Wall clock time and date at job start Mon Mar 8 2021 04:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86297 * 109.46956 * 2 1 4 4 C 1.50700 * 109.46939 * 240.00268 * 2 1 3 5 5 C 1.33323 * 125.95232 * 299.71580 * 4 2 1 6 6 N 1.32115 * 114.58155 * 180.26254 * 5 4 2 7 7 C 1.29684 * 116.86695 * 0.02562 * 6 5 4 8 8 N 1.38608 * 124.95078 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00285 * 0.02562 * 8 7 6 10 10 H 1.09003 * 112.85164 * 336.19725 * 9 8 7 11 11 C 1.53787 * 113.61518 * 107.49616 * 9 8 7 12 12 C 1.53782 * 87.07720 * 89.12178 * 11 9 8 13 13 H 1.08995 * 113.61093 * 270.87767 * 12 11 9 14 14 C 1.50707 * 113.61167 * 139.98368 * 12 11 9 15 15 C 1.38237 * 119.98935 * 322.22032 * 14 12 11 16 16 C 1.38221 * 120.00891 * 179.77148 * 15 14 12 17 17 C 1.38322 * 119.98664 * 0.50496 * 16 15 14 18 18 Br 1.89104 * 120.00923 * 179.76721 * 17 16 15 19 19 C 1.38323 * 119.98271 * 359.75222 * 17 16 15 20 20 C 1.38223 * 119.98873 * 359.97438 * 19 17 16 21 21 C 1.53774 * 87.08392 * 25.43473 * 12 11 9 22 22 S 1.70962 * 110.10209 * 0.02562 * 7 6 5 23 23 H 0.96703 * 113.99607 * 300.00409 * 1 2 3 24 24 H 1.08994 * 109.47173 * 120.00301 * 2 1 3 25 25 H 1.48500 * 110.00514 * 300.00161 * 3 2 1 26 26 H 1.48504 * 110.00298 * 61.32266 * 3 2 1 27 27 H 1.08004 * 122.70982 * 0.22675 * 5 4 2 28 28 H 0.97003 * 120.00312 * 179.97438 * 8 7 6 29 29 H 1.09001 * 113.61346 * 203.66699 * 11 9 8 30 30 H 1.08996 * 113.61323 * 334.57104 * 11 9 8 31 31 H 1.07997 * 119.99594 * 0.02844 * 15 14 12 32 32 H 1.07997 * 120.00650 * 180.23638 * 16 15 14 33 33 H 1.08000 * 120.00642 * 179.97438 * 19 17 16 34 34 H 1.08002 * 119.99196 * 180.02562 * 20 19 17 35 35 H 1.09003 * 113.61585 * 220.02054 * 21 12 11 36 36 H 1.08997 * 113.69703 * 89.12313 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6878 -1.9802 -1.5554 6 7 2.2458 -2.3749 -2.6861 7 6 2.9495 -1.4965 -3.3302 8 7 3.6064 -1.7291 -4.5285 9 6 3.5333 -3.0491 -5.1597 10 1 3.3135 -3.8463 -4.4496 11 6 2.6500 -3.0820 -6.4182 12 6 3.9107 -2.7111 -7.2169 13 1 4.0683 -1.6366 -7.3097 14 6 4.0271 -3.4368 -8.5326 15 6 3.6345 -4.7587 -8.6296 16 6 3.7366 -5.4233 -9.8373 17 6 4.2415 -4.7686 -10.9462 18 35 4.3876 -5.6792 -12.5970 19 6 4.6392 -3.4475 -10.8473 20 6 4.5314 -2.7820 -9.6406 21 6 4.7238 -3.3574 -6.0830 22 16 2.9503 -0.0102 -2.4855 23 1 -0.3933 0.4418 0.7651 24 1 1.7924 -0.5138 0.8899 25 1 1.5615 2.4680 -1.2084 26 1 1.5880 2.4586 1.2243 27 1 1.0838 -2.6338 -0.9435 28 1 4.1139 -1.0177 -4.9495 29 1 2.2605 -4.0728 -6.6525 30 1 1.8811 -2.3096 -6.4324 31 1 3.2440 -5.2710 -7.7628 32 1 3.4263 -6.4549 -9.9139 33 1 5.0338 -2.9360 -11.7128 34 1 4.8415 -1.7503 -9.5634 35 1 5.6292 -2.8072 -5.8264 36 1 4.9021 -4.4233 -6.2243 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10390342_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:36:20 Heat of formation + Delta-G solvation = 85.891706 kcal Electronic energy + Delta-G solvation = -21049.740723 eV Core-core repulsion = 17674.722558 eV Total energy + Delta-G solvation = -3375.018165 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.998 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44024 -40.55908 -39.26329 -37.92034 -35.38451 -33.15999 -32.05137 -31.39611 -30.28991 -26.86198 -26.62188 -25.92109 -24.45347 -23.81839 -22.55236 -21.13447 -20.11413 -19.20630 -18.61108 -18.08503 -17.40721 -16.75103 -16.38296 -16.19041 -16.00705 -15.77111 -15.53298 -15.10039 -14.82396 -14.52093 -14.48169 -14.24666 -14.03268 -13.61780 -13.42913 -12.95076 -12.83863 -12.47172 -12.43554 -12.35350 -12.16421 -11.83808 -11.50181 -11.28920 -11.21975 -11.05830 -10.68691 -10.30123 -10.18259 -10.01788 -9.52011 -8.72016 -5.04756 -0.08461 0.02468 0.05763 0.31679 0.64911 0.65071 1.23856 1.53329 1.89052 1.96585 2.15916 2.56052 3.42282 3.44512 3.59787 3.69483 3.72061 3.83580 3.94679 3.96394 3.97509 4.21509 4.35608 4.42099 4.48382 4.62754 4.70862 4.73178 4.78851 4.81350 4.90658 5.02364 5.04383 5.08485 5.21299 5.23330 5.30100 5.59271 5.83193 5.89180 6.17251 6.59120 7.01558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.026 4.026 3 Si 0.718 3.282 4 C -0.272 4.272 5 C 0.101 3.899 6 N -0.575 5.575 7 C 0.317 3.683 8 N -0.667 5.667 9 C 0.135 3.865 10 H 0.093 0.907 11 C -0.144 4.144 12 C -0.068 4.068 13 H 0.112 0.888 14 C -0.056 4.056 15 C -0.114 4.114 16 C -0.099 4.099 17 C -0.110 4.110 18 Br -0.063 7.063 19 C -0.099 4.099 20 C -0.114 4.114 21 C -0.124 4.124 22 S 0.116 5.884 23 H 0.397 0.603 24 H 0.107 0.893 25 H -0.284 1.284 26 H -0.256 1.256 27 H 0.179 0.821 28 H 0.425 0.575 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.088 0.912 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 2.411 3.001 5.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.138 4.138 3 Si 0.621 3.379 4 C -0.394 4.394 5 C -0.049 4.049 6 N -0.301 5.301 7 C -0.053 4.053 8 N -0.307 5.307 9 C 0.027 3.973 10 H 0.111 0.889 11 C -0.183 4.183 12 C -0.087 4.087 13 H 0.130 0.870 14 C -0.056 4.056 15 C -0.133 4.133 16 C -0.118 4.118 17 C -0.190 4.190 18 Br 0.022 6.978 19 C -0.119 4.119 20 C -0.133 4.133 21 C -0.162 4.162 22 S 0.366 5.634 23 H 0.248 0.752 24 H 0.125 0.875 25 H -0.211 1.211 26 H -0.181 1.181 27 H 0.195 0.805 28 H 0.265 0.735 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.107 0.893 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.108 2.884 1.380 5.206 hybrid contribution -1.718 -0.374 0.861 1.958 sum 2.390 2.510 2.240 4.127 Atomic orbital electron populations 1.86570 1.18374 1.80478 1.51254 1.23932 0.83769 1.10293 0.95784 0.94504 0.90594 0.73546 0.79299 1.24615 1.12663 0.97993 1.04144 1.21438 0.97571 0.93856 0.92071 1.66457 1.17982 1.34697 1.10980 1.23892 0.95095 0.93663 0.92688 1.43729 1.53840 1.14384 1.18699 1.21863 0.97382 0.84387 0.93638 0.88916 1.23609 0.96524 1.03008 0.95176 1.21653 0.97181 1.00101 0.89734 0.86986 1.20019 0.96294 0.93948 0.95367 1.21250 0.99914 0.94537 0.97565 1.21304 0.98039 1.00739 0.91768 1.21980 1.07827 0.96635 0.92533 1.96753 1.97423 1.77080 1.26541 1.21323 0.98636 0.92532 0.99402 1.21350 0.99324 1.01123 0.91480 1.23405 0.97028 1.02853 0.92937 1.83792 1.50479 1.12432 1.16731 0.75190 0.87534 1.21098 1.18064 0.80452 0.73533 0.88299 0.91842 0.83497 0.84422 0.84381 0.83257 0.89311 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.12 12.85 -148.98 -1.91 -3.03 16 2 C -0.03 0.01 2.98 71.24 0.21 0.22 16 3 Si 0.72 -1.08 31.05 68.60 2.13 1.05 16 4 C -0.27 -0.94 5.78 24.57 0.14 -0.80 16 5 C 0.10 0.59 11.22 83.54 0.94 1.52 16 6 N -0.58 -4.08 9.83 -202.03 -1.99 -6.06 16 7 C 0.32 0.91 8.09 179.32 1.45 2.36 16 8 N -0.67 1.79 5.42 -327.89 -1.78 0.01 16 9 C 0.14 -0.45 4.44 45.52 0.20 -0.25 16 10 H 0.09 0.04 7.66 -2.39 -0.02 0.02 16 11 C -0.14 0.53 7.25 31.12 0.23 0.76 16 12 C -0.07 0.43 3.86 -11.01 -0.04 0.39 16 13 H 0.11 -0.95 8.09 -2.39 -0.02 -0.97 16 14 C -0.06 0.17 5.29 -19.86 -0.11 0.06 16 15 C -0.11 0.23 8.60 22.27 0.19 0.42 16 16 C -0.10 -0.07 9.79 22.29 0.22 0.15 16 17 C -0.11 -0.28 6.22 22.31 0.14 -0.14 16 18 Br -0.06 -0.23 33.70 -20.37 -0.69 -0.92 16 19 C -0.10 -0.05 9.79 22.29 0.22 0.17 16 20 C -0.11 0.26 9.71 22.27 0.22 0.48 16 21 C -0.12 0.87 7.29 31.12 0.23 1.09 16 22 S 0.12 0.11 20.57 -56.49 -1.16 -1.05 16 23 H 0.40 -2.61 8.74 -74.06 -0.65 -3.26 16 24 H 0.11 -0.54 7.96 -2.39 -0.02 -0.56 16 25 H -0.28 -1.69 7.11 99.48 0.71 -0.98 16 26 H -0.26 -0.22 7.11 99.48 0.71 0.49 16 27 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 28 H 0.42 -3.22 8.83 -92.71 -0.82 -4.04 16 29 H 0.10 -0.41 6.32 -2.39 -0.02 -0.43 16 30 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.15 -0.81 6.67 -2.91 -0.02 -0.83 16 32 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 33 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 34 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 35 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.10 -0.74 7.72 -2.39 -0.02 -0.76 16 Total: 0.00 -15.06 338.45 -1.46 -16.52 By element: Atomic # 1 Polarization: -12.66 SS G_CDS: -0.29 Total: -12.96 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.23 Total: 6.44 kcal Atomic # 7 Polarization: -2.29 SS G_CDS: -3.76 Total: -6.05 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -1.91 Total: -3.03 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: 2.13 Total: 1.05 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.16 Total: -1.05 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.92 kcal Total: -15.06 -1.46 -16.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10390342_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.412 kcal (2) G-P(sol) polarization free energy of solvation -15.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds