Wall clock time and date at job start Mon Mar 8 2021 04:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.46782 * 2 1 4 4 C 1.50704 * 109.46939 * 119.99481 * 2 1 3 5 5 C 1.37985 * 120.32643 * 245.00442 * 4 2 1 6 6 N 1.32002 * 120.89974 * 179.74974 * 5 4 2 7 7 C 1.32335 * 121.64741 * 359.97374 * 6 5 4 8 8 N 1.39143 * 119.72070 * 180.02562 * 7 6 5 9 9 C 1.46506 * 120.00012 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84638 * 336.19477 * 9 8 7 11 11 C 1.53776 * 113.61539 * 107.50069 * 9 8 7 12 12 C 1.53773 * 87.08095 * 89.11994 * 11 9 8 13 13 H 1.08999 * 113.69073 * 270.87370 * 12 11 9 14 14 C 1.50704 * 113.61673 * 139.98099 * 12 11 9 15 15 C 1.38241 * 119.98669 * 322.23176 * 14 12 11 16 16 C 1.38224 * 120.00426 * 179.72676 * 15 14 12 17 17 C 1.38323 * 119.99049 * 0.54244 * 16 15 14 18 18 Br 1.89099 * 120.00661 * 179.70720 * 17 16 15 19 19 C 1.38321 * 119.98376 * 359.72564 * 17 16 15 20 20 C 1.38220 * 119.98694 * 0.02562 * 19 17 16 21 21 C 1.53779 * 113.61741 * 205.00300 * 9 8 7 22 22 C 1.39347 * 120.56578 * 0.02562 * 7 6 5 23 23 F 1.35098 * 120.47112 * 179.97438 * 22 7 6 24 24 C 1.38446 * 119.05175 * 0.02562 * 22 7 6 25 25 H 0.96691 * 114.00164 * 300.00101 * 1 2 3 26 26 H 1.08996 * 109.47163 * 239.99855 * 2 1 3 27 27 H 1.48499 * 109.99858 * 299.99924 * 3 2 1 28 28 H 1.48497 * 110.00113 * 61.31387 * 3 2 1 29 29 H 1.07999 * 119.54641 * 359.72428 * 5 4 2 30 30 H 0.97004 * 120.00639 * 180.02562 * 8 7 6 31 31 H 1.09005 * 113.61225 * 203.66671 * 11 9 8 32 32 H 1.08997 * 113.61403 * 334.56712 * 11 9 8 33 33 H 1.07993 * 119.99809 * 359.97209 * 15 14 12 34 34 H 1.07999 * 120.00146 * 180.29165 * 16 15 14 35 35 H 1.07998 * 120.00913 * 180.02562 * 19 17 16 36 36 H 1.08003 * 119.99645 * 180.02562 * 20 19 17 37 37 H 1.08996 * 113.61201 * 25.42449 * 21 9 8 38 38 H 1.09000 * 113.61846 * 156.24811 * 21 9 8 39 39 H 1.07998 * 120.75127 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6381 -0.0199 2.1939 6 7 3.0790 -0.6297 3.2784 7 6 2.8634 -1.9187 3.4865 8 7 3.3461 -2.5208 4.6443 9 6 4.0891 -1.7280 5.6271 10 1 4.5513 -0.8413 5.1933 11 6 3.2981 -1.4450 6.9151 12 6 3.8727 -2.7616 7.4637 13 1 3.2616 -3.6349 7.2356 14 6 4.2698 -2.6884 8.9157 15 6 4.8490 -1.5374 9.4164 16 6 5.2081 -1.4678 10.7494 17 6 4.9983 -2.5541 11.5796 18 35 5.4971 -2.4624 13.4013 19 6 4.4238 -3.7076 11.0768 20 6 4.0602 -3.7745 9.7450 21 6 5.0484 -2.5617 6.4928 22 6 2.1570 -2.6782 2.5560 23 9 1.9384 -3.9941 2.7701 24 6 1.6834 -2.0654 1.4084 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 1.5614 2.4678 -1.2085 28 1 1.5877 2.4586 1.2241 29 1 2.8334 1.0336 2.0584 30 1 3.1907 -3.4654 4.8009 31 1 3.6413 -0.5612 7.4529 32 1 2.2171 -1.4644 6.7768 33 1 5.0172 -0.6911 8.7670 34 1 5.6563 -0.5669 11.1416 35 1 4.2594 -4.5558 11.7248 36 1 3.6113 -4.6749 9.3524 37 1 5.3802 -3.4827 6.0136 38 1 5.8708 -1.9836 6.9140 39 1 1.1323 -2.6278 0.6693 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10390342_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:36:26 Heat of formation + Delta-G solvation = 33.438246 kcal Electronic energy + Delta-G solvation = -24972.033432 eV Core-core repulsion = 21036.134493 eV Total energy + Delta-G solvation = -3935.898939 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.032 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.95782 -41.64503 -41.02711 -39.33387 -38.00280 -35.55195 -33.39013 -33.07305 -32.06121 -31.30768 -30.15010 -26.78486 -26.61851 -25.92253 -24.71841 -23.83313 -22.98674 -22.32056 -20.20808 -19.48687 -18.60179 -18.25271 -17.83304 -17.57267 -17.01586 -16.69500 -16.28792 -16.10651 -16.03969 -15.86928 -15.50064 -15.33060 -14.86373 -14.63942 -14.46828 -14.34238 -14.29033 -14.01780 -13.54987 -13.45449 -13.41146 -12.84786 -12.65316 -12.41680 -12.20620 -12.05680 -11.83489 -11.52369 -11.29164 -11.22127 -11.10529 -10.74180 -10.64370 -10.53037 -10.02570 -9.52560 -8.77423 -4.87661 -0.08394 0.04308 0.10666 0.30893 0.64379 1.32743 1.63531 1.94239 2.00883 2.52540 2.55973 3.02283 3.25586 3.43726 3.50125 3.60895 3.65664 3.72917 3.83179 3.85864 3.94057 3.97453 4.00219 4.19502 4.34886 4.40471 4.45468 4.53270 4.67498 4.70517 4.74096 4.79420 4.86309 4.93242 4.99663 5.03457 5.06580 5.15091 5.22571 5.24834 5.45242 5.59063 5.82385 6.01191 6.19008 6.50955 6.95581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.068 4.068 3 Si 0.766 3.234 4 C -0.202 4.202 5 C 0.146 3.854 6 N -0.523 5.523 7 C 0.385 3.615 8 N -0.697 5.697 9 C 0.133 3.867 10 H 0.106 0.894 11 C -0.141 4.141 12 C -0.072 4.072 13 H 0.103 0.897 14 C -0.056 4.056 15 C -0.112 4.112 16 C -0.097 4.097 17 C -0.111 4.111 18 Br -0.063 7.063 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.038 4.038 23 F -0.141 7.141 24 C -0.040 4.040 25 H 0.386 0.614 26 H 0.129 0.871 27 H -0.302 1.302 28 H -0.275 1.275 29 H 0.182 0.818 30 H 0.416 0.584 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 1.121 -1.905 3.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.178 4.178 3 Si 0.671 3.329 4 C -0.208 4.208 5 C -0.011 4.011 6 N -0.240 5.240 7 C 0.147 3.853 8 N -0.329 5.329 9 C 0.028 3.972 10 H 0.124 0.876 11 C -0.180 4.180 12 C -0.090 4.090 13 H 0.121 0.879 14 C -0.056 4.056 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.190 4.190 18 Br 0.023 6.977 19 C -0.119 4.119 20 C -0.136 4.136 21 C -0.166 4.166 22 C -0.064 4.064 23 F -0.120 7.120 24 C -0.067 4.067 25 H 0.236 0.764 26 H 0.146 0.854 27 H -0.230 1.230 28 H -0.201 1.201 29 H 0.199 0.801 30 H 0.254 0.746 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.015 2.186 -0.982 3.851 hybrid contribution -1.965 -1.507 -0.137 2.480 sum 1.050 0.679 -1.119 1.678 Atomic orbital electron populations 1.86589 1.18580 1.80366 1.50205 1.25048 0.83288 1.11719 0.97732 0.94128 0.90146 0.71723 0.76908 1.20895 1.05494 0.94154 1.00229 1.22742 0.90998 1.00340 0.86992 1.67350 1.25537 1.07304 1.23852 1.18537 0.90480 0.89152 0.87158 1.44301 1.58729 1.12090 1.17803 1.21832 0.92564 0.95338 0.87487 0.87633 1.23590 1.00310 0.97644 0.96460 1.21638 0.98394 0.99584 0.89411 0.87892 1.20024 0.96361 0.93494 0.95746 1.21263 0.98420 0.98752 0.94621 1.21326 0.98965 0.97594 0.93817 1.21979 1.07014 0.98645 0.91342 1.96753 1.91372 1.98915 1.10686 1.21301 0.97329 0.96748 0.96533 1.21331 1.00136 0.99508 0.92614 1.23419 0.96576 1.01192 0.95401 1.18141 1.09674 0.79489 0.99089 1.91467 1.93744 1.31810 1.94977 1.21448 0.95331 0.94966 0.94919 0.76431 0.85355 1.23021 1.20101 0.80112 0.74631 0.87812 0.91980 0.83101 0.84183 0.84504 0.83715 0.90195 0.87456 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.06 12.84 -148.98 -1.91 -1.97 16 2 C -0.07 0.24 2.82 71.24 0.20 0.44 16 3 Si 0.77 -3.83 29.90 68.60 2.05 -1.78 16 4 C -0.20 0.40 5.36 -19.76 -0.11 0.30 16 5 C 0.15 -0.27 9.84 84.61 0.83 0.56 16 6 N -0.52 -0.78 9.13 -193.04 -1.76 -2.54 16 7 C 0.39 0.68 7.49 133.09 1.00 1.67 16 8 N -0.70 1.21 5.42 -321.78 -1.74 -0.53 16 9 C 0.13 -0.54 4.35 45.51 0.20 -0.34 16 10 H 0.11 -0.27 7.41 -2.39 -0.02 -0.28 16 11 C -0.14 0.63 7.25 31.12 0.23 0.86 16 12 C -0.07 0.39 3.86 -11.01 -0.04 0.35 16 13 H 0.10 -0.63 8.09 -2.39 -0.02 -0.64 16 14 C -0.06 0.14 5.29 -19.86 -0.11 0.04 16 15 C -0.11 0.28 8.60 22.27 0.19 0.48 16 16 C -0.10 -0.02 9.79 22.29 0.22 0.20 16 17 C -0.11 -0.27 6.22 22.31 0.14 -0.13 16 18 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.91 16 19 C -0.10 -0.10 9.79 22.29 0.22 0.12 16 20 C -0.12 0.16 9.71 22.27 0.22 0.38 16 21 C -0.13 0.82 7.29 31.12 0.23 1.04 16 22 C -0.04 -0.09 7.35 22.59 0.17 0.07 16 23 F -0.14 -0.55 16.65 44.97 0.75 0.19 16 24 C -0.04 -0.01 9.82 22.48 0.22 0.21 16 25 H 0.39 -2.06 8.70 -74.06 -0.64 -2.70 16 26 H 0.13 -0.68 7.96 -2.39 -0.02 -0.70 16 27 H -0.30 -0.99 7.11 99.48 0.71 -0.29 16 28 H -0.27 0.52 7.02 99.48 0.70 1.22 16 29 H 0.18 -1.18 4.84 -2.91 -0.01 -1.19 16 30 H 0.42 -1.46 8.17 -92.71 -0.76 -2.22 16 31 H 0.10 -0.62 6.32 -2.38 -0.02 -0.63 16 32 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.15 -1.02 6.67 -2.91 -0.02 -1.04 16 34 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 35 H 0.14 -0.11 8.06 -2.91 -0.02 -0.14 16 36 H 0.15 -0.72 8.05 -2.91 -0.02 -0.75 16 37 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.11 -0.79 7.72 -2.39 -0.02 -0.81 16 39 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 Total: 0.00 -12.86 350.98 0.24 -12.62 By element: Atomic # 1 Polarization: -11.06 SS G_CDS: -0.25 Total: -11.32 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 3.80 Total: 6.24 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -3.50 Total: -3.08 kcal Atomic # 8 Polarization: -0.06 SS G_CDS: -1.91 Total: -1.97 kcal Atomic # 9 Polarization: -0.55 SS G_CDS: 0.75 Total: 0.19 kcal Atomic # 14 Polarization: -3.83 SS G_CDS: 2.05 Total: -1.78 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.91 kcal Total: -12.86 0.24 -12.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10390342_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.057 kcal (2) G-P(sol) polarization free energy of solvation -12.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds