Wall clock time and date at job start Mon Mar 8 2021 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46774 * 2 1 4 4 C 1.50704 * 109.47473 * 240.00058 * 2 1 3 5 5 C 1.37976 * 120.32566 * 120.01738 * 4 2 1 6 6 N 1.32013 * 120.89878 * 179.70364 * 5 4 2 7 7 C 1.32343 * 121.64449 * 0.56934 * 6 5 4 8 8 N 1.39140 * 119.71566 * 179.71028 * 7 6 5 9 9 C 1.46506 * 120.00046 * 359.72948 * 8 7 6 10 10 H 1.08992 * 112.90684 * 336.24929 * 9 8 7 11 11 C 1.54049 * 113.61276 * 107.62018 * 9 8 7 12 12 C 1.53781 * 87.08031 * 89.07129 * 11 9 8 13 13 H 1.08999 * 113.61181 * 270.87794 * 12 11 9 14 14 C 1.50698 * 113.61565 * 139.97986 * 12 11 9 15 15 C 1.38215 * 119.97230 * 142.50631 * 14 12 11 16 16 C 1.38236 * 120.04872 * 179.97438 * 15 14 12 17 17 C 1.38393 * 119.99006 * 359.97438 * 16 15 14 18 18 F 1.35108 * 120.03406 * 180.02562 * 17 16 15 19 19 C 1.38594 * 119.93803 * 0.02562 * 17 16 15 20 20 Cl 1.73599 * 120.02311 * 180.02562 * 19 17 16 21 21 C 1.38263 * 119.96393 * 322.22204 * 14 12 11 22 22 C 1.53781 * 87.08070 * 25.42738 * 12 11 9 23 23 C 1.39339 * 120.56416 * 359.43421 * 7 6 5 24 24 F 1.35093 * 120.47246 * 180.25291 * 23 7 6 25 25 C 1.38449 * 119.05528 * 0.27904 * 23 7 6 26 26 H 0.96693 * 114.00485 * 299.99654 * 1 2 3 27 27 H 1.08997 * 109.47074 * 119.99792 * 2 1 3 28 28 H 1.48497 * 110.00430 * 299.99712 * 3 2 1 29 29 H 1.48502 * 110.00099 * 61.32095 * 3 2 1 30 30 H 1.07998 * 119.55698 * 359.97438 * 5 4 2 31 31 H 0.97002 * 120.00066 * 179.72733 * 8 7 6 32 32 H 1.09005 * 113.62125 * 334.52173 * 11 9 8 33 33 H 1.09003 * 113.61268 * 203.61961 * 11 9 8 34 34 H 1.08004 * 119.97253 * 359.96956 * 15 14 12 35 35 H 1.08010 * 120.00440 * 180.02562 * 16 15 14 36 36 H 1.07995 * 119.99889 * 359.97438 * 21 14 12 37 37 H 1.09002 * 113.61445 * 89.11830 * 22 12 11 38 38 H 1.09002 * 113.61408 * 219.93560 * 22 12 11 39 39 H 1.07999 * 120.75389 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7254 -0.0464 -2.1429 6 7 3.1765 -0.6593 -3.2215 7 6 2.8795 -1.9234 -3.4772 8 7 3.3719 -2.5282 -4.6295 9 6 4.2104 -1.7641 -5.5567 10 1 4.0513 -0.6883 -5.4845 11 6 5.6952 -2.1738 -5.5265 12 6 5.3496 -3.2110 -6.6081 13 1 5.0367 -4.1742 -6.2051 14 6 6.4004 -3.3374 -7.6809 15 6 6.6943 -4.5770 -8.2170 16 6 7.6574 -4.6947 -9.2015 17 6 8.3277 -3.5706 -9.6514 18 9 9.2689 -3.6845 -10.6141 19 6 8.0326 -2.3278 -9.1136 20 17 8.8716 -0.9162 -9.6767 21 6 7.0653 -2.2123 -8.1322 22 6 4.1768 -2.2965 -6.9991 23 6 2.0826 -2.6555 -2.5994 24 9 1.7848 -3.9473 -2.8597 25 6 1.5999 -2.0401 -1.4570 26 1 -0.3934 0.4416 0.7650 27 1 1.7923 -0.5138 0.8900 28 1 1.5614 2.4679 -1.2085 29 1 1.5878 2.4586 1.2243 30 1 2.9850 0.9876 -1.9701 31 1 3.1601 -3.4556 -4.8190 32 1 6.0069 -2.6167 -4.5806 33 1 6.3711 -1.3915 -5.8719 34 1 6.1710 -5.4543 -7.8663 35 1 7.8862 -5.6637 -9.6202 36 1 6.8313 -1.2436 -7.7162 37 1 4.4375 -1.5477 -7.7470 38 1 3.2631 -2.8384 -7.2433 39 1 0.9803 -2.5818 -0.7577 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10156536_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:46:11 Heat of formation + Delta-G solvation = -19.007613 kcal Electronic energy + Delta-G solvation = -27313.546284 eV Core-core repulsion = 22885.937356 eV Total energy + Delta-G solvation = -4427.608928 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.073 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.04528 -49.94539 -41.62342 -41.00884 -39.27959 -37.96016 -37.57554 -35.50882 -33.25668 -32.08325 -31.96190 -30.76932 -26.81977 -26.63241 -25.98845 -24.85926 -24.14657 -22.87988 -22.62408 -20.28907 -19.46603 -18.91079 -18.63110 -18.14850 -18.02693 -17.72567 -17.14858 -16.91340 -16.85461 -16.44434 -16.19433 -15.83121 -15.72667 -15.13694 -15.02213 -14.95606 -14.72590 -14.38095 -14.22715 -14.16856 -14.14779 -13.96209 -13.67308 -13.57698 -13.42627 -12.68198 -12.59632 -12.51038 -12.15205 -12.08239 -11.89669 -11.79567 -11.25335 -11.09834 -10.71082 -10.69335 -10.41079 -10.04565 -9.59395 -8.74300 -4.88912 -0.13062 -0.07708 0.01363 0.11907 0.93558 1.32082 1.64152 1.95744 1.99588 2.32620 2.51866 3.02767 3.03726 3.22667 3.39248 3.46603 3.59724 3.66301 3.66980 3.73118 3.87742 3.95333 4.05066 4.08974 4.09959 4.27461 4.39178 4.46779 4.49350 4.69185 4.73231 4.79155 4.85305 4.86841 4.88935 4.99347 5.01968 5.04821 5.09476 5.20086 5.41042 5.50465 5.65034 6.02473 6.21583 6.62101 6.97238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.071 4.071 3 Si 0.760 3.240 4 C -0.168 4.168 5 C 0.146 3.854 6 N -0.523 5.523 7 C 0.384 3.616 8 N -0.695 5.695 9 C 0.131 3.869 10 H 0.101 0.899 11 C -0.141 4.141 12 C -0.066 4.066 13 H 0.116 0.884 14 C -0.064 4.064 15 C -0.078 4.078 16 C -0.140 4.140 17 C 0.077 3.923 18 F -0.143 7.143 19 C -0.085 4.085 20 Cl -0.062 7.062 21 C -0.081 4.081 22 C -0.132 4.132 23 C -0.036 4.036 24 F -0.139 7.139 25 C -0.042 4.042 26 H 0.397 0.603 27 H 0.101 0.899 28 H -0.294 1.294 29 H -0.284 1.284 30 H 0.181 0.819 31 H 0.417 0.583 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 -0.941 4.480 4.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.180 4.180 3 Si 0.664 3.336 4 C -0.173 4.173 5 C -0.011 4.011 6 N -0.240 5.240 7 C 0.146 3.854 8 N -0.327 5.327 9 C 0.025 3.975 10 H 0.119 0.881 11 C -0.180 4.180 12 C -0.084 4.084 13 H 0.134 0.866 14 C -0.064 4.064 15 C -0.096 4.096 16 C -0.158 4.158 17 C 0.057 3.943 18 F -0.121 7.121 19 C -0.113 4.113 20 Cl -0.033 7.033 21 C -0.100 4.100 22 C -0.170 4.170 23 C -0.062 4.062 24 F -0.118 7.118 25 C -0.069 4.069 26 H 0.247 0.753 27 H 0.119 0.881 28 H -0.221 1.221 29 H -0.211 1.211 30 H 0.197 0.803 31 H 0.256 0.744 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.078 0.203 3.113 3.120 hybrid contribution -1.421 -1.061 0.517 1.847 sum -1.499 -0.858 3.630 4.020 Atomic orbital electron populations 1.86538 1.18553 1.80712 1.51216 1.24768 0.84013 1.11561 0.97638 0.94288 0.90240 0.72053 0.76970 1.20034 1.03576 0.94147 0.99504 1.22616 0.91636 0.99685 0.87153 1.67352 1.27001 1.07597 1.22025 1.18520 0.90110 0.89189 0.87609 1.44246 1.53899 1.14580 1.20021 1.21871 0.90055 0.96900 0.88624 0.88121 1.23644 0.96779 0.98810 0.98794 1.21631 0.93390 0.99975 0.93380 0.86639 1.19889 0.97030 0.92180 0.97349 1.21391 0.95493 0.98630 0.94084 1.21427 0.97369 0.97877 0.99174 1.17819 0.91632 0.93953 0.90852 1.91516 1.62739 1.96775 1.61102 1.21180 1.00866 0.87315 1.01896 1.98401 1.77193 1.39012 1.88677 1.21011 0.93478 1.01141 0.94352 1.23451 0.98404 0.99330 0.95780 1.18088 1.07763 0.80919 0.99421 1.91465 1.92349 1.33907 1.94062 1.21435 0.95842 0.94789 0.94800 0.75263 0.88144 1.22139 1.21097 0.80274 0.74432 0.91195 0.88169 0.81684 0.82207 0.82589 0.87834 0.89936 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.15 12.75 -148.98 -1.90 -1.75 16 2 C -0.07 0.23 2.83 71.24 0.20 0.43 16 3 Si 0.76 -3.52 29.82 68.60 2.05 -1.47 16 4 C -0.17 -0.07 5.43 -19.77 -0.11 -0.18 16 5 C 0.15 0.08 9.84 84.60 0.83 0.91 16 6 N -0.52 -1.60 9.13 -193.04 -1.76 -3.37 16 7 C 0.38 1.00 7.49 133.08 1.00 2.00 16 8 N -0.69 1.31 5.42 -321.35 -1.74 -0.43 16 9 C 0.13 -0.54 4.37 45.61 0.20 -0.34 16 10 H 0.10 -0.15 7.41 -2.39 -0.02 -0.17 16 11 C -0.14 0.79 7.26 31.21 0.23 1.01 16 12 C -0.07 0.48 3.86 -11.01 -0.04 0.44 16 13 H 0.12 -1.10 8.09 -2.39 -0.02 -1.12 16 14 C -0.06 0.29 5.29 -19.86 -0.11 0.18 16 15 C -0.08 0.39 9.71 22.26 0.22 0.60 16 16 C -0.14 0.21 10.02 22.31 0.22 0.43 16 17 C 0.08 0.30 7.28 22.39 0.16 0.46 16 18 F -0.14 -1.11 16.84 44.97 0.76 -0.35 16 19 C -0.09 -0.25 6.33 22.36 0.14 -0.11 16 20 Cl -0.06 -0.30 28.62 -2.72 -0.08 -0.38 16 21 C -0.08 0.15 8.38 22.29 0.19 0.34 16 22 C -0.13 0.91 7.28 31.12 0.23 1.14 16 23 C -0.04 -0.12 7.35 22.59 0.17 0.05 16 24 F -0.14 -0.56 16.65 44.97 0.75 0.19 16 25 C -0.04 -0.09 9.75 22.48 0.22 0.13 16 26 H 0.40 -3.24 8.74 -74.06 -0.65 -3.88 16 27 H 0.10 -0.76 7.96 -2.39 -0.02 -0.78 16 28 H -0.29 -0.76 7.11 99.48 0.71 -0.06 16 29 H -0.28 0.07 7.11 99.48 0.71 0.78 16 30 H 0.18 -0.76 4.88 -2.91 -0.01 -0.77 16 31 H 0.42 -1.82 8.17 -92.71 -0.76 -2.58 16 32 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 33 H 0.10 -0.63 6.32 -2.39 -0.02 -0.64 16 34 H 0.17 -1.71 8.05 -2.91 -0.02 -1.73 16 35 H 0.16 -0.80 8.06 -2.91 -0.02 -0.83 16 36 H 0.16 -0.76 6.67 -2.91 -0.02 -0.78 16 37 H 0.10 -0.75 7.71 -2.39 -0.02 -0.76 16 38 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 Total: 0.00 -15.89 352.31 1.59 -14.30 By element: Atomic # 1 Polarization: -14.01 SS G_CDS: -0.22 Total: -14.23 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 3.74 Total: 7.49 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -3.50 Total: -3.80 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -1.90 Total: -1.75 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 1.51 Total: -0.16 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.05 Total: -1.47 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -15.89 1.59 -14.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10156536_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.706 kcal (2) G-P(sol) polarization free energy of solvation -15.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds