Wall clock time and date at job start Mon Mar 8 2021 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47213 * 2 1 4 4 H 1.09004 * 109.46916 * 54.99740 * 3 2 1 5 5 C 1.53000 * 109.47258 * 174.99825 * 3 2 1 6 6 C 1.53006 * 109.47260 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.47061 * 300.00424 * 6 5 3 8 8 H 1.08999 * 109.47163 * 299.99857 * 7 6 5 9 9 N 1.46506 * 109.47100 * 179.97438 * 7 6 5 10 10 C 1.38600 * 120.00034 * 154.72153 * 9 7 6 11 11 N 1.29694 * 124.95083 * 359.69735 * 10 9 7 12 12 C 1.32125 * 116.86600 * 179.81584 * 11 10 9 13 13 C 1.33326 * 114.57969 * 0.46912 * 12 11 10 14 14 C 1.50694 * 125.95259 * 179.75287 * 13 12 11 15 15 O 1.42895 * 109.47390 * 299.97828 * 14 13 12 16 16 Si 1.86307 * 109.47186 * 179.97438 * 14 13 12 17 17 S 1.70966 * 124.94894 * 180.02562 * 10 9 7 18 18 C 1.52997 * 109.47602 * 60.00006 * 7 6 5 19 19 C 1.52996 * 109.47421 * 295.00251 * 3 2 1 20 20 H 1.09000 * 109.47214 * 300.00214 * 1 2 3 21 21 H 1.09004 * 109.47390 * 59.99838 * 1 2 3 22 22 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46884 * 240.00686 * 2 1 3 24 24 H 1.08991 * 109.47114 * 120.00276 * 2 1 3 25 25 H 1.08999 * 109.46803 * 60.00246 * 5 3 2 26 26 H 1.08998 * 109.47154 * 300.00451 * 5 3 2 27 27 H 1.08996 * 109.47167 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46425 * 59.99905 * 6 5 3 29 29 H 0.97005 * 119.99811 * 335.00008 * 9 7 6 30 30 H 1.07994 * 122.70967 * 180.23319 * 12 11 10 31 31 H 1.08999 * 109.47194 * 59.98101 * 14 13 12 32 32 H 0.96697 * 113.99931 * 300.00364 * 15 14 13 33 33 H 1.48500 * 109.99941 * 180.02562 * 16 14 13 34 34 H 1.48500 * 109.99727 * 301.31734 * 16 14 13 35 35 H 1.09001 * 109.47659 * 59.99432 * 18 7 6 36 36 H 1.08995 * 109.47574 * 180.02562 * 18 7 6 37 37 H 1.08999 * 109.46985 * 299.99965 * 19 3 2 38 38 H 1.09005 * 109.47475 * 59.99766 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 6 4.0748 2.8869 0.1264 7 6 3.6700 3.5715 -1.1806 8 1 4.1046 3.0328 -2.0226 9 7 4.1578 4.9529 -1.1797 10 6 4.3942 5.6051 -2.3796 11 7 4.2223 5.0843 -3.5548 12 6 4.4940 5.8532 -4.5943 13 6 4.9240 7.0761 -4.2822 14 6 5.3103 8.1547 -5.2610 15 8 6.3898 7.6940 -6.0762 16 14 5.8420 9.6777 -4.3290 17 16 4.9626 7.2109 -2.5260 18 6 2.1452 3.5697 -1.3063 19 6 1.6352 2.1266 -1.3073 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 3.9994 0.9053 -0.7161 26 1 3.8532 0.9569 1.0571 27 1 5.1611 2.8882 0.2165 28 1 3.6401 3.4254 0.9685 29 1 4.3191 5.4098 -0.3393 30 1 4.3808 5.5171 -5.6143 31 1 4.4552 8.3954 -5.8926 32 1 7.1860 7.4610 -5.5795 33 1 6.2250 10.7493 -5.2832 34 1 4.7387 10.1484 -3.4536 35 1 1.7105 4.1083 -0.4642 36 1 1.8568 4.0570 -2.2376 37 1 2.0698 1.5876 -2.1491 38 1 0.5489 2.1253 -1.3969 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10466080_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:49 Heat of formation + Delta-G solvation = 0.975476 kcal Electronic energy + Delta-G solvation = -18544.436465 eV Core-core repulsion = 15707.383383 eV Total energy + Delta-G solvation = -2837.053082 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94705 -39.93909 -37.93486 -36.64918 -33.75217 -31.76034 -31.32905 -29.25750 -26.56628 -25.06638 -24.14982 -23.41863 -21.94164 -20.91082 -20.62008 -19.59044 -18.16948 -17.15863 -16.66591 -16.35619 -15.95061 -15.83109 -15.53009 -15.41520 -14.97142 -14.92254 -14.42436 -14.26678 -14.06081 -13.80180 -13.18961 -12.91763 -12.81738 -12.49684 -12.46150 -12.39074 -12.09325 -12.02624 -11.67446 -11.46263 -11.38949 -11.13063 -10.84974 -10.75953 -10.25870 -10.17068 -8.73665 -5.11565 -0.05937 0.01820 0.66130 1.26348 1.57334 1.87789 1.97452 2.18384 3.49780 3.62743 3.66769 3.72289 3.87590 3.93114 4.08837 4.16196 4.35774 4.39710 4.47511 4.48802 4.53262 4.54561 4.69731 4.70536 4.76494 4.84185 4.95487 5.06023 5.09362 5.13596 5.19115 5.20893 5.26315 5.29423 5.32956 5.50475 5.58631 5.86096 6.17395 6.71988 7.02057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.085 4.085 4 H 0.073 0.927 5 C -0.109 4.109 6 C -0.120 4.120 7 C 0.165 3.835 8 H 0.070 0.930 9 N -0.682 5.682 10 C 0.317 3.683 11 N -0.578 5.578 12 C 0.104 3.896 13 C -0.310 4.310 14 C -0.014 4.014 15 O -0.550 6.550 16 Si 0.731 3.269 17 S 0.112 5.888 18 C -0.122 4.122 19 C -0.108 4.108 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.423 0.577 30 H 0.176 0.824 31 H 0.117 0.883 32 H 0.395 0.605 33 H -0.271 1.271 34 H -0.269 1.269 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -0.662 5.053 5.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.092 0.908 5 C -0.147 4.147 6 C -0.158 4.158 7 C 0.059 3.941 8 H 0.088 0.912 9 N -0.322 5.322 10 C -0.053 4.053 11 N -0.305 5.305 12 C -0.047 4.047 13 C -0.433 4.433 14 C -0.127 4.127 15 O -0.358 6.358 16 Si 0.635 3.365 17 S 0.361 5.639 18 C -0.161 4.161 19 C -0.147 4.147 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.263 0.737 30 H 0.193 0.807 31 H 0.135 0.865 32 H 0.245 0.755 33 H -0.197 1.197 34 H -0.195 1.195 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.277 0.358 5.420 5.580 hybrid contribution -0.706 -0.491 -1.104 1.400 sum 0.571 -0.133 4.316 4.355 Atomic orbital electron populations 1.21837 0.96028 1.01645 1.01843 1.21557 0.95836 0.96226 1.02093 1.21195 0.95585 0.95909 0.97631 0.90815 1.21524 0.94900 0.95532 1.02725 1.21769 1.01731 0.96352 0.95919 1.20994 0.93585 0.80215 0.99346 0.91200 1.44264 1.70781 1.14413 1.02711 1.23970 0.96746 0.93846 0.90771 1.66489 1.29525 1.37283 0.97176 1.21426 0.95816 0.89218 0.98242 1.25689 1.19628 1.02330 0.95617 1.24229 0.92595 1.01315 0.94587 1.86473 1.24947 1.87905 1.36482 0.94091 0.86037 0.75645 0.80755 1.83788 1.66207 1.10601 1.03266 1.21870 0.95419 0.97468 1.01360 1.21562 1.00799 0.94492 0.97807 0.92642 0.92777 0.92838 0.92310 0.91525 0.92102 0.90406 0.90665 0.90147 0.73748 0.80703 0.86543 0.75513 1.19690 1.19470 0.91427 0.93703 0.92543 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.25 9.67 71.98 0.70 0.94 16 2 C -0.12 0.27 5.40 30.59 0.17 0.43 16 3 C -0.08 0.24 2.19 -10.80 -0.02 0.22 16 4 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 5 C -0.11 0.43 5.20 30.60 0.16 0.59 16 6 C -0.12 0.56 5.39 30.59 0.16 0.73 16 7 C 0.17 -0.10 2.59 44.99 0.12 0.02 16 8 H 0.07 0.29 7.75 -2.39 -0.02 0.27 16 9 N -0.68 0.66 5.23 -330.41 -1.73 -1.07 16 10 C 0.32 1.10 8.06 179.32 1.45 2.55 16 11 N -0.58 -4.36 9.90 -202.03 -2.00 -6.36 16 12 C 0.10 0.57 11.22 83.54 0.94 1.51 16 13 C -0.31 -0.76 5.74 24.57 0.14 -0.62 16 14 C -0.01 -0.01 2.99 71.23 0.21 0.20 16 15 O -0.55 -0.52 12.87 -148.98 -1.92 -2.44 16 16 Si 0.73 -0.63 31.05 68.60 2.13 1.50 16 17 S 0.11 0.04 20.57 -56.49 -1.16 -1.12 16 18 C -0.12 -0.06 5.51 30.61 0.17 0.10 16 19 C -0.11 0.06 4.96 30.61 0.15 0.21 16 20 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 21 H 0.05 -0.05 6.57 -2.38 -0.02 -0.07 16 22 H 0.05 -0.08 8.14 -2.39 -0.02 -0.09 16 23 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 24 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.06 -0.15 8.14 -2.39 -0.02 -0.16 16 26 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.42 -2.48 8.73 -92.70 -0.81 -3.29 16 30 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 31 H 0.12 0.14 7.96 -2.39 -0.02 0.12 16 32 H 0.39 -2.60 8.70 -74.06 -0.64 -3.24 16 33 H -0.27 -1.35 7.11 99.48 0.71 -0.64 16 34 H -0.27 -0.99 7.11 99.48 0.71 -0.29 16 35 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.07 -0.01 6.57 -2.38 -0.02 -0.02 16 Total: 0.00 -10.47 314.79 -0.70 -11.17 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -0.36 Total: -8.56 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 4.34 Total: 6.87 kcal Atomic # 7 Polarization: -3.70 SS G_CDS: -3.73 Total: -7.43 kcal Atomic # 8 Polarization: -0.52 SS G_CDS: -1.92 Total: -2.44 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: 2.13 Total: 1.50 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.16 Total: -1.12 kcal Total: -10.47 -0.70 -11.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10466080_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.148 kcal (2) G-P(sol) polarization free energy of solvation -10.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds