Wall clock time and date at job start Mon Mar 8 2021 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.46782 * 2 1 4 4 C 1.50704 * 109.46939 * 119.99481 * 2 1 3 5 5 C 1.37985 * 120.32643 * 245.00442 * 4 2 1 6 6 N 1.32002 * 120.89974 * 179.74974 * 5 4 2 7 7 C 1.32335 * 121.64741 * 359.97374 * 6 5 4 8 8 N 1.39143 * 119.72070 * 180.02562 * 7 6 5 9 9 C 1.46506 * 120.00012 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84638 * 336.19477 * 9 8 7 11 11 C 1.53776 * 113.61539 * 107.50069 * 9 8 7 12 12 C 1.53773 * 87.08095 * 89.11994 * 11 9 8 13 13 H 1.08999 * 113.69073 * 270.87370 * 12 11 9 14 14 C 1.50704 * 113.61673 * 139.98099 * 12 11 9 15 15 C 1.38241 * 119.98669 * 322.23176 * 14 12 11 16 16 C 1.38224 * 120.00426 * 179.72676 * 15 14 12 17 17 C 1.38323 * 119.99049 * 0.54244 * 16 15 14 18 18 Br 1.89099 * 120.00661 * 179.70720 * 17 16 15 19 19 C 1.38321 * 119.98376 * 359.72564 * 17 16 15 20 20 C 1.38220 * 119.98694 * 0.02562 * 19 17 16 21 21 C 1.53779 * 113.61741 * 205.00300 * 9 8 7 22 22 C 1.39347 * 120.56578 * 0.02562 * 7 6 5 23 23 F 1.35098 * 120.47112 * 179.97438 * 22 7 6 24 24 C 1.38446 * 119.05175 * 0.02562 * 22 7 6 25 25 H 0.96691 * 114.00164 * 300.00101 * 1 2 3 26 26 H 1.08996 * 109.47163 * 239.99855 * 2 1 3 27 27 H 1.48499 * 109.99858 * 299.99924 * 3 2 1 28 28 H 1.48497 * 110.00113 * 61.31387 * 3 2 1 29 29 H 1.07999 * 119.54641 * 359.72428 * 5 4 2 30 30 H 0.97004 * 120.00639 * 180.02562 * 8 7 6 31 31 H 1.09005 * 113.61225 * 203.66671 * 11 9 8 32 32 H 1.08997 * 113.61403 * 334.56712 * 11 9 8 33 33 H 1.07993 * 119.99809 * 359.97209 * 15 14 12 34 34 H 1.07999 * 120.00146 * 180.29165 * 16 15 14 35 35 H 1.07998 * 120.00913 * 180.02562 * 19 17 16 36 36 H 1.08003 * 119.99645 * 180.02562 * 20 19 17 37 37 H 1.08996 * 113.61201 * 25.42449 * 21 9 8 38 38 H 1.09000 * 113.61846 * 156.24811 * 21 9 8 39 39 H 1.07998 * 120.75127 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6381 -0.0199 2.1939 6 7 3.0790 -0.6297 3.2784 7 6 2.8634 -1.9187 3.4865 8 7 3.3461 -2.5208 4.6443 9 6 4.0891 -1.7280 5.6271 10 1 4.5513 -0.8413 5.1933 11 6 3.2981 -1.4450 6.9151 12 6 3.8727 -2.7616 7.4637 13 1 3.2616 -3.6349 7.2356 14 6 4.2698 -2.6884 8.9157 15 6 4.8490 -1.5374 9.4164 16 6 5.2081 -1.4678 10.7494 17 6 4.9983 -2.5541 11.5796 18 35 5.4971 -2.4624 13.4013 19 6 4.4238 -3.7076 11.0768 20 6 4.0602 -3.7745 9.7450 21 6 5.0484 -2.5617 6.4928 22 6 2.1570 -2.6782 2.5560 23 9 1.9384 -3.9941 2.7701 24 6 1.6834 -2.0654 1.4084 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 1.5614 2.4678 -1.2085 28 1 1.5877 2.4586 1.2241 29 1 2.8334 1.0336 2.0584 30 1 3.1907 -3.4654 4.8009 31 1 3.6413 -0.5612 7.4529 32 1 2.2171 -1.4644 6.7768 33 1 5.0172 -0.6911 8.7670 34 1 5.6563 -0.5669 11.1416 35 1 4.2594 -4.5558 11.7248 36 1 3.6113 -4.6749 9.3524 37 1 5.3802 -3.4827 6.0136 38 1 5.8708 -1.9836 6.9140 39 1 1.1323 -2.6278 0.6693 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10390342_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:36:27 Heat of formation + Delta-G solvation = 26.004823 kcal Electronic energy + Delta-G solvation = -24972.355770 eV Core-core repulsion = 21036.134493 eV Total energy + Delta-G solvation = -3936.221277 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.032 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -49.90474 -41.72285 -41.10225 -39.41987 -38.05874 -35.61921 -33.41676 -33.09549 -32.12814 -31.34233 -30.18153 -26.91167 -26.74278 -26.00880 -24.76788 -23.89775 -23.02753 -22.39572 -20.32651 -19.54660 -18.65129 -18.27314 -17.90886 -17.59988 -16.99629 -16.79493 -16.36885 -16.18517 -16.10873 -15.93561 -15.51636 -15.40501 -14.92734 -14.71774 -14.51778 -14.39633 -14.37018 -14.01848 -13.66455 -13.58075 -13.46424 -12.91801 -12.71667 -12.50882 -12.27909 -12.06455 -11.95676 -11.55092 -11.35700 -11.23161 -11.20122 -10.79367 -10.67233 -10.56830 -10.08133 -9.55378 -8.82794 -5.03498 -0.10635 0.00492 0.08365 0.25150 0.66486 1.19021 1.51140 1.85417 1.90106 2.48516 2.51395 3.00020 3.17254 3.30957 3.35920 3.51556 3.53682 3.57536 3.71811 3.79988 3.82708 3.85429 3.93836 4.04871 4.25046 4.33029 4.39596 4.42837 4.52327 4.58335 4.64031 4.66492 4.71522 4.82138 4.88231 4.93299 4.95072 5.01340 5.16752 5.17517 5.38204 5.49617 5.74210 5.92016 6.11728 6.32730 6.90736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.062 4.062 3 Si 0.684 3.316 4 C -0.207 4.207 5 C 0.147 3.853 6 N -0.510 5.510 7 C 0.393 3.607 8 N -0.700 5.700 9 C 0.134 3.866 10 H 0.111 0.889 11 C -0.145 4.145 12 C -0.078 4.078 13 H 0.098 0.902 14 C -0.055 4.055 15 C -0.111 4.111 16 C -0.087 4.087 17 C -0.095 4.095 18 Br -0.051 7.051 19 C -0.088 4.088 20 C -0.111 4.111 21 C -0.137 4.137 22 C -0.020 4.020 23 F -0.133 7.133 24 C -0.037 4.037 25 H 0.376 0.624 26 H 0.120 0.880 27 H -0.254 1.254 28 H -0.256 1.256 29 H 0.164 0.836 30 H 0.412 0.588 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 0.839 -1.446 2.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.173 4.173 3 Si 0.585 3.415 4 C -0.212 4.212 5 C -0.011 4.011 6 N -0.227 5.227 7 C 0.155 3.845 8 N -0.332 5.332 9 C 0.028 3.972 10 H 0.129 0.871 11 C -0.184 4.184 12 C -0.096 4.096 13 H 0.117 0.883 14 C -0.055 4.055 15 C -0.130 4.130 16 C -0.107 4.107 17 C -0.174 4.174 18 Br 0.035 6.965 19 C -0.108 4.108 20 C -0.130 4.130 21 C -0.175 4.175 22 C -0.046 4.046 23 F -0.112 7.112 24 C -0.063 4.063 25 H 0.224 0.776 26 H 0.138 0.862 27 H -0.178 1.178 28 H -0.181 1.181 29 H 0.181 0.819 30 H 0.250 0.750 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.654 1.932 -0.547 3.328 hybrid contribution -1.811 -1.452 -0.223 2.332 sum 0.842 0.480 -0.771 1.238 Atomic orbital electron populations 1.86618 1.17690 1.79937 1.49355 1.24835 0.83904 1.10851 0.97672 0.95072 0.91517 0.74243 0.80711 1.20869 1.05720 0.94536 1.00072 1.22410 0.91621 0.99552 0.87477 1.67301 1.24933 1.07251 1.23182 1.18397 0.90390 0.89012 0.86729 1.44236 1.59016 1.11847 1.18091 1.21820 0.92365 0.95372 0.87683 0.87078 1.23611 1.01142 0.97149 0.96484 1.21657 0.98174 0.99572 0.90182 0.88341 1.19844 0.96823 0.93643 0.95199 1.21034 0.99019 0.98140 0.94814 1.21143 0.98720 0.97504 0.93346 1.21855 1.06011 0.97873 0.91697 1.96780 1.91224 1.98884 1.09641 1.21149 0.97034 0.96664 0.95909 1.21098 1.00291 0.98701 0.92888 1.23463 0.96776 1.01228 0.96066 1.18000 1.08623 0.79619 0.98377 1.91494 1.93573 1.31304 1.94865 1.21295 0.95514 0.94460 0.95067 0.77587 0.86202 1.17841 1.18085 0.81947 0.75017 0.88538 0.90739 0.84910 0.84875 0.84935 0.85163 0.90415 0.88131 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.08 12.84 -35.23 -0.45 -0.53 16 2 C -0.06 0.09 2.82 36.01 0.10 0.19 16 3 Si 0.68 -1.55 29.90 -169.99 -5.08 -6.63 16 4 C -0.21 0.16 5.36 -104.47 -0.56 -0.40 16 5 C 0.15 -0.09 9.84 -17.57 -0.17 -0.26 16 6 N -0.51 -0.46 9.13 -12.37 -0.11 -0.57 16 7 C 0.39 0.33 7.49 -154.86 -1.16 -0.83 16 8 N -0.70 0.59 5.42 -53.06 -0.29 0.30 16 9 C 0.13 -0.24 4.35 -67.12 -0.29 -0.53 16 10 H 0.11 -0.11 7.41 -51.93 -0.38 -0.50 16 11 C -0.15 0.28 7.25 -25.93 -0.19 0.09 16 12 C -0.08 0.18 3.86 -90.96 -0.35 -0.17 16 13 H 0.10 -0.26 8.09 -51.93 -0.42 -0.68 16 14 C -0.05 0.05 5.29 -104.62 -0.55 -0.50 16 15 C -0.11 0.10 8.60 -39.59 -0.34 -0.24 16 16 C -0.09 -0.01 9.79 -39.56 -0.39 -0.40 16 17 C -0.09 -0.10 6.22 -39.52 -0.25 -0.34 16 18 Br -0.05 -0.07 33.70 -68.01 -2.29 -2.36 16 19 C -0.09 -0.03 9.79 -39.56 -0.39 -0.42 16 20 C -0.11 0.06 9.71 -39.59 -0.38 -0.33 16 21 C -0.14 0.37 7.29 -25.92 -0.19 0.18 16 22 C -0.02 -0.02 7.35 -39.09 -0.29 -0.31 16 23 F -0.13 -0.22 16.65 2.25 0.04 -0.18 16 24 C -0.04 0.00 9.82 -39.26 -0.39 -0.39 16 25 H 0.38 -0.97 8.70 45.56 0.40 -0.58 16 26 H 0.12 -0.27 7.96 -51.93 -0.41 -0.69 16 27 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 28 H -0.26 0.14 7.02 56.52 0.40 0.54 16 29 H 0.16 -0.43 4.84 -52.49 -0.25 -0.69 16 30 H 0.41 -0.73 8.17 -40.82 -0.33 -1.07 16 31 H 0.10 -0.24 6.32 -51.93 -0.33 -0.57 16 32 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.13 -0.36 6.67 -52.49 -0.35 -0.71 16 34 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.13 -0.09 8.06 -52.49 -0.42 -0.52 16 36 H 0.13 -0.28 8.05 -52.48 -0.42 -0.71 16 37 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.10 -0.30 7.72 -51.93 -0.40 -0.70 16 39 H 0.15 -0.11 8.06 -52.49 -0.42 -0.53 16 LS Contribution 350.98 15.07 5.29 5.29 Total: 0.00 -5.39 350.98 -12.91 -18.30 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -4.23 Total: -8.97 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -5.78 Total: -4.64 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -0.40 Total: -0.27 kcal Atomic # 8 Polarization: -0.08 SS G_CDS: -0.45 Total: -0.53 kcal Atomic # 9 Polarization: -0.22 SS G_CDS: 0.04 Total: -0.18 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: -5.08 Total: -6.63 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.29 Total: -2.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -5.39 -12.91 -18.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10390342_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.303 kcal (2) G-P(sol) polarization free energy of solvation -5.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds