Wall clock time and date at job start Mon Mar 8 2021 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38013 * 120.33417 * 120.00387 * 4 2 1 6 6 N 1.31979 * 120.85998 * 179.97438 * 5 4 2 7 7 C 1.32395 * 121.61533 * 0.02562 * 6 5 4 8 8 N 1.39008 * 119.70234 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99906 * 180.02562 * 8 7 6 10 10 H 1.08993 * 112.85279 * 23.79990 * 9 8 7 11 11 C 1.53778 * 113.61570 * 155.00331 * 9 8 7 12 12 C 1.53780 * 87.08374 * 89.11174 * 11 9 8 13 13 H 1.09002 * 113.61460 * 270.80410 * 12 11 9 14 14 C 1.50700 * 113.61377 * 139.98142 * 12 11 9 15 15 C 1.38329 * 120.00572 * 119.72731 * 14 12 11 16 16 Cl 1.73596 * 120.01378 * 359.97438 * 15 14 12 17 17 C 1.38380 * 119.97191 * 179.70207 * 15 14 12 18 18 C 1.38191 * 119.98610 * 0.55158 * 17 15 14 19 19 C 1.38270 * 120.01175 * 359.74677 * 18 17 15 20 20 C 1.38212 * 120.02791 * 359.97438 * 19 18 17 21 21 C 1.53779 * 113.61245 * 252.49744 * 9 8 7 22 22 C 1.39134 * 120.59467 * 0.02562 * 7 6 5 23 23 C 1.38303 * 119.09229 * 359.74388 * 22 7 6 24 24 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 25 25 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 26 26 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 27 27 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 28 28 H 1.08000 * 119.57232 * 359.97438 * 5 4 2 29 29 H 0.96993 * 119.99928 * 0.02562 * 8 7 6 30 30 H 1.08999 * 113.61538 * 203.66342 * 11 9 8 31 31 H 1.09007 * 113.61212 * 334.48296 * 11 9 8 32 32 H 1.07998 * 120.00673 * 180.27431 * 17 15 14 33 33 H 1.08001 * 119.99275 * 179.77232 * 18 17 15 34 34 H 1.08000 * 119.98495 * 180.02562 * 19 18 17 35 35 H 1.07995 * 119.99755 * 180.02562 * 20 19 18 36 36 H 1.09005 * 113.61835 * 25.43372 * 21 9 8 37 37 H 1.09001 * 113.61721 * 156.33576 * 21 9 8 38 38 H 1.07997 * 120.45494 * 179.97438 * 22 7 6 39 39 H 1.08003 * 120.74695 * 180.25529 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7253 -0.0465 -2.1434 6 7 3.1713 -0.6587 -3.2241 7 6 2.8776 -1.9250 -3.4756 8 7 3.3685 -2.5304 -4.6266 9 6 3.0470 -3.9311 -4.9115 10 1 2.1322 -4.2636 -4.4211 11 6 3.1083 -4.2853 -6.4067 12 6 4.5941 -4.6154 -6.1871 13 1 5.2563 -3.7606 -6.3253 14 6 5.0569 -5.8407 -6.9324 15 6 6.0682 -5.7389 -7.8707 16 17 6.8043 -4.1995 -8.1904 17 6 6.4968 -6.8655 -8.5502 18 6 5.9065 -8.0896 -8.2995 19 6 4.8914 -8.1896 -7.3659 20 6 4.4669 -7.0657 -6.6827 21 6 4.2352 -4.8876 -4.7168 22 6 2.0812 -2.6548 -2.5987 23 6 1.6032 -2.0411 -1.4552 24 1 -0.3934 0.4418 0.7650 25 1 1.7923 -0.5138 0.8901 26 1 1.5616 2.4678 -1.2086 27 1 1.5878 2.4586 1.2241 28 1 2.9850 0.9876 -1.9712 29 1 3.9237 -2.0256 -5.2410 30 1 2.5037 -5.1515 -6.6753 31 1 2.9418 -3.4324 -7.0647 32 1 7.2894 -6.7875 -9.2797 33 1 6.2384 -8.9684 -8.8324 34 1 4.4307 -9.1466 -7.1700 35 1 3.6743 -7.1444 -5.9534 36 1 4.9800 -4.5208 -4.0104 37 1 3.9388 -5.9186 -4.5234 38 1 1.8427 -3.6874 -2.8062 39 1 0.9862 -2.5836 -0.7541 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10565094_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:16:15 Heat of formation + Delta-G solvation = 69.433311 kcal Electronic energy + Delta-G solvation = -22873.478508 eV Core-core repulsion = 19388.612618 eV Total energy + Delta-G solvation = -3484.865890 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.092 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67792 -40.96492 -39.30638 -37.91492 -37.42364 -35.45243 -33.47241 -32.16644 -31.66265 -30.87597 -26.82202 -26.71197 -25.72557 -24.75800 -23.72287 -22.85034 -22.19311 -20.09460 -19.03582 -18.51255 -18.08686 -17.86270 -16.86524 -16.60051 -16.43881 -16.09999 -15.73207 -15.41543 -15.31076 -14.90406 -14.79293 -14.75133 -14.50982 -14.03621 -13.92683 -13.83870 -13.55508 -13.37604 -12.92260 -12.67983 -12.51644 -12.37844 -12.14975 -12.03082 -11.84486 -11.50565 -11.22897 -11.05892 -10.74265 -10.58812 -10.29490 -9.83833 -9.58380 -8.68645 -4.92090 0.18110 0.22683 0.29483 0.41531 1.17100 1.32747 1.59356 1.95930 2.05831 2.63766 2.78515 3.42522 3.44504 3.57812 3.61682 3.68722 3.84970 3.87628 3.97067 3.99275 4.11335 4.12421 4.17002 4.36775 4.39291 4.41805 4.47588 4.61078 4.72552 4.77384 4.77914 4.82917 4.95136 5.00720 5.03368 5.05561 5.18231 5.30932 5.33375 5.48009 5.50226 5.58301 5.87750 6.06437 6.51742 6.63536 7.14119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.064 4.064 3 Si 0.748 3.252 4 C -0.199 4.199 5 C 0.143 3.857 6 N -0.567 5.567 7 C 0.396 3.604 8 N -0.704 5.704 9 C 0.131 3.869 10 H 0.114 0.886 11 C -0.127 4.127 12 C -0.082 4.082 13 H 0.092 0.908 14 C -0.070 4.070 15 C -0.054 4.054 16 Cl -0.081 7.081 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.138 4.138 22 C -0.238 4.238 23 C -0.013 4.013 24 H 0.394 0.606 25 H 0.098 0.902 26 H -0.303 1.303 27 H -0.282 1.282 28 H 0.164 0.836 29 H 0.404 0.596 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.157 0.843 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 -5.577 2.433 6.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.173 4.173 3 Si 0.654 3.346 4 C -0.204 4.204 5 C -0.014 4.014 6 N -0.284 5.284 7 C 0.160 3.840 8 N -0.335 5.335 9 C 0.025 3.975 10 H 0.132 0.868 11 C -0.165 4.165 12 C -0.100 4.100 13 H 0.110 0.890 14 C -0.070 4.070 15 C -0.081 4.081 16 Cl -0.052 7.052 17 C -0.142 4.142 18 C -0.137 4.137 19 C -0.132 4.132 20 C -0.126 4.126 21 C -0.177 4.177 22 C -0.263 4.263 23 C -0.039 4.039 24 H 0.245 0.755 25 H 0.115 0.885 26 H -0.230 1.230 27 H -0.208 1.208 28 H 0.180 0.820 29 H 0.240 0.760 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.174 0.826 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.065 -4.660 1.243 4.823 hybrid contribution -1.016 0.171 0.446 1.122 sum -0.950 -4.489 1.689 4.889 Atomic orbital electron populations 1.86541 1.18695 1.80535 1.51114 1.24630 0.83785 1.10881 0.98050 0.94361 0.90673 0.73003 0.76553 1.20131 1.04744 0.96107 0.99380 1.22361 0.92329 0.99051 0.87641 1.67135 1.28608 1.10095 1.22576 1.18620 0.89570 0.88356 0.87455 1.44273 1.55524 1.11616 1.22068 1.21951 0.98830 0.79728 0.97015 0.86784 1.23411 0.94823 1.02838 0.95432 1.21662 0.97314 0.95162 0.95851 0.89013 1.19751 0.95001 0.96449 0.95826 1.21099 0.98751 0.87121 1.01111 1.98365 1.82119 1.29975 1.94749 1.21287 1.01014 0.91757 1.00131 1.21449 0.96475 0.97278 0.98458 1.21623 0.96463 0.99855 0.95308 1.21285 1.00307 0.90769 1.00278 1.23645 0.98211 1.01163 0.94707 1.21713 1.04718 1.02913 0.96915 1.21430 0.93653 0.93324 0.95464 0.75514 0.88455 1.23048 1.20827 0.81977 0.76015 0.86799 0.91051 0.84635 0.83380 0.83072 0.82710 0.91632 0.86768 0.82600 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.19 12.76 -148.98 -1.90 -3.09 16 2 C -0.06 0.01 2.83 71.24 0.20 0.21 16 3 Si 0.75 -0.54 29.82 68.60 2.05 1.50 16 4 C -0.20 -0.74 5.43 -19.76 -0.11 -0.85 16 5 C 0.14 0.81 9.84 84.62 0.83 1.65 16 6 N -0.57 -4.74 10.39 -193.27 -2.01 -6.75 16 7 C 0.40 1.96 7.65 133.06 1.02 2.98 16 8 N -0.70 -0.63 5.44 -322.06 -1.75 -2.38 16 9 C 0.13 -0.55 4.11 45.52 0.19 -0.37 16 10 H 0.11 -0.78 6.10 -2.39 -0.01 -0.80 16 11 C -0.13 0.56 7.29 31.12 0.23 0.79 16 12 C -0.08 0.17 3.64 -11.01 -0.04 0.13 16 13 H 0.09 0.09 6.58 -2.39 -0.02 0.07 16 14 C -0.07 0.02 5.29 -19.84 -0.10 -0.09 16 15 C -0.05 -0.15 6.31 22.33 0.14 -0.01 16 16 Cl -0.08 -0.34 27.16 -2.72 -0.07 -0.42 16 17 C -0.12 -0.13 9.83 22.29 0.22 0.09 16 18 C -0.12 0.25 10.05 22.27 0.22 0.47 16 19 C -0.11 0.44 10.05 22.27 0.22 0.67 16 20 C -0.11 0.40 8.61 22.26 0.19 0.59 16 21 C -0.14 0.63 7.25 31.12 0.23 0.85 16 22 C -0.24 -0.44 9.29 22.50 0.21 -0.23 16 23 C -0.01 -0.03 9.77 22.44 0.22 0.19 16 24 H 0.39 -2.34 8.74 -74.06 -0.65 -2.99 16 25 H 0.10 -0.46 7.96 -2.38 -0.02 -0.48 16 26 H -0.30 -2.25 7.11 99.48 0.71 -1.54 16 27 H -0.28 -0.77 7.11 99.48 0.71 -0.06 16 28 H 0.16 0.34 4.88 -2.91 -0.01 0.32 16 29 H 0.40 0.64 8.82 -92.71 -0.82 -0.18 16 30 H 0.11 -0.81 7.72 -2.39 -0.02 -0.83 16 31 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 32 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 33 H 0.15 -0.91 8.06 -2.91 -0.02 -0.93 16 34 H 0.15 -1.29 8.06 -2.91 -0.02 -1.32 16 35 H 0.16 -1.38 6.66 -2.91 -0.02 -1.40 16 36 H 0.06 -0.09 8.14 -2.38 -0.02 -0.10 16 37 H 0.11 -0.94 6.31 -2.39 -0.02 -0.95 16 38 H 0.16 -0.55 6.03 -2.91 -0.02 -0.56 16 39 H 0.15 -0.16 8.06 -2.91 -0.02 -0.19 16 Total: 0.00 -16.16 335.34 -0.14 -16.29 By element: Atomic # 1 Polarization: -11.91 SS G_CDS: -0.32 Total: -12.23 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 3.87 Total: 7.07 kcal Atomic # 7 Polarization: -5.37 SS G_CDS: -3.76 Total: -9.13 kcal Atomic # 8 Polarization: -1.19 SS G_CDS: -1.90 Total: -3.09 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.05 Total: 1.50 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.07 Total: -0.42 kcal Total: -16.16 -0.14 -16.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10565094_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.728 kcal (2) G-P(sol) polarization free energy of solvation -16.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds