Wall clock time and date at job start Mon Mar 8 2021 04:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47059 * 2 1 4 4 C 1.50697 * 109.47362 * 240.00083 * 2 1 3 5 5 C 1.38017 * 120.33713 * 119.99271 * 4 2 1 6 6 N 1.31972 * 120.85816 * 180.02562 * 5 4 2 7 7 C 1.32396 * 121.62200 * 359.97438 * 6 5 4 8 8 N 1.39005 * 119.70681 * 179.97438 * 7 6 5 9 9 C 1.46504 * 119.99841 * 180.02562 * 8 7 6 10 10 H 1.08999 * 112.85136 * 336.19733 * 9 8 7 11 11 C 1.53779 * 113.61484 * 107.50129 * 9 8 7 12 12 C 1.53785 * 87.08093 * 89.11287 * 11 9 8 13 13 H 1.09002 * 113.61570 * 270.88522 * 12 11 9 14 14 C 1.50701 * 113.69000 * 139.98979 * 12 11 9 15 15 C 1.38240 * 119.99122 * 320.66830 * 14 12 11 16 16 C 1.38215 * 120.00834 * 179.72913 * 15 14 12 17 17 C 1.38330 * 119.99232 * 0.53842 * 16 15 14 18 18 Br 1.89096 * 120.01048 * 179.70796 * 17 16 15 19 19 C 1.38328 * 119.97598 * 359.72965 * 17 16 15 20 20 C 1.38213 * 119.99042 * 0.02562 * 19 17 16 21 21 C 1.53781 * 87.08241 * 25.43228 * 12 11 9 22 22 C 1.39147 * 120.58871 * 0.27624 * 7 6 5 23 23 C 1.38296 * 119.09363 * 359.47432 * 22 7 6 24 24 H 0.96697 * 114.00415 * 60.00058 * 1 2 3 25 25 H 1.09001 * 109.47263 * 119.99758 * 2 1 3 26 26 H 1.48501 * 110.00040 * 59.99724 * 3 2 1 27 27 H 1.48496 * 110.00389 * 181.31904 * 3 2 1 28 28 H 1.08000 * 119.57249 * 0.02895 * 5 4 2 29 29 H 0.96996 * 120.00206 * 359.97438 * 8 7 6 30 30 H 1.09003 * 113.61775 * 334.57164 * 11 9 8 31 31 H 1.08996 * 113.61960 * 203.65890 * 11 9 8 32 32 H 1.08000 * 119.99200 * 359.97158 * 15 14 12 33 33 H 1.08005 * 120.00691 * 180.29225 * 16 15 14 34 34 H 1.07999 * 120.00030 * 180.02562 * 19 17 16 35 35 H 1.08002 * 119.99307 * 179.97438 * 20 19 17 36 36 H 1.09005 * 113.61302 * 89.11252 * 21 12 11 37 37 H 1.08993 * 113.62030 * 220.02098 * 21 12 11 38 38 H 1.07997 * 120.44907 * 179.69993 * 22 7 6 39 39 H 1.07995 * 120.74833 * 180.26208 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7252 -0.0463 -2.1435 6 7 3.1704 -0.6582 -3.2247 7 6 2.8768 -1.9245 -3.4762 8 7 3.3668 -2.5296 -4.6278 9 6 3.0455 -3.9303 -4.9126 10 1 2.7934 -4.4974 -4.0166 11 6 2.0389 -4.1101 -6.0612 12 6 3.2477 -4.1385 -7.0114 13 1 3.5420 -3.1533 -7.3731 14 6 3.1252 -5.1554 -8.1168 15 6 2.5752 -6.3966 -7.8562 16 6 2.4575 -7.3275 -8.8710 17 6 2.9003 -7.0210 -10.1452 18 35 2.7471 -8.2972 -11.5322 19 6 3.4557 -5.7809 -10.4043 20 6 3.5683 -4.8488 -9.3899 21 6 4.0783 -4.6282 -5.8133 22 6 2.0771 -2.6532 -2.6012 23 6 1.6003 -2.0401 -1.4570 24 1 -0.3934 0.4417 -0.7650 25 1 1.7924 -0.5138 0.8900 26 1 1.5614 2.4679 1.2085 27 1 3.5345 1.7704 -0.0321 28 1 2.9854 0.9876 -1.9710 29 1 3.9208 -2.0242 -5.2431 30 1 1.3872 -3.2490 -6.2096 31 1 1.4935 -5.0529 -6.0203 32 1 2.2339 -6.6375 -6.8602 33 1 2.0235 -8.2955 -8.6684 34 1 3.8011 -5.5410 -11.3990 35 1 4.0023 -3.8807 -9.5921 36 1 4.0904 -5.7127 -5.7045 37 1 5.0729 -4.1855 -5.7613 38 1 1.8351 -3.6846 -2.8111 39 1 0.9810 -2.5817 -0.7575 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10390342_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:36:17 Heat of formation + Delta-G solvation = 77.303392 kcal Electronic energy + Delta-G solvation = -22497.585632 eV Core-core repulsion = 19033.042804 eV Total energy + Delta-G solvation = -3464.542828 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.042 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67509 -40.96970 -39.31621 -37.82376 -35.40477 -33.48861 -33.08472 -32.05121 -31.25061 -30.14783 -26.70765 -26.64402 -25.58909 -24.69071 -23.88812 -22.85901 -22.12939 -20.07986 -18.98527 -18.41063 -17.83695 -17.36082 -16.63995 -16.49476 -16.24750 -16.09171 -15.85495 -15.62896 -15.26782 -14.85655 -14.68964 -14.47628 -14.37968 -14.18931 -14.01148 -13.56083 -13.41805 -13.32334 -12.86170 -12.45006 -12.30591 -12.17434 -12.09879 -11.81340 -11.48352 -11.28687 -11.21684 -11.00335 -10.73101 -10.40424 -10.37320 -10.01735 -9.51561 -8.67889 -4.98595 0.05278 0.23584 0.31791 0.41427 0.65289 1.35045 1.63937 1.97680 2.07184 2.56303 2.83672 3.45853 3.56192 3.62230 3.65241 3.71072 3.80058 3.83083 3.94887 3.97686 4.00235 4.10936 4.20135 4.34222 4.38144 4.42561 4.51647 4.60678 4.71331 4.77000 4.79857 4.84228 4.92833 5.02685 5.05651 5.07895 5.17122 5.23436 5.26102 5.35520 5.55657 5.61755 5.83480 6.07334 6.54999 6.80689 7.15498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.053 4.053 3 Si 0.764 3.236 4 C -0.237 4.237 5 C 0.145 3.855 6 N -0.565 5.565 7 C 0.397 3.603 8 N -0.702 5.702 9 C 0.129 3.871 10 H 0.109 0.891 11 C -0.142 4.142 12 C -0.072 4.072 13 H 0.101 0.899 14 C -0.056 4.056 15 C -0.111 4.111 16 C -0.098 4.098 17 C -0.111 4.111 18 Br -0.064 7.064 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.240 4.240 23 C -0.013 4.013 24 H 0.394 0.606 25 H 0.107 0.893 26 H -0.297 1.297 27 H -0.287 1.287 28 H 0.166 0.834 29 H 0.407 0.593 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 -0.161 -0.330 0.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.164 4.164 3 Si 0.671 3.329 4 C -0.242 4.242 5 C -0.012 4.012 6 N -0.283 5.283 7 C 0.161 3.839 8 N -0.333 5.333 9 C 0.023 3.977 10 H 0.127 0.873 11 C -0.181 4.181 12 C -0.090 4.090 13 H 0.120 0.880 14 C -0.056 4.056 15 C -0.130 4.130 16 C -0.117 4.117 17 C -0.190 4.190 18 Br 0.022 6.978 19 C -0.120 4.120 20 C -0.137 4.137 21 C -0.167 4.167 22 C -0.265 4.265 23 C -0.039 4.039 24 H 0.244 0.756 25 H 0.125 0.875 26 H -0.225 1.225 27 H -0.214 1.214 28 H 0.183 0.817 29 H 0.243 0.757 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.170 0.830 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.102 -0.115 -0.514 0.536 hybrid contribution -0.027 -0.542 0.527 0.756 sum 0.075 -0.657 0.013 0.661 Atomic orbital electron populations 1.86451 1.17371 1.82097 1.50483 1.24821 0.85066 1.10001 0.96560 0.93861 0.77906 0.75991 0.85138 1.21042 1.05800 0.96910 1.00454 1.22435 0.91688 0.99212 0.87864 1.67131 1.28238 1.09969 1.22944 1.18613 0.89504 0.88401 0.87346 1.44250 1.55584 1.11679 1.21830 1.21957 0.96648 0.80896 0.98247 0.87315 1.23647 0.96213 1.03578 0.94687 1.21616 0.98191 0.97439 0.91792 0.88037 1.20035 0.96130 0.94928 0.94506 1.21263 0.99237 0.92552 0.99932 1.21333 0.98513 1.00852 0.91049 1.21984 1.07436 0.95458 0.94143 1.96754 1.97423 1.55603 1.48044 1.21298 0.98030 0.91900 1.00745 1.21335 1.00030 1.00020 0.92271 1.23424 0.98131 1.01980 0.93139 1.21708 1.04963 1.02649 0.97134 1.21399 0.93947 0.93316 0.95209 0.75614 0.87546 1.22482 1.21421 0.81731 0.75716 0.91448 0.87415 0.82853 0.84194 0.84612 0.83815 0.87269 0.90478 0.82982 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.25 12.78 -148.98 -1.90 -1.65 16 2 C -0.05 0.05 2.84 71.23 0.20 0.25 16 3 Si 0.76 -1.44 29.82 68.60 2.05 0.61 16 4 C -0.24 -0.10 5.40 -19.76 -0.11 -0.21 16 5 C 0.14 0.27 9.84 84.62 0.83 1.10 16 6 N -0.57 -2.66 10.39 -193.26 -2.01 -4.66 16 7 C 0.40 0.71 7.65 133.07 1.02 1.72 16 8 N -0.70 1.91 5.44 -322.02 -1.75 0.16 16 9 C 0.13 -0.91 4.11 45.52 0.19 -0.73 16 10 H 0.11 -0.94 6.11 -2.39 -0.01 -0.95 16 11 C -0.14 1.05 7.26 31.12 0.23 1.27 16 12 C -0.07 0.49 3.85 -11.01 -0.04 0.45 16 13 H 0.10 -0.69 8.09 -2.39 -0.02 -0.71 16 14 C -0.06 0.21 5.29 -19.86 -0.11 0.10 16 15 C -0.11 0.44 8.53 22.26 0.19 0.63 16 16 C -0.10 0.07 9.79 22.29 0.22 0.29 16 17 C -0.11 -0.21 6.22 22.31 0.14 -0.07 16 18 Br -0.06 -0.20 33.70 -20.37 -0.69 -0.89 16 19 C -0.10 -0.05 9.79 22.29 0.22 0.17 16 20 C -0.12 0.24 9.71 22.27 0.22 0.45 16 21 C -0.13 1.03 7.29 31.12 0.23 1.26 16 22 C -0.24 0.13 9.28 22.50 0.21 0.34 16 23 C -0.01 0.00 9.77 22.44 0.22 0.22 16 24 H 0.39 -3.17 8.70 -74.06 -0.64 -3.81 16 25 H 0.11 0.00 7.96 -2.39 -0.02 -0.01 16 26 H -0.30 -1.61 7.11 99.48 0.71 -0.90 16 27 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 28 H 0.17 -0.33 4.88 -2.91 -0.01 -0.34 16 29 H 0.41 -1.23 8.82 -92.71 -0.82 -2.05 16 30 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.11 -1.02 6.41 -2.39 -0.02 -1.04 16 32 H 0.15 -1.36 6.73 -2.91 -0.02 -1.38 16 33 H 0.14 -0.41 8.06 -2.91 -0.02 -0.43 16 34 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 35 H 0.14 -0.77 8.05 -2.91 -0.02 -0.79 16 36 H 0.11 -1.03 7.62 -2.38 -0.02 -1.05 16 37 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.15 -0.77 6.04 -2.91 -0.02 -0.78 16 39 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 16 Total: 0.00 -14.27 342.82 -0.78 -15.04 By element: Atomic # 1 Polarization: -15.55 SS G_CDS: -0.32 Total: -15.86 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 3.85 Total: 7.26 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -3.76 Total: -4.51 kcal Atomic # 8 Polarization: 0.25 SS G_CDS: -1.90 Total: -1.65 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: 2.05 Total: 0.61 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.69 Total: -0.89 kcal Total: -14.27 -0.78 -15.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10390342_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.344 kcal (2) G-P(sol) polarization free energy of solvation -14.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds