Wall clock time and date at job start Mon Mar 8 2021 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.46665 * 2 1 4 4 C 1.50703 * 109.47219 * 240.00410 * 2 1 3 5 5 C 1.38017 * 120.33777 * 119.97071 * 4 2 1 6 6 N 1.31971 * 120.85544 * 179.74612 * 5 4 2 7 7 C 1.32399 * 121.62353 * 0.56621 * 6 5 4 8 8 N 1.39003 * 119.70300 * 179.71248 * 7 6 5 9 9 C 1.46496 * 119.99437 * 179.73131 * 8 7 6 10 10 H 1.09000 * 112.91246 * 23.74661 * 9 8 7 11 11 C 1.53786 * 113.61518 * 154.99902 * 9 8 7 12 12 C 1.53781 * 87.17350 * 89.15486 * 11 9 8 13 13 H 1.08997 * 113.61223 * 270.84552 * 12 11 9 14 14 C 1.50698 * 113.61342 * 140.02323 * 12 11 9 15 15 C 1.38245 * 119.97629 * 299.72562 * 14 12 11 16 16 C 1.38197 * 120.02565 * 179.72561 * 15 14 12 17 17 C 1.38460 * 119.97261 * 0.57335 * 16 15 14 18 18 F 1.35108 * 120.02585 * 179.68490 * 17 16 15 19 19 C 1.38455 * 119.94865 * 359.70011 * 17 16 15 20 20 C 1.38201 * 119.97779 * 0.02562 * 19 17 16 21 21 C 1.53782 * 87.08260 * 25.39213 * 12 11 9 22 22 C 1.39136 * 120.58568 * 359.44065 * 7 6 5 23 23 C 1.38293 * 119.09525 * 0.26853 * 22 7 6 24 24 H 0.96699 * 114.00782 * 60.00210 * 1 2 3 25 25 H 1.08998 * 109.47585 * 119.99777 * 2 1 3 26 26 H 1.48500 * 109.99725 * 298.68287 * 3 2 1 27 27 H 1.48489 * 109.99815 * 60.00322 * 3 2 1 28 28 H 1.08004 * 119.57365 * 0.02562 * 5 4 2 29 29 H 0.97001 * 120.00446 * 359.72412 * 8 7 6 30 30 H 1.09002 * 113.61357 * 334.56403 * 11 9 8 31 31 H 1.09002 * 113.61608 * 203.74565 * 11 9 8 32 32 H 1.08002 * 119.98289 * 359.97438 * 15 14 12 33 33 H 1.08001 * 120.01321 * 180.25359 * 16 15 14 34 34 H 1.08004 * 120.00992 * 180.02562 * 19 17 16 35 35 H 1.08000 * 119.99044 * 179.97438 * 20 19 17 36 36 H 1.08997 * 113.61668 * 89.11298 * 21 12 11 37 37 H 1.08994 * 113.61387 * 220.02033 * 21 12 11 38 38 H 1.08000 * 120.44606 * 180.29713 * 22 7 6 39 39 H 1.08008 * 120.74276 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7247 -0.0461 -2.1438 6 7 3.1744 -0.6596 -3.2223 7 6 2.8763 -1.9243 -3.4766 8 7 3.3668 -2.5294 -4.6279 9 6 3.0459 -3.9301 -4.9126 10 1 2.1321 -4.2645 -4.4213 11 6 3.1063 -4.2844 -6.4078 12 6 4.5924 -4.6154 -6.1914 13 1 5.2547 -3.7608 -6.3298 14 6 5.0532 -5.8401 -6.9389 15 6 4.4665 -7.0658 -6.6849 16 6 4.8843 -8.1885 -7.3739 17 6 5.8992 -8.0876 -8.3104 18 9 6.3129 -9.1857 -8.9800 19 6 6.4899 -6.8605 -8.5599 20 6 6.0665 -5.7380 -7.8737 21 6 4.2366 -4.8870 -4.7201 22 6 2.0812 -2.6545 -2.5989 23 6 1.6001 -2.0399 -1.4573 24 1 -0.3934 0.4416 -0.7650 25 1 1.7924 -0.5138 0.8900 26 1 1.5876 2.4586 -1.2242 27 1 1.5614 2.4679 1.2085 28 1 2.9847 0.9879 -1.9714 29 1 3.9214 -2.0242 -5.2428 30 1 2.9403 -3.4313 -7.0657 31 1 2.5008 -5.1501 -6.6763 32 1 3.6785 -7.1452 -5.9506 33 1 4.4230 -9.1453 -7.1782 34 1 7.2813 -6.7805 -9.2905 35 1 6.5275 -4.7808 -8.0679 36 1 3.9398 -5.9176 -4.5258 37 1 4.9830 -4.5204 -4.0156 38 1 1.8435 -3.6875 -2.8061 39 1 0.9810 -2.5818 -0.7576 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10466352_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:37:42 Heat of formation + Delta-G solvation = 28.967389 kcal Electronic energy + Delta-G solvation = -22822.263626 eV Core-core repulsion = 19225.988819 eV Total energy + Delta-G solvation = -3596.274807 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.91824 -41.64295 -40.89855 -39.09330 -37.93965 -35.30417 -33.39581 -32.12447 -31.83515 -30.65902 -26.72994 -26.65099 -25.64020 -24.71155 -24.05978 -22.94597 -22.25234 -20.10979 -19.00655 -18.63736 -18.51287 -17.43894 -17.35261 -16.87557 -16.62450 -16.44241 -16.26537 -16.03261 -15.66788 -15.32077 -15.14693 -14.83475 -14.48329 -14.34180 -14.17812 -13.99398 -13.86298 -13.62174 -13.41014 -13.27525 -12.97087 -12.47979 -12.15050 -12.05323 -11.82940 -11.75598 -11.20468 -11.03639 -10.72648 -10.52053 -10.37692 -10.07463 -9.48607 -8.67215 -4.90461 0.12230 0.24607 0.26774 0.42465 1.34978 1.61391 1.97380 2.08715 2.55991 2.83646 3.30155 3.45814 3.48389 3.62449 3.66882 3.72432 3.80317 3.83008 3.95927 3.99953 4.01474 4.10778 4.21890 4.31964 4.37646 4.43618 4.56213 4.66178 4.79126 4.81171 4.86351 4.93146 5.03183 5.04941 5.07291 5.09798 5.16999 5.22469 5.29266 5.36481 5.56861 5.63179 5.92368 6.08773 6.51306 6.56575 7.16818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.062 4.062 3 Si 0.754 3.246 4 C -0.234 4.234 5 C 0.145 3.855 6 N -0.566 5.566 7 C 0.398 3.602 8 N -0.702 5.702 9 C 0.128 3.872 10 H 0.109 0.891 11 C -0.129 4.129 12 C -0.069 4.069 13 H 0.102 0.898 14 C -0.080 4.080 15 C -0.088 4.088 16 C -0.158 4.158 17 C 0.063 3.937 18 F -0.156 7.156 19 C -0.161 4.161 20 C -0.093 4.093 21 C -0.144 4.144 22 C -0.240 4.240 23 C -0.013 4.013 24 H 0.385 0.615 25 H 0.126 0.874 26 H -0.285 1.285 27 H -0.301 1.301 28 H 0.166 0.834 29 H 0.407 0.593 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.153 0.847 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -0.505 0.470 0.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.172 4.172 3 Si 0.660 3.340 4 C -0.240 4.240 5 C -0.012 4.012 6 N -0.284 5.284 7 C 0.162 3.838 8 N -0.333 5.333 9 C 0.022 3.978 10 H 0.127 0.873 11 C -0.167 4.167 12 C -0.087 4.087 13 H 0.120 0.880 14 C -0.081 4.081 15 C -0.105 4.105 16 C -0.177 4.177 17 C 0.044 3.956 18 F -0.135 7.135 19 C -0.180 4.180 20 C -0.111 4.111 21 C -0.183 4.183 22 C -0.265 4.265 23 C -0.038 4.038 24 H 0.234 0.766 25 H 0.143 0.857 26 H -0.212 1.212 27 H -0.229 1.229 28 H 0.182 0.818 29 H 0.243 0.757 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.170 0.830 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.494 0.217 0.364 0.651 hybrid contribution -1.043 -0.646 -0.559 1.348 sum -0.549 -0.429 -0.195 0.724 Atomic orbital electron populations 1.86559 1.18715 1.80262 1.50148 1.24880 0.83131 1.10973 0.98215 0.94259 0.90551 0.72699 0.76442 1.20963 1.05944 0.96727 1.00338 1.22433 0.91654 0.99259 0.87815 1.67143 1.28267 1.10016 1.22935 1.18620 0.89385 0.88372 0.87453 1.44253 1.55547 1.11525 1.21964 1.21997 0.98748 0.79772 0.97303 0.87280 1.23425 0.95246 1.02865 0.95189 1.21560 0.97043 0.95011 0.95097 0.88021 1.19980 0.95985 0.95292 0.96795 1.21146 0.99836 0.90670 0.98884 1.21396 0.97555 1.01588 0.97114 1.18131 0.98285 0.83313 0.95848 1.91474 1.89733 1.52936 1.79355 1.21369 1.02247 0.91604 1.02773 1.21205 0.96364 0.98529 0.95029 1.23695 0.98295 1.00908 0.95383 1.21708 1.04889 1.02773 0.97085 1.21407 0.93889 0.93292 0.95261 0.76638 0.85658 1.21167 1.22929 0.81752 0.75707 0.90498 0.87304 0.82523 0.83725 0.84170 0.83449 0.87374 0.91470 0.82954 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.97 12.78 -148.98 -1.90 -2.88 16 2 C -0.06 0.07 2.84 71.24 0.20 0.27 16 3 Si 0.75 -1.33 29.82 68.60 2.05 0.71 16 4 C -0.23 -0.04 5.40 -19.76 -0.11 -0.15 16 5 C 0.15 0.25 9.84 84.62 0.83 1.08 16 6 N -0.57 -2.59 10.39 -193.27 -2.01 -4.60 16 7 C 0.40 0.63 7.65 133.06 1.02 1.64 16 8 N -0.70 2.05 5.44 -321.75 -1.75 0.30 16 9 C 0.13 -0.94 4.12 45.58 0.19 -0.75 16 10 H 0.11 -0.97 6.10 -2.39 -0.01 -0.99 16 11 C -0.13 1.07 7.29 31.12 0.23 1.30 16 12 C -0.07 0.49 3.86 -11.01 -0.04 0.44 16 13 H 0.10 -0.72 8.09 -2.39 -0.02 -0.74 16 14 C -0.08 0.30 5.29 -19.86 -0.11 0.20 16 15 C -0.09 0.35 8.62 22.26 0.19 0.54 16 16 C -0.16 0.01 10.03 22.31 0.22 0.24 16 17 C 0.06 0.24 7.30 22.37 0.16 0.41 16 18 F -0.16 -1.20 17.27 44.97 0.78 -0.42 16 19 C -0.16 -0.19 10.03 22.31 0.22 0.03 16 20 C -0.09 0.19 9.71 22.26 0.22 0.41 16 21 C -0.14 1.09 7.26 31.18 0.23 1.32 16 22 C -0.24 0.20 9.29 22.50 0.21 0.41 16 23 C -0.01 0.00 9.76 22.44 0.22 0.22 16 24 H 0.38 -1.25 8.70 -74.06 -0.64 -1.90 16 25 H 0.13 -0.38 7.96 -2.39 -0.02 -0.40 16 26 H -0.28 -0.72 7.11 99.48 0.71 -0.01 16 27 H -0.30 -1.76 7.11 99.48 0.71 -1.05 16 28 H 0.17 -0.32 4.88 -2.91 -0.01 -0.34 16 29 H 0.41 -1.32 8.83 -92.71 -0.82 -2.14 16 30 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.11 -1.05 7.73 -2.39 -0.02 -1.07 16 32 H 0.16 -1.45 6.64 -2.91 -0.02 -1.47 16 33 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 34 H 0.14 -0.12 8.06 -2.91 -0.02 -0.15 16 35 H 0.15 -0.86 8.05 -2.91 -0.02 -0.89 16 36 H 0.11 -1.07 6.30 -2.39 -0.02 -1.08 16 37 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.15 -0.81 6.03 -2.91 -0.02 -0.83 16 39 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -14.80 327.97 0.73 -14.07 By element: Atomic # 1 Polarization: -14.48 SS G_CDS: -0.32 Total: -14.80 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 3.89 Total: 7.61 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -3.76 Total: -4.30 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: -1.90 Total: -2.88 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.78 Total: -0.42 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: 2.05 Total: 0.71 kcal Total: -14.80 0.73 -14.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10466352_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.040 kcal (2) G-P(sol) polarization free energy of solvation -14.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds