 9 8 7 12 12 C 1.53786 * 87.08267 * 89.11630 * 11 9 8 13 13 H 1.09004 * 113.68964 * 270.87715 * 12 11 9 14 14 C 1.50697 * 113.61642 * 139.97953 * 12 11 9 15 15 C 1.38215 * 119.96797 * 142.50335 * 14 12 11 16 16 C 1.38238 * 120.04828 * 179.97438 * 15 14 12 17 17 C 1.38402 * 119.99065 * 0.02562 * 16 15 14 18 18 F 1.35097 * 120.03485 * 179.97438 * 17 16 15 19 19 C 1.38590 * 119.93422 * 359.97438 * 17 16 15 20 20 Cl 1.73602 * 120.02604 * 180.02562 * 19 17 16 21 21 C 1.38254 * 119.96697 * 322.23116 * 14 12 11 22 22 C 1.53779 * 113.61196 * 205.00536 * 9 8 7 23 23 S 1.70969 * 110.10172 * 0.02562 * 7 6 5 24 24 H 0.96705 * 113.99847 * 59.99949 * 1 2 3 25 25 H 1.08999 * 109.46926 * 120.00536 * 2 1 3 26 26 H 1.48507 * 109.99803 * 60.00020 * 3 2 1 27 27 H 1.48501 * 110.00058 * 181.31399 * 3 2 1 28 28 H 1.08002 * 122.71398 * 359.96801 * 5 4 2 29 29 H 0.97005 * 119.99929 * 180.02562 * 8 7 6 30 30 H 1.08997 * 113.61080 * 203.65915 * 11 9 8 31 31 H 1.08999 * 113.61522 * 334.56720 * 11 9 8 32 32 H 1.07997 * 119.97929 * 0.02562 * 15 14 12 33 33 H 1.08002 * 120.00510 * 179.97438 * 16 15 14 34 34 H 1.07997 * 119.99561 * 359.97438 * 21 14 12 35 35 H 1.08997 * 113.61935 * 25.42766 * 22 9 8 36 36 H 1.09002 * 113.61821 * 156.33874 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6834 -1.9788 -1.5580 6 7 2.2328 -2.3705 -2.6940 7 6 2.9375 -1.4924 -3.3376 8 7 3.5854 -1.7218 -4.5413 9 6 3.5006 -3.0378 -5.1795 10 1 3.2809 -3.8378 -4.4725 11 6 2.6094 -3.0584 -6.4326 12 6 3.8672 -2.6901 -7.2372 13 1 4.0316 -1.6162 -7.3257 14 6 3.9712 -3.4089 -8.5576 15 6 4.4728 -2.7505 -9.6645 16 6 4.5694 -3.4084 -10.8764 17 6 4.1632 -4.7273 -10.9819 18 9 4.2567 -5.3710 -12.1660 19 6 3.6603 -5.3870 -9.8716 20 17 3.1508 -7.0415 -10.0011 21 6 3.5701 -4.7281 -8.6592 22 6 4.6837 -3.3475 -6.1118 23 16 2.9509 -0.0105 -2.4851 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5139 0.8899 26 1 1.5615 2.4678 1.2086 27 1 3.5347 1.7702 -0.0320 28 1 1.0786 -2.6320 -0.9466 29 1 4.0948 -1.0110 -4.9611 30 1 2.2129 -4.0455 -6.6700 31 1 1.8450 -2.2815 -6.4375 32 1 4.7902 -1.7215 -9.5824 33 1 4.9610 -2.8931 -11.7410 34 1 3.1828 -5.2430 -7.7924 35 1 5.5937 -2.8040 -5.8579 36 1 4.8542 -4.4136 -6.2617 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10156536_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:46:05 Heat of formation + Delta-G solvation = 30.816076 kcal Electronic energy + Delta-G solvation = -23366.852932 eV Core-core repulsion = 19500.010744 eV Total energy + Delta-G solvation = -3866.842188 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.04825 -41.45556 -40.57103 -39.24721 -37.83371 -37.57400 -35.20105 -32.02261 -31.80825 -30.91448 -26.90443 -26.64743 -26.07930 -24.63000 -24.12264 -22.89360 -21.31039 -20.13984 -19.49323 -18.94233 -18.10653 -17.76036 -17.29503 -16.86150 -16.82212 -16.50666 -16.28480 -15.82424 -15.81769 -15.40363 -15.14409 -14.89367 -14.75718 -14.42824 -14.17685 -14.06304 -13.95464 -13.60724 -13.44948 -12.87048 -12.62800 -12.58499 -12.44743 -12.17318 -12.02776 -11.88252 -11.77712 -11.25413 -11.04274 -10.76644 -10.26791 -10.14340 -10.04564 -9.59341 -8.72155 -5.09900 -0.12855 -0.04512 0.01404 0.03248 0.67618 0.93310 1.28136 1.58887 1.90040 1.98804 2.17559 2.32967 3.03288 3.41323 3.51234 3.57475 3.63731 3.69611 3.73658 3.94064 3.94748 4.05206 4.10204 4.28143 4.46588 4.49460 4.65520 4.72690 4.77489 4.80830 4.85070 4.88107 4.96357 5.05105 5.07113 5.10465 5.26802 5.46933 5.65887 5.89646 6.20012 6.73886 7.03666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.014 4.014 3 Si 0.731 3.269 4 C -0.310 4.310 5 C 0.103 3.897 6 N -0.578 5.578 7 C 0.318 3.682 8 N -0.665 5.665 9 C 0.134 3.866 10 H 0.088 0.912 11 C -0.144 4.144 12 C -0.062 4.062 13 H 0.125 0.875 14 C -0.065 4.065 15 C -0.075 4.075 16 C -0.140 4.140 17 C 0.077 3.923 18 F -0.143 7.143 19 C -0.087 4.087 20 Cl -0.064 7.064 21 C -0.084 4.084 22 C -0.129 4.129 23 S 0.120 5.880 24 H 0.395 0.605 25 H 0.117 0.883 26 H -0.274 1.274 27 H -0.267 1.267 28 H 0.175 0.825 29 H 0.426 0.574 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 6.392 -1.184 6.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.128 4.128 3 Si 0.635 3.365 4 C -0.433 4.433 5 C -0.047 4.047 6 N -0.304 5.304 7 C -0.053 4.053 8 N -0.305 5.305 9 C 0.026 3.974 10 H 0.107 0.893 11 C -0.183 4.183 12 C -0.080 4.080 13 H 0.143 0.857 14 C -0.065 4.065 15 C -0.093 4.093 16 C -0.158 4.158 17 C 0.057 3.943 18 F -0.122 7.122 19 C -0.114 4.114 20 Cl -0.035 7.035 21 C -0.102 4.102 22 C -0.167 4.167 23 S 0.369 5.631 24 H 0.245 0.755 25 H 0.134 0.866 26 H -0.200 1.200 27 H -0.193 1.193 28 H 0.192 0.808 29 H 0.266 0.734 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.179 0.821 34 H 0.170 0.830 35 H 0.109 0.891 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.958 6.787 -0.741 7.440 hybrid contribution -0.441 -1.717 0.120 1.777 sum 2.517 5.070 -0.621 5.694 Atomic orbital electron populations 1.86481 1.16988 1.82118 1.50281 1.24233 0.84894 1.09366 0.94310 0.94121 0.79142 0.75826 0.87420 1.25701 1.13126 0.99182 1.05256 1.21415 0.97707 0.93657 0.91956 1.66473 1.18176 1.34733 1.11023 1.23925 0.94859 0.93890 0.92604 1.43720 1.54007 1.14626 1.18156 1.21843 0.97436 0.84529 0.93599 0.89348 1.23603 0.96717 1.03087 0.94902 1.21663 0.97026 1.00538 0.88775 0.85675 1.19902 0.97583 0.92654 0.96372 1.21418 0.96086 1.01615 0.90139 1.21456 1.01555 0.91507 1.01322 1.17842 1.03437 0.92487 0.80532 1.91512 1.94139 1.81853 1.44684 1.21197 1.06613 0.87799 0.95824 1.98401 1.89510 1.17262 1.98374 1.21009 0.99008 0.94833 0.95357 1.23447 0.97305 1.02692 0.93270 1.83805 1.50762 1.12652 1.15886 0.75500 0.86574 1.19952 1.19280 0.80769 0.73367 0.88788 0.90968 0.81198 0.82112 0.82977 0.89103 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.15 12.87 -148.98 -1.92 -1.76 16 2 C -0.01 0.01 2.99 71.24 0.21 0.22 16 3 Si 0.73 -1.67 31.05 68.60 2.13 0.46 16 4 C -0.31 -0.14 5.74 24.58 0.14 0.00 16 5 C 0.10 0.35 11.22 83.54 0.94 1.29 16 6 N -0.58 -2.79 9.83 -202.02 -1.99 -4.78 16 7 C 0.32 0.05 8.09 179.32 1.45 1.50 16 8 N -0.67 3.58 5.42 -327.89 -1.78 1.81 16 9 C 0.13 -0.72 4.44 45.52 0.20 -0.52 16 10 H 0.09 -0.06 7.66 -2.39 -0.02 -0.08 16 11 C -0.14 0.93 7.25 31.12 0.23 1.16 16 12 C -0.06 0.60 3.86 -11.01 -0.04 0.56 16 13 H 0.13 -1.69 8.09 -2.39 -0.02 -1.71 16 14 C -0.06 0.39 5.29 -19.87 -0.11 0.28 16 15 C -0.07 0.51 9.70 22.26 0.22 0.73 16 16 C -0.14 0.38 10.03 22.31 0.22 0.60 16 17 C 0.08 0.25 7.28 22.39 0.16 0.41 16 18 F -0.14 -1.05 16.84 44.97 0.76 -0.30 16 19 C -0.09 -0.23 6.33 22.37 0.14 -0.09 16 20 Cl -0.06 -0.33 28.62 -2.72 -0.08 -0.40 16 21 C -0.08 0.19 8.38 22.29 0.19 0.38 16 22 C -0.13 1.16 7.29 31.12 0.23 1.39 16 23 S 0.12 -0.28 20.57 -56.49 -1.16 -1.44 16 24 H 0.39 -3.10 8.70 -74.05 -0.64 -3.75 16 25 H 0.12 -0.02 7.96 -2.39 -0.02 -0.04 16 26 H -0.27 -1.10 7.11 99.48 0.71 -0.39 16 27 H -0.27 -0.54 7.11 99.48 0.71 0.17 16 28 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 29 H 0.43 -4.56 8.83 -92.70 -0.82 -5.38 16 30 H 0.09 -0.55 6.32 -2.39 -0.02 -0.56 16 31 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.17 -2.22 8.05 -2.91 -0.02 -2.24 16 33 H 0.16 -1.02 8.06 -2.91 -0.02 -1.04 16 34 H 0.15 -0.70 6.67 -2.91 -0.02 -0.72 16 35 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.10 -0.82 7.71 -2.39 -0.02 -0.84 16 Total: 0.00 -15.93 339.70 -0.12 -16.05 By element: Atomic # 1 Polarization: -17.28 SS G_CDS: -0.27 Total: -17.55 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 4.18 Total: 7.91 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -3.76 Total: -2.97 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -1.92 Total: -1.76 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.76 Total: -0.30 kcal Atomic # 14 Polarization: -1.67 SS G_CDS: 2.13 Total: 0.46 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.16 Total: -1.44 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.40 kcal Total: -15.93 -0.12 -16.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10156536_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.868 kcal (2) G-P(sol) polarization free energy of solvation -15.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds