Wall clock time and date at job start Mon Mar 8 2021 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86305 * 109.47394 * 2 1 4 4 C 1.50705 * 109.47107 * 240.00366 * 2 1 3 5 5 C 1.33329 * 125.94890 * 299.99955 * 4 2 1 6 6 N 1.32123 * 114.57474 * 180.02562 * 5 4 2 7 7 C 1.29686 * 116.86765 * 0.02562 * 6 5 4 8 8 N 1.38614 * 124.94783 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99797 * 0.02562 * 8 7 6 10 10 H 1.08996 * 112.85192 * 336.19871 * 9 8 7 11 11 C 1.53956 * 113.53444 * 107.50519 * 9 8 7 12 12 C 1.53781 * 87.02038 * 89.18420 * 11 9 8 13 13 H 1.09000 * 113.61796 * 270.77073 * 12 11 9 14 14 C 1.50708 * 113.61354 * 139.94866 * 12 11 9 15 15 C 1.38242 * 119.97079 * 140.86763 * 14 12 11 16 16 C 1.38205 * 120.02001 * 179.97438 * 15 14 12 17 17 C 1.38455 * 119.97502 * 0.02562 * 16 15 14 18 18 F 1.35106 * 120.02241 * 179.97438 * 17 16 15 19 19 C 1.38458 * 119.95220 * 359.97438 * 17 16 15 20 20 C 1.38198 * 119.97324 * 0.02562 * 19 17 16 21 21 C 1.53778 * 87.17182 * 25.36209 * 12 11 9 22 22 S 1.70957 * 110.10249 * 0.24332 * 7 6 5 23 23 H 0.96703 * 113.99994 * 299.99794 * 1 2 3 24 24 H 1.08999 * 109.47572 * 120.00553 * 2 1 3 25 25 H 1.48493 * 110.00407 * 178.67780 * 3 2 1 26 26 H 1.48493 * 110.00112 * 300.00458 * 3 2 1 27 27 H 1.07997 * 122.71253 * 359.97438 * 5 4 2 28 28 H 0.96993 * 119.99922 * 180.02562 * 8 7 6 29 29 H 1.09000 * 113.67039 * 334.65951 * 11 9 8 30 30 H 1.08998 * 113.61267 * 203.70460 * 11 9 8 31 31 H 1.07994 * 119.98958 * 0.25380 * 15 14 12 32 32 H 1.08001 * 120.00504 * 180.02562 * 16 15 14 33 33 H 1.07996 * 120.01541 * 179.97438 * 19 17 16 34 34 H 1.08000 * 119.98611 * 180.02562 * 20 19 17 35 35 H 1.09001 * 113.61753 * 89.15416 * 21 12 11 36 36 H 1.09006 * 113.61847 * 220.05950 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6834 -1.9788 -1.5581 6 7 2.2384 -2.3723 -2.6907 7 6 2.9438 -1.4944 -3.3338 8 7 3.5981 -1.7261 -4.5337 9 6 3.5199 -3.0444 -5.1679 10 1 3.2989 -3.8426 -4.4594 11 6 2.6334 -3.0696 -6.4263 12 6 3.8953 -2.7024 -7.2249 13 1 4.0572 -1.6284 -7.3162 14 6 4.0074 -3.4253 -8.5425 15 6 4.4829 -2.7599 -9.6570 16 6 4.5867 -3.4219 -10.8657 17 6 4.2138 -4.7520 -10.9602 18 9 4.3144 -5.4000 -12.1414 19 6 3.7377 -5.4174 -9.8432 20 6 3.6348 -4.7534 -8.6356 21 6 4.7082 -3.3539 -6.0938 22 16 2.9554 -0.0120 -2.4824 23 1 -0.3933 0.4417 0.7651 24 1 1.7924 -0.5139 0.8899 25 1 3.5346 1.7703 0.0322 26 1 1.5615 2.4679 -1.2084 27 1 1.0785 -2.6320 -0.9467 28 1 4.1076 -1.0154 -4.9533 29 1 1.8681 -2.2935 -6.4381 30 1 2.2391 -4.0578 -6.6629 31 1 4.7776 -1.7236 -9.5821 32 1 4.9586 -2.9019 -11.7362 33 1 3.4462 -6.4547 -9.9158 34 1 3.2639 -5.2724 -7.7641 35 1 4.8821 -4.4201 -6.2392 36 1 5.6156 -2.8071 -5.8372 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10466352_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:37:45 Heat of formation + Delta-G solvation = 36.477751 kcal Electronic energy + Delta-G solvation = -21407.023960 eV Core-core repulsion = 17900.227073 eV Total energy + Delta-G solvation = -3506.796887 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.078 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.94564 -41.45652 -40.59969 -39.08912 -37.73936 -35.33422 -32.16047 -31.85258 -31.00194 -26.95056 -26.68203 -26.04178 -24.56868 -24.02662 -22.77923 -21.25286 -20.23275 -19.30024 -18.77470 -18.44364 -17.79737 -17.36438 -16.83680 -16.65085 -16.59700 -16.06426 -15.81760 -15.44016 -15.41481 -15.10799 -14.58242 -14.51149 -14.35077 -14.23665 -13.98952 -13.63929 -13.52660 -13.08932 -12.88373 -12.53810 -12.23866 -12.15591 -11.93910 -11.82868 -11.30436 -11.11409 -10.75828 -10.42315 -10.21585 -10.10688 -9.52742 -8.84314 -5.18323 -0.19513 -0.05562 0.08736 0.23418 0.50659 1.24512 1.57671 1.86086 1.92891 2.03757 2.52063 3.26727 3.37935 3.50011 3.57612 3.64687 3.66617 3.79365 3.92675 3.93315 3.97805 4.17163 4.29047 4.38739 4.49238 4.56042 4.63815 4.73654 4.75423 4.85954 4.96676 4.99044 5.01065 5.03442 5.14175 5.21207 5.26364 5.55801 5.79502 5.88841 6.04718 6.85667 6.93387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.023 4.023 3 Si 0.755 3.245 4 C -0.274 4.274 5 C 0.110 3.890 6 N -0.569 5.569 7 C 0.329 3.671 8 N -0.666 5.666 9 C 0.133 3.867 10 H 0.094 0.906 11 C -0.143 4.143 12 C -0.065 4.065 13 H 0.110 0.890 14 C -0.081 4.081 15 C -0.090 4.090 16 C -0.160 4.160 17 C 0.065 3.935 18 F -0.155 7.155 19 C -0.158 4.158 20 C -0.089 4.089 21 C -0.125 4.125 22 S 0.055 5.945 23 H 0.405 0.595 24 H 0.106 0.894 25 H -0.273 1.273 26 H -0.286 1.286 27 H 0.189 0.811 28 H 0.424 0.576 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.107 0.893 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 2.982 4.833 5.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.136 4.136 3 Si 0.659 3.341 4 C -0.396 4.396 5 C -0.040 4.040 6 N -0.296 5.296 7 C -0.042 4.042 8 N -0.305 5.305 9 C 0.025 3.975 10 H 0.112 0.888 11 C -0.182 4.182 12 C -0.084 4.084 13 H 0.128 0.872 14 C -0.081 4.081 15 C -0.108 4.108 16 C -0.178 4.178 17 C 0.046 3.954 18 F -0.134 7.134 19 C -0.177 4.177 20 C -0.107 4.107 21 C -0.164 4.164 22 S 0.303 5.697 23 H 0.257 0.743 24 H 0.123 0.877 25 H -0.199 1.199 26 H -0.213 1.213 27 H 0.205 0.795 28 H 0.263 0.737 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.126 0.874 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.922 3.515 3.364 5.231 hybrid contribution -0.330 -0.990 -0.521 1.166 sum 1.592 2.525 2.842 4.122 Atomic orbital electron populations 1.86460 1.17045 1.82345 1.51514 1.23845 0.85718 1.09662 0.94406 0.94180 0.78572 0.75806 0.85513 1.24662 1.12760 0.97911 1.04267 1.21576 0.97111 0.93540 0.91791 1.66469 1.18104 1.33902 1.11090 1.23947 0.94773 0.92922 0.92514 1.43808 1.53608 1.14744 1.18371 1.21971 0.97700 0.84095 0.93729 0.88752 1.23638 0.96491 1.03181 0.94865 1.21592 0.97034 0.99979 0.89747 0.87221 1.19944 0.98658 0.94120 0.95426 1.21210 0.97696 1.01016 0.90890 1.21385 1.02916 0.92963 1.00580 1.18116 1.03556 0.92127 0.81596 1.91475 1.94274 1.81790 1.45867 1.21373 1.02250 1.01827 0.92247 1.21117 0.98146 0.94200 0.97257 1.23434 0.96897 1.02991 0.93028 1.84105 1.51983 1.15206 1.18359 0.74325 0.87653 1.19902 1.21280 0.79456 0.73687 0.91815 0.87989 0.83054 0.83906 0.83838 0.83109 0.87450 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.35 12.84 -148.98 -1.91 -1.56 16 2 C -0.02 0.01 2.98 71.24 0.21 0.23 16 3 Si 0.76 -1.34 31.05 68.60 2.13 0.79 16 4 C -0.27 -1.52 5.78 24.58 0.14 -1.38 16 5 C 0.11 0.75 11.22 83.54 0.94 1.69 16 6 N -0.57 -4.84 9.83 -202.03 -1.99 -6.82 16 7 C 0.33 1.74 8.09 179.32 1.45 3.19 16 8 N -0.67 0.45 5.42 -327.61 -1.77 -1.32 16 9 C 0.13 -0.30 4.45 45.58 0.20 -0.10 16 10 H 0.09 0.11 7.66 -2.39 -0.02 0.09 16 11 C -0.14 0.45 7.27 31.18 0.23 0.68 16 12 C -0.07 0.36 3.85 -11.01 -0.04 0.32 16 13 H 0.11 -0.82 8.09 -2.39 -0.02 -0.84 16 14 C -0.08 0.20 5.29 -19.86 -0.11 0.09 16 15 C -0.09 0.15 9.71 22.26 0.22 0.37 16 16 C -0.16 -0.25 10.03 22.31 0.22 -0.03 16 17 C 0.07 0.31 7.30 22.37 0.16 0.47 16 18 F -0.16 -1.29 17.27 44.97 0.78 -0.52 16 19 C -0.16 -0.24 10.03 22.31 0.22 -0.01 16 20 C -0.09 0.16 8.53 22.26 0.19 0.35 16 21 C -0.13 0.77 7.29 31.12 0.23 0.99 16 22 S 0.06 0.29 20.57 -56.49 -1.16 -0.87 16 23 H 0.40 -4.67 8.74 -74.06 -0.65 -5.32 16 24 H 0.11 -0.57 7.96 -2.39 -0.02 -0.59 16 25 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 26 H -0.29 -1.71 7.11 99.48 0.71 -1.00 16 27 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 28 H 0.42 -2.18 8.82 -92.71 -0.82 -2.99 16 29 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.10 -0.42 6.39 -2.39 -0.02 -0.44 16 31 H 0.15 -0.95 8.05 -2.91 -0.02 -0.97 16 32 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 33 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 34 H 0.15 -0.88 6.72 -2.91 -0.02 -0.90 16 35 H 0.11 -0.73 7.64 -2.39 -0.02 -0.75 16 36 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 Total: 0.00 -17.73 323.54 0.04 -17.69 By element: Atomic # 1 Polarization: -13.94 SS G_CDS: -0.29 Total: -14.23 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.27 Total: 6.85 kcal Atomic # 7 Polarization: -4.39 SS G_CDS: -3.76 Total: -8.15 kcal Atomic # 8 Polarization: 0.35 SS G_CDS: -1.91 Total: -1.56 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.78 Total: -0.52 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.13 Total: 0.79 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.16 Total: -0.87 kcal Total: -17.73 0.04 -17.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10466352_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.166 kcal (2) G-P(sol) polarization free energy of solvation -17.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds