Wall clock time and date at job start Mon Mar 8 2021 06:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.53000 * 109.47133 * 239.99656 * 2 1 3 5 5 O 1.45203 * 109.47223 * 119.99580 * 2 1 3 6 6 C 1.34637 * 116.99693 * 60.00311 * 5 2 1 7 7 O 1.21517 * 119.99970 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00320 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00574 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47278 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.46870 * 304.99909 * 10 9 8 12 12 C 1.53002 * 109.47346 * 64.99726 * 10 9 8 13 13 C 1.52996 * 109.46972 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47165 * 300.00293 * 13 12 10 15 15 H 1.09000 * 109.47140 * 299.99954 * 14 13 12 16 16 C 1.53006 * 109.46974 * 180.02562 * 14 13 12 17 17 N 1.46498 * 109.47099 * 64.99742 * 16 14 13 18 18 C 1.38611 * 119.99408 * 179.97438 * 17 16 14 19 19 N 1.29681 * 124.95496 * 359.69939 * 18 17 16 20 20 C 1.32123 * 116.86890 * 179.81446 * 19 18 17 21 21 C 1.33322 * 114.57759 * 0.46803 * 20 19 18 22 22 C 1.50696 * 125.95229 * 179.75470 * 21 20 19 23 23 O 1.42898 * 109.47314 * 64.97884 * 22 21 20 24 24 Si 1.86302 * 109.47401 * 184.98019 * 22 21 20 25 25 S 1.70968 * 124.94563 * 180.02562 * 18 17 16 26 26 C 1.52999 * 109.47592 * 60.00300 * 14 13 12 27 27 C 1.52997 * 109.46975 * 185.00131 * 10 9 8 28 28 H 1.09007 * 109.46904 * 300.00328 * 1 2 3 29 29 H 1.08994 * 109.47459 * 59.99839 * 1 2 3 30 30 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47102 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46803 * 299.99871 * 3 2 1 33 33 H 1.08998 * 109.47444 * 60.00258 * 3 2 1 34 34 H 1.08996 * 109.47439 * 300.00451 * 4 2 1 35 35 H 1.09004 * 109.46578 * 59.99880 * 4 2 1 36 36 H 1.08997 * 109.47211 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99390 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.46561 * 59.99811 * 9 8 6 39 39 H 1.09001 * 109.46647 * 300.00128 * 9 8 6 40 40 H 1.08992 * 109.46974 * 300.00318 * 12 10 9 41 41 H 1.08996 * 109.46550 * 60.00424 * 12 10 9 42 42 H 1.09000 * 109.47054 * 60.00300 * 13 12 10 43 43 H 1.09001 * 109.46997 * 180.02562 * 13 12 10 44 44 H 1.09006 * 109.47001 * 185.00183 * 16 14 13 45 45 H 1.08998 * 109.47136 * 304.99640 * 16 14 13 46 46 H 0.96998 * 120.00310 * 0.02562 * 17 16 14 47 47 H 1.08004 * 122.71211 * 180.23020 * 20 19 18 48 48 H 1.09002 * 109.47417 * 304.97830 * 22 21 20 49 49 H 0.96697 * 114.00307 * 180.02562 * 23 22 21 50 50 H 1.48513 * 109.99775 * 299.99964 * 24 22 21 51 51 H 1.48504 * 110.00093 * 61.31486 * 24 22 21 52 52 H 1.08993 * 109.47839 * 180.02562 * 26 14 13 53 53 H 1.09000 * 109.47160 * 59.99666 * 26 14 13 54 54 H 1.09001 * 109.46922 * 59.99912 * 27 10 9 55 55 H 1.09000 * 109.47140 * 299.99612 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6740 -4.0668 2.5833 10 6 2.2742 -4.6148 3.8796 11 1 3.3539 -4.4649 3.8718 12 6 1.6657 -3.8783 5.0747 13 6 2.2654 -4.4268 6.3709 14 6 1.9583 -5.9214 6.4826 15 1 0.8786 -6.0709 6.4900 16 6 2.5576 -6.4697 7.7792 17 7 1.8895 -5.8500 8.9263 18 6 2.2654 -6.1931 10.2156 19 7 3.1891 -7.0521 10.5164 20 6 3.4202 -7.2550 11.8014 21 6 2.6497 -6.5415 12.6228 22 6 2.6919 -6.5765 14.1288 23 8 3.9518 -6.0769 14.5818 24 14 1.3212 -5.5166 14.8133 25 16 1.5733 -5.5512 11.6410 26 6 2.5669 -6.6579 5.2876 27 6 1.9677 -6.1095 3.9916 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.6283 -2.2369 3.0825 38 1 2.0398 -4.6499 1.7381 39 1 0.5872 -4.1355 2.6290 40 1 1.8841 -2.8135 4.9948 41 1 0.5861 -4.0283 5.0823 42 1 3.3451 -4.2772 6.3634 43 1 1.8315 -3.9024 7.2223 44 1 2.4164 -7.5500 7.8164 45 1 3.6229 -6.2413 7.8122 46 1 1.1837 -5.2001 8.7835 47 1 4.1699 -7.9461 12.1576 48 1 2.5634 -7.6030 14.4722 49 1 4.0496 -6.0707 15.5438 50 1 1.4850 -4.1144 14.3524 51 1 0.0040 -6.0446 14.3755 52 1 2.3478 -7.7226 5.3668 53 1 3.6466 -6.5084 5.2801 54 1 2.4013 -6.6341 3.1401 55 1 0.8880 -6.2594 3.9993 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10267930_15704118.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:55:02 Heat of formation + Delta-G solvation = -80.528053 kcal Electronic energy + Delta-G solvation = -32786.698496 eV Core-core repulsion = 28337.406625 eV Total energy + Delta-G solvation = -4449.291871 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.192 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.86697 -40.92137 -40.23985 -38.54990 -37.88807 -37.04431 -35.79402 -34.94288 -32.91390 -31.76020 -31.35286 -28.58249 -28.40738 -28.33547 -26.56183 -25.52768 -24.21760 -23.86107 -22.97255 -21.90288 -21.21603 -20.84775 -20.54692 -19.67500 -19.22819 -18.43044 -17.70707 -17.64736 -17.36040 -16.63351 -16.55538 -16.23489 -16.04443 -15.77112 -15.74585 -15.51119 -15.34682 -15.17994 -14.90782 -14.79266 -14.58920 -14.45672 -14.33705 -14.19769 -13.67805 -13.39700 -13.19996 -13.14711 -12.96663 -12.95785 -12.90563 -12.81373 -12.77191 -12.55168 -12.47224 -12.35217 -12.16997 -12.05726 -11.96946 -11.47416 -11.43452 -11.35861 -11.20379 -11.15439 -10.99643 -10.77578 -10.42728 -10.25347 -10.23453 -8.85088 -5.19380 -0.19435 -0.04788 0.51021 1.14306 1.23658 1.56578 1.71511 1.85615 1.91964 2.07567 3.12557 3.42193 3.51821 3.59658 3.68432 3.69128 3.70676 3.75799 3.90690 3.91642 3.97963 4.06342 4.13332 4.41398 4.43097 4.45860 4.47376 4.48931 4.55980 4.57434 4.59083 4.62762 4.65092 4.67224 4.72542 4.72870 4.77765 4.82209 4.83867 4.90192 4.97623 5.02503 5.04923 5.12267 5.17333 5.21724 5.23139 5.23602 5.28490 5.32206 5.37842 5.52362 5.55565 5.72444 6.01798 6.34534 6.84938 6.92667 7.29474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.699 5.699 9 C 0.143 3.857 10 C -0.089 4.089 11 H 0.087 0.913 12 C -0.112 4.112 13 C -0.112 4.112 14 C -0.090 4.090 15 H 0.084 0.916 16 C 0.143 3.857 17 N -0.682 5.682 18 C 0.327 3.673 19 N -0.572 5.572 20 C 0.111 3.889 21 C -0.274 4.274 22 C -0.023 4.023 23 O -0.564 6.564 24 Si 0.755 3.245 25 S 0.049 5.951 26 C -0.106 4.106 27 C -0.108 4.108 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.415 0.585 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.422 0.578 47 H 0.190 0.810 48 H 0.107 0.893 49 H 0.405 0.595 50 H -0.285 1.285 51 H -0.276 1.276 52 H 0.071 0.929 53 H 0.069 0.931 54 H 0.073 0.927 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 0.778 3.907 3.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.394 3.606 7 O -0.487 6.487 8 N -0.360 5.360 9 C 0.021 3.979 10 C -0.107 4.107 11 H 0.105 0.895 12 C -0.150 4.150 13 C -0.149 4.149 14 C -0.109 4.109 15 H 0.102 0.898 16 C 0.018 3.982 17 N -0.322 5.322 18 C -0.044 4.044 19 N -0.299 5.299 20 C -0.039 4.039 21 C -0.397 4.397 22 C -0.136 4.136 23 O -0.374 6.374 24 Si 0.660 3.340 25 S 0.297 5.703 26 C -0.144 4.144 27 C -0.146 4.146 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.262 0.738 47 H 0.207 0.793 48 H 0.124 0.876 49 H 0.256 0.744 50 H -0.212 1.212 51 H -0.202 1.202 52 H 0.090 0.910 53 H 0.088 0.912 54 H 0.091 0.909 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.354 1.532 2.247 3.038 hybrid contribution 0.718 -0.464 -0.097 0.860 sum -0.636 1.068 2.150 2.484 Atomic orbital electron populations 1.22471 0.94043 1.03654 1.03523 1.22354 0.94470 0.92597 0.81519 1.21893 1.02455 0.90860 1.04261 1.22473 1.01632 1.02228 0.97390 1.86309 1.71575 1.23334 1.47281 1.18378 0.78823 0.80800 0.82552 1.90909 1.42336 1.71055 1.44391 1.44770 1.55150 1.12970 1.23070 1.21458 0.99909 0.78146 0.98416 1.21363 1.01140 0.95938 0.92290 0.89514 1.21586 1.00477 0.99494 0.93433 1.21573 1.01431 0.94379 0.97526 1.21375 1.01126 0.95717 0.92672 0.89790 1.21480 0.96506 0.97116 0.83140 1.44203 1.41505 1.47128 0.99404 1.24001 0.93924 0.94360 0.92126 1.66484 1.21267 1.22230 1.19935 1.21609 0.98332 0.98759 0.85220 1.24647 1.07039 1.07877 1.00104 1.23843 0.95438 1.05637 0.88698 1.86468 1.34154 1.87218 1.29570 0.94233 0.74400 0.76349 0.89030 1.84112 1.41052 1.46247 0.98881 1.21430 1.00601 0.99684 0.92710 1.21447 1.01745 0.93466 0.97900 0.91949 0.89433 0.91844 0.91189 0.88283 0.91181 0.91844 0.89426 0.91945 0.74775 0.91740 0.91806 0.91477 0.91575 0.91605 0.91824 0.92106 0.92206 0.73850 0.79315 0.87558 0.74357 1.21159 1.20202 0.91012 0.91247 0.90874 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 2 C 0.13 0.44 1.13 -10.79 -0.01 0.42 16 3 C -0.14 0.23 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.68 8.37 71.98 0.60 -0.07 16 5 O -0.37 -2.22 9.94 -55.46 -0.55 -2.77 16 6 C 0.64 4.60 8.06 129.79 1.05 5.65 16 7 O -0.60 -7.58 11.88 19.79 0.24 -7.35 16 8 N -0.70 -0.30 5.29 -590.85 -3.12 -3.42 16 9 C 0.14 -0.24 5.06 86.38 0.44 0.20 16 10 C -0.09 0.55 2.23 -10.80 -0.02 0.53 16 11 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 12 C -0.11 0.73 5.08 30.59 0.16 0.89 16 13 C -0.11 0.70 5.08 30.59 0.16 0.86 16 14 C -0.09 0.54 2.22 -10.79 -0.02 0.51 16 15 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 16 C 0.14 -0.20 5.34 86.38 0.46 0.26 16 17 N -0.68 -0.33 5.44 -351.00 -1.91 -2.24 16 18 C 0.33 2.12 8.09 179.32 1.45 3.57 16 19 N -0.57 -5.46 10.14 -202.03 -2.05 -7.51 16 20 C 0.11 0.83 11.24 83.54 0.94 1.77 16 21 C -0.27 -1.75 5.76 24.57 0.14 -1.61 16 22 C -0.02 0.00 2.98 71.23 0.21 0.21 16 23 O -0.56 0.03 12.86 -148.98 -1.92 -1.89 16 24 Si 0.76 -0.85 31.07 68.60 2.13 1.29 16 25 S 0.05 0.32 20.59 -56.49 -1.16 -0.85 16 26 C -0.11 0.67 5.20 30.58 0.16 0.83 16 27 C -0.11 0.69 5.20 30.58 0.16 0.85 16 28 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 29 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 31 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.15 16 34 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 35 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 36 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.42 -1.57 7.77 -92.71 -0.72 -2.29 16 38 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.07 -0.43 7.18 -2.39 -0.02 -0.45 16 41 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.06 -0.39 7.18 -2.39 -0.02 -0.40 16 44 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 45 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.42 -1.52 7.78 -92.71 -0.72 -2.24 16 47 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 48 H 0.11 -0.52 7.96 -2.39 -0.02 -0.54 16 49 H 0.40 -4.48 8.74 -74.06 -0.65 -5.13 16 50 H -0.28 -1.84 7.11 99.48 0.71 -1.13 16 51 H -0.28 -1.14 7.11 99.48 0.71 -0.44 16 52 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 53 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 54 H 0.07 -0.46 8.14 -2.39 -0.02 -0.47 16 55 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -21.60 440.80 -2.40 -23.99 By element: Atomic # 1 Polarization: -13.78 SS G_CDS: -1.15 Total: -14.93 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 7.10 Total: 15.68 kcal Atomic # 7 Polarization: -6.09 SS G_CDS: -7.08 Total: -13.17 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -2.23 Total: -12.01 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: 2.13 Total: 1.29 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.16 Total: -0.85 kcal Total: -21.60 -2.40 -23.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10267930_15704118.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.535 kcal (2) G-P(sol) polarization free energy of solvation -21.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds