Wall clock time and date at job start Mon Mar 8 2021 04:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33324 * 125.95786 * 2 1 4 4 C 1.50710 * 122.70533 * 0.02562 * 3 2 1 5 5 O 1.42891 * 109.46903 * 329.99919 * 4 3 2 6 6 Si 1.86296 * 109.46803 * 210.00106 * 4 3 2 7 7 N 1.32116 * 114.58745 * 180.02562 * 3 2 1 8 8 C 1.29692 * 116.86182 * 359.97438 * 7 3 2 9 9 N 1.38614 * 124.94821 * 179.97438 * 8 7 3 10 10 C 1.46499 * 119.99895 * 180.02562 * 9 8 7 11 11 H 1.09004 * 112.91032 * 23.74899 * 10 9 8 12 12 C 1.53784 * 113.61434 * 154.99890 * 10 9 8 13 13 C 1.53787 * 87.07923 * 89.11404 * 12 10 9 14 14 H 1.09000 * 113.61529 * 270.88430 * 13 12 10 15 15 C 1.50702 * 113.60869 * 139.98154 * 13 12 10 16 16 C 1.38238 * 119.99160 * 299.71916 * 15 13 12 17 17 C 1.38217 * 120.00855 * 179.76814 * 16 15 13 18 18 C 1.38325 * 119.98981 * 0.51552 * 17 16 15 19 19 Br 1.89099 * 120.01023 * 179.76330 * 18 17 16 20 20 C 1.38323 * 119.97986 * 359.74139 * 18 17 16 21 21 C 1.38213 * 119.98952 * 0.02562 * 20 18 17 22 22 C 1.53779 * 113.61357 * 252.49491 * 10 9 8 23 23 S 1.70964 * 110.10112 * 0.24355 * 8 7 3 24 24 H 1.08997 * 109.47131 * 90.00124 * 1 2 3 25 25 H 1.09004 * 109.47233 * 210.00078 * 1 2 3 26 26 H 1.09004 * 109.47058 * 329.99677 * 1 2 3 27 27 H 1.08998 * 109.47014 * 90.00384 * 4 3 2 28 28 H 0.96695 * 113.99882 * 180.02562 * 5 4 3 29 29 H 1.48501 * 110.00395 * 298.67884 * 6 4 3 30 30 H 1.48501 * 110.00347 * 59.99915 * 6 4 3 31 31 H 0.97000 * 119.99831 * 0.02562 * 9 8 7 32 32 H 1.09004 * 113.61451 * 334.56890 * 12 10 9 33 33 H 1.08994 * 113.61477 * 203.66192 * 12 10 9 34 34 H 1.08003 * 119.99301 * 0.03200 * 16 15 13 35 35 H 1.08006 * 120.00724 * 180.27939 * 17 16 15 36 36 H 1.08003 * 120.00515 * 180.02562 * 20 18 17 37 37 H 1.08008 * 119.99616 * 180.02562 * 21 20 18 38 38 H 1.09006 * 113.61307 * 156.33848 * 22 10 9 39 39 H 1.09007 * 113.61642 * 25.43606 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4812 2.5023 -0.6726 6 14 2.9321 3.6150 -0.8778 7 7 3.5850 0.8187 -0.0005 8 6 3.9314 -0.4311 -0.0005 9 7 5.2384 -0.8928 -0.0015 10 6 5.5064 -2.3331 -0.0019 11 1 4.6803 -2.9183 -0.4057 12 6 6.8742 -2.7050 -0.5984 13 6 7.4481 -2.5445 0.8193 14 1 7.7795 -1.5307 1.0440 15 6 8.4730 -3.5896 1.1774 16 6 8.1240 -4.9272 1.1803 17 6 9.0650 -5.8865 1.5041 18 6 10.3533 -5.5071 1.8355 19 35 11.6394 -6.8185 2.2850 20 6 10.7006 -4.1682 1.8376 21 6 9.7603 -3.2100 1.5091 22 6 6.0368 -2.8613 1.3415 23 16 2.5412 -1.4261 -0.0065 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6097 2.8212 1.0284 28 1 0.0690 3.3762 -0.7107 29 1 4.2370 3.6284 -0.1692 30 1 3.1204 3.1647 -2.2803 31 1 5.9755 -0.2623 -0.0019 32 1 7.2547 -1.9712 -1.3091 33 1 6.9227 -3.7262 -0.9761 34 1 7.1171 -5.2230 0.9255 35 1 8.7935 -6.9318 1.5020 36 1 11.7065 -3.8715 2.0959 37 1 10.0315 -2.1645 1.5103 38 1 5.8564 -3.9254 1.4941 39 1 5.7412 -2.2538 2.1969 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10390342_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:36:23 Heat of formation + Delta-G solvation = 80.284090 kcal Electronic energy + Delta-G solvation = -23121.837848 eV Core-core repulsion = 19591.038900 eV Total energy + Delta-G solvation = -3530.798948 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.014 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.54877 -40.98820 -39.46728 -37.67355 -35.58699 -33.38233 -32.47240 -32.07409 -30.43027 -29.21558 -26.82814 -26.11125 -25.56223 -24.43616 -23.86998 -22.65121 -20.78353 -20.21713 -19.14816 -18.34670 -17.91293 -17.35455 -16.82244 -16.48910 -16.29688 -16.19249 -15.73135 -15.55340 -15.14290 -14.80701 -14.60525 -14.38000 -14.30013 -14.09717 -13.95512 -13.61107 -13.52908 -13.41427 -12.98259 -12.91474 -12.49582 -12.35490 -12.24077 -11.91561 -11.86795 -11.51705 -11.34348 -11.30595 -11.11544 -10.79822 -10.37563 -10.08634 -10.05549 -9.56689 -8.72808 -4.96673 -0.12376 0.00619 0.03084 0.27544 0.61793 0.63765 1.26910 1.66066 1.75073 1.77620 2.19917 2.51146 3.10088 3.29077 3.49644 3.56089 3.74589 3.84965 3.90710 3.95516 4.07943 4.09709 4.27500 4.30544 4.33056 4.38277 4.42477 4.64248 4.68762 4.69597 4.80929 4.82951 4.85502 4.93073 4.98425 5.01127 5.11511 5.19089 5.19943 5.32098 5.50831 5.62410 5.78638 6.15756 6.75351 6.94558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.243 4.243 3 C 0.072 3.928 4 C -0.035 4.035 5 O -0.552 6.552 6 Si 0.810 3.190 7 N -0.585 5.585 8 C 0.308 3.692 9 N -0.673 5.673 10 C 0.121 3.879 11 H 0.103 0.897 12 C -0.123 4.123 13 C -0.071 4.071 14 H 0.103 0.897 15 C -0.056 4.056 16 C -0.111 4.111 17 C -0.097 4.097 18 C -0.110 4.110 19 Br -0.062 7.062 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.141 4.141 23 S 0.130 5.870 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.408 0.592 29 H -0.303 1.303 30 H -0.323 1.323 31 H 0.413 0.587 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 1.381 0.396 3.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.366 4.366 3 C -0.057 4.057 4 C -0.147 4.147 5 O -0.362 6.362 6 Si 0.719 3.281 7 N -0.314 5.314 8 C -0.063 4.063 9 N -0.312 5.312 10 C 0.015 3.985 11 H 0.121 0.879 12 C -0.161 4.161 13 C -0.089 4.089 14 H 0.121 0.879 15 C -0.056 4.056 16 C -0.130 4.130 17 C -0.116 4.116 18 C -0.189 4.189 19 Br 0.023 6.977 20 C -0.119 4.119 21 C -0.136 4.136 22 C -0.180 4.180 23 S 0.379 5.621 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.260 0.740 29 H -0.232 1.232 30 H -0.253 1.253 31 H 0.252 0.748 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.133 0.867 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.802 -0.544 0.086 1.884 hybrid contribution 0.364 0.725 0.163 0.827 sum -1.437 0.181 0.248 1.470 Atomic orbital electron populations 1.20126 0.84949 1.03261 1.02872 1.25553 1.02665 0.92832 1.15570 1.19443 0.86446 0.96742 1.03034 1.23963 0.93586 0.94568 1.02616 1.86419 1.32918 1.37922 1.78916 0.95351 0.76207 0.82738 0.73849 1.65760 1.18124 1.18146 1.29327 1.23505 0.92975 0.91348 0.98459 1.43755 1.00975 1.07157 1.79351 1.22126 0.99262 0.78637 0.98481 0.87946 1.23418 0.92601 1.04218 0.95884 1.21602 0.92626 0.97791 0.96885 0.87913 1.19957 0.94290 0.94463 0.96937 1.21272 1.00360 0.91747 0.99592 1.21338 0.91208 1.01277 0.97813 1.21994 0.94947 0.93720 1.08245 1.96760 1.55128 1.53297 1.92481 1.21297 1.00876 0.91012 0.98731 1.21320 0.92766 1.00239 0.99245 1.23681 0.94197 1.03235 0.96917 1.83697 0.95285 1.09457 1.73669 0.91114 0.91528 0.88747 0.88166 0.74006 1.23160 1.25300 0.74833 0.90097 0.86595 0.82813 0.84068 0.84543 0.83868 0.86719 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.11 8.96 71.23 0.64 0.53 16 2 C -0.24 -1.65 6.50 24.57 0.16 -1.49 16 3 C 0.07 0.65 5.95 41.41 0.25 0.89 16 4 C -0.04 -0.08 2.82 71.24 0.20 0.12 16 5 O -0.55 0.74 9.86 -148.98 -1.47 -0.73 16 6 Si 0.81 2.62 32.08 68.60 2.20 4.82 16 7 N -0.58 -6.57 8.95 -189.85 -1.70 -8.27 16 8 C 0.31 2.04 8.24 179.32 1.48 3.51 16 9 N -0.67 -0.53 5.42 -327.89 -1.78 -2.30 16 10 C 0.12 -0.55 4.31 45.52 0.20 -0.35 16 11 H 0.10 -0.52 7.06 -2.39 -0.02 -0.54 16 12 C -0.12 0.84 7.29 31.12 0.23 1.07 16 13 C -0.07 0.41 3.86 -11.01 -0.04 0.37 16 14 H 0.10 -0.60 8.10 -2.39 -0.02 -0.62 16 15 C -0.06 0.18 5.29 -19.86 -0.11 0.08 16 16 C -0.11 0.40 8.62 22.26 0.19 0.59 16 17 C -0.10 0.05 9.79 22.29 0.22 0.27 16 18 C -0.11 -0.23 6.22 22.31 0.14 -0.09 16 19 Br -0.06 -0.20 33.70 -20.37 -0.69 -0.89 16 20 C -0.10 -0.08 9.79 22.28 0.22 0.14 16 21 C -0.12 0.18 9.71 22.27 0.22 0.40 16 22 C -0.14 0.83 7.25 31.12 0.23 1.05 16 23 S 0.13 0.50 21.69 -56.49 -1.22 -0.73 16 24 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 26 H 0.09 0.08 6.61 -2.38 -0.02 0.06 16 27 H 0.10 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H 0.41 -5.01 8.74 -74.06 -0.65 -5.66 16 29 H -0.30 -3.45 7.11 99.48 0.71 -2.74 16 30 H -0.32 -4.24 7.11 99.48 0.71 -3.54 16 31 H 0.41 0.01 8.83 -92.71 -0.82 -0.81 16 32 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.12 -1.01 7.73 -2.39 -0.02 -1.03 16 34 H 0.15 -1.31 6.64 -2.91 -0.02 -1.33 16 35 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 36 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 37 H 0.14 -0.69 8.06 -2.91 -0.02 -0.71 16 38 H 0.11 -0.98 6.30 -2.38 -0.02 -0.99 16 39 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 Total: 0.00 -19.47 355.21 -0.77 -20.25 By element: Atomic # 1 Polarization: -18.92 SS G_CDS: -0.32 Total: -19.24 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 4.21 Total: 7.09 kcal Atomic # 7 Polarization: -7.10 SS G_CDS: -3.48 Total: -10.57 kcal Atomic # 8 Polarization: 0.74 SS G_CDS: -1.47 Total: -0.73 kcal Atomic # 14 Polarization: 2.62 SS G_CDS: 2.20 Total: 4.82 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -1.22 Total: -0.73 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.69 Total: -0.89 kcal Total: -19.47 -0.77 -20.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10390342_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.529 kcal (2) G-P(sol) polarization free energy of solvation -19.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds