Wall clock time and date at job start Mon Mar 8 2021 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33326 * 125.95126 * 2 1 4 4 C 1.50701 * 122.71041 * 359.95954 * 3 2 1 5 5 O 1.42903 * 109.46878 * 329.73854 * 4 3 2 6 6 Si 1.86303 * 109.47233 * 209.74083 * 4 3 2 7 7 N 1.32122 * 114.57833 * 179.69775 * 3 2 1 8 8 C 1.29676 * 116.86844 * 0.26396 * 7 3 2 9 9 N 1.38612 * 124.95462 * 180.02562 * 8 7 3 10 10 C 1.46494 * 120.00526 * 179.97438 * 9 8 7 11 11 H 1.09000 * 112.84956 * 336.20368 * 10 9 8 12 12 C 1.53784 * 113.61258 * 107.50250 * 10 9 8 13 13 C 1.53781 * 87.07970 * 89.11873 * 12 10 9 14 14 H 1.09006 * 113.69232 * 270.87104 * 13 12 10 15 15 C 1.50702 * 113.61708 * 139.98090 * 13 12 10 16 16 C 1.38323 * 120.00784 * 142.50076 * 15 13 12 17 17 Cl 1.73605 * 120.01556 * 0.02562 * 16 15 13 18 18 C 1.38380 * 119.97522 * 179.97438 * 16 15 13 19 19 C 1.38189 * 119.98291 * 0.02562 * 18 16 15 20 20 C 1.38260 * 120.01520 * 0.02562 * 19 18 16 21 21 C 1.38226 * 120.02630 * 359.69999 * 20 19 18 22 22 C 1.53783 * 87.08365 * 25.43220 * 13 12 10 23 23 S 1.70972 * 110.10270 * 0.02562 * 8 7 3 24 24 H 1.09002 * 109.47559 * 90.00431 * 1 2 3 25 25 H 1.09003 * 109.47509 * 210.00521 * 1 2 3 26 26 H 1.09003 * 109.47432 * 330.00355 * 1 2 3 27 27 H 1.09002 * 109.47060 * 89.73984 * 4 3 2 28 28 H 0.96700 * 114.00234 * 299.99722 * 5 4 3 29 29 H 1.48502 * 109.99951 * 180.02562 * 6 4 3 30 30 H 1.48507 * 109.99767 * 301.31682 * 6 4 3 31 31 H 0.97003 * 119.99483 * 0.02562 * 9 8 7 32 32 H 1.09003 * 113.61613 * 203.66581 * 12 10 9 33 33 H 1.09001 * 113.61610 * 334.57379 * 12 10 9 34 34 H 1.08000 * 120.00913 * 179.97438 * 18 16 15 35 35 H 1.08004 * 119.99319 * 179.97438 * 19 18 16 36 36 H 1.08002 * 119.98488 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.99138 * 180.29752 * 21 20 19 38 38 H 1.09000 * 113.61651 * 220.02298 * 22 13 12 39 39 H 1.08998 * 113.68821 * 89.12215 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 -0.0009 5 8 0.4844 2.5029 -0.6806 6 14 2.9364 3.6161 -0.8720 7 7 3.5849 0.8188 0.0063 8 6 3.9314 -0.4308 0.0064 9 7 5.2383 -0.8926 0.0130 10 6 5.5065 -2.3328 0.0128 11 1 4.6782 -2.9176 0.4130 12 6 6.0432 -2.8593 -1.3287 13 6 7.4520 -2.5431 -0.7994 14 1 7.7857 -1.5293 -1.0208 15 6 8.4787 -3.5877 -1.1540 16 6 9.7684 -3.2078 -1.4788 17 17 10.2052 -1.5276 -1.4775 18 6 10.7108 -4.1676 -1.8038 19 6 10.3627 -5.5049 -1.8042 20 6 9.0731 -5.8840 -1.4805 21 6 8.1329 -4.9261 -1.1502 22 6 6.8714 -2.7054 0.6154 23 16 2.5412 -1.4261 -0.0030 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6042 2.8202 1.0266 28 1 0.5311 2.2143 -1.6023 29 1 2.4074 5.0036 -0.8791 30 1 4.2569 3.5799 -0.1936 31 1 5.9754 -0.2620 0.0185 32 1 5.8635 -3.9232 -1.4836 33 1 5.7517 -2.2507 -2.1847 34 1 11.7179 -3.8715 -2.0580 35 1 11.0980 -6.2541 -2.0583 36 1 8.8015 -6.9293 -1.4813 37 1 7.1270 -5.2232 -0.8928 38 1 7.2484 -1.9725 1.3288 39 1 6.9177 -3.7267 0.9932 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10565094_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:16:20 Heat of formation + Delta-G solvation = 71.901436 kcal Electronic energy + Delta-G solvation = -23553.155270 eV Core-core repulsion = 20002.011034 eV Total energy + Delta-G solvation = -3551.144237 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.064 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48541 -40.94743 -39.42179 -37.73708 -37.43345 -35.37810 -32.74941 -31.67082 -31.59935 -29.20313 -26.77607 -26.32074 -25.54501 -24.39064 -23.68001 -22.77758 -20.81113 -20.35017 -18.84903 -18.35813 -17.87178 -17.38054 -16.85831 -16.63341 -16.35005 -16.21696 -15.67432 -15.53787 -15.12078 -14.85947 -14.78135 -14.52774 -14.33174 -14.05049 -13.79842 -13.53643 -13.42148 -13.29809 -12.96188 -12.81796 -12.63212 -12.52587 -12.38155 -12.17114 -12.05050 -11.85225 -11.53020 -11.36370 -10.94097 -10.62150 -10.34372 -10.03284 -9.84521 -9.59639 -8.63596 -4.98256 -0.01966 0.15601 0.17692 0.28594 0.75238 1.16042 1.29126 1.70679 1.83029 1.87810 2.10584 2.62802 3.33456 3.37280 3.53435 3.55216 3.59081 3.82992 3.92646 4.10201 4.13071 4.17614 4.33097 4.35263 4.40039 4.44629 4.50432 4.70564 4.73838 4.74276 4.85863 4.88833 4.91396 4.97939 5.01190 5.07789 5.18674 5.29994 5.37027 5.46317 5.49472 5.71456 5.87012 6.25686 6.67323 6.94557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.245 4.245 3 C 0.051 3.949 4 C -0.028 4.028 5 O -0.539 6.539 6 Si 0.787 3.213 7 N -0.575 5.575 8 C 0.310 3.690 9 N -0.675 5.675 10 C 0.126 3.874 11 H 0.107 0.893 12 C -0.137 4.137 13 C -0.081 4.081 14 H 0.094 0.906 15 C -0.069 4.069 16 C -0.053 4.053 17 Cl -0.081 7.081 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.123 4.123 23 S 0.130 5.870 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.395 0.605 29 H -0.293 1.293 30 H -0.304 1.304 31 H 0.412 0.588 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.075 0.925 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 -7.613 -2.235 7.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.368 4.368 3 C -0.078 4.078 4 C -0.141 4.141 5 O -0.345 6.345 6 Si 0.694 3.306 7 N -0.303 5.303 8 C -0.061 4.061 9 N -0.314 5.314 10 C 0.020 3.980 11 H 0.125 0.875 12 C -0.176 4.176 13 C -0.100 4.100 14 H 0.112 0.888 15 C -0.070 4.070 16 C -0.080 4.080 17 Cl -0.052 7.052 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.161 4.161 23 S 0.379 5.621 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.245 0.755 29 H -0.221 1.221 30 H -0.231 1.231 31 H 0.250 0.750 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.094 0.906 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.102 -7.433 -1.604 7.604 hybrid contribution 0.562 1.333 0.629 1.578 sum 0.461 -6.099 -0.975 6.194 Atomic orbital electron populations 1.20234 0.85282 1.02996 1.03668 1.25433 1.02216 0.93013 1.16178 1.20217 0.86676 0.97692 1.03260 1.24377 0.92806 0.95254 1.01711 1.86475 1.28103 1.89748 1.30215 0.93263 0.73996 0.74314 0.89060 1.65949 1.18066 1.17831 1.28449 1.23486 0.92620 0.91603 0.98412 1.43763 1.01299 1.06988 1.79355 1.22055 0.98898 0.78933 0.98073 0.87498 1.23663 0.93461 1.03367 0.97115 1.21670 0.93018 0.97717 0.97565 0.88779 1.19699 0.92309 0.95547 0.99447 1.21088 0.95631 0.85017 1.06228 1.98368 1.92904 1.16771 1.97198 1.21285 0.99563 0.92965 1.00385 1.21449 0.97766 0.95175 0.99216 1.21627 0.92973 1.01182 0.97442 1.21289 1.01234 0.90748 0.99304 1.23407 0.93036 1.04156 0.95529 1.83744 0.95259 1.09457 1.73617 0.89513 0.91783 0.89778 0.86969 0.75528 1.22109 1.23122 0.75029 0.86434 0.91082 0.84672 0.83417 0.83066 0.82652 0.90622 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.07 8.95 71.23 0.64 0.71 16 2 C -0.25 -0.66 6.50 24.57 0.16 -0.50 16 3 C 0.05 0.27 5.92 41.40 0.24 0.51 16 4 C -0.03 -0.09 2.82 71.24 0.20 0.11 16 5 O -0.54 -0.02 9.91 -148.98 -1.48 -1.50 16 6 Si 0.79 3.23 32.08 68.60 2.20 5.43 16 7 N -0.58 -4.39 8.95 -189.86 -1.70 -6.09 16 8 C 0.31 1.18 8.24 179.32 1.48 2.66 16 9 N -0.67 0.16 5.42 -327.90 -1.78 -1.62 16 10 C 0.13 -0.64 4.31 45.52 0.20 -0.44 16 11 H 0.11 -0.70 7.06 -2.39 -0.02 -0.72 16 12 C -0.14 0.79 7.25 31.12 0.23 1.01 16 13 C -0.08 0.27 3.64 -11.01 -0.04 0.23 16 14 H 0.09 -0.06 6.57 -2.38 -0.02 -0.07 16 15 C -0.07 0.10 5.29 -19.84 -0.11 -0.01 16 16 C -0.05 -0.10 6.31 22.32 0.14 0.04 16 17 Cl -0.08 -0.28 27.16 -2.72 -0.07 -0.35 16 18 C -0.12 -0.04 9.83 22.29 0.22 0.18 16 19 C -0.12 0.33 10.04 22.26 0.22 0.55 16 20 C -0.11 0.53 10.05 22.27 0.22 0.76 16 21 C -0.11 0.51 8.60 22.27 0.19 0.70 16 22 C -0.12 0.71 7.29 31.12 0.23 0.93 16 23 S 0.13 0.08 21.69 -56.49 -1.23 -1.15 16 24 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.08 0.06 6.63 -2.39 -0.02 0.04 16 27 H 0.11 0.51 7.96 -2.39 -0.02 0.49 16 28 H 0.39 -2.85 8.68 -74.06 -0.64 -3.49 16 29 H -0.29 -2.64 7.11 99.48 0.71 -1.94 16 30 H -0.30 -3.85 7.11 99.48 0.71 -3.14 16 31 H 0.41 0.07 8.83 -92.71 -0.82 -0.75 16 32 H 0.12 -1.09 6.32 -2.39 -0.02 -1.10 16 33 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 35 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 36 H 0.15 -1.40 8.06 -2.91 -0.02 -1.43 16 37 H 0.16 -1.55 6.67 -2.91 -0.02 -1.57 16 38 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.12 -1.00 7.72 -2.39 -0.02 -1.02 16 Total: 0.00 -14.67 347.67 -0.14 -14.81 By element: Atomic # 1 Polarization: -16.67 SS G_CDS: -0.32 Total: -16.99 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 4.22 Total: 7.46 kcal Atomic # 7 Polarization: -4.24 SS G_CDS: -3.48 Total: -7.71 kcal Atomic # 8 Polarization: -0.02 SS G_CDS: -1.48 Total: -1.50 kcal Atomic # 14 Polarization: 3.23 SS G_CDS: 2.20 Total: 5.43 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.23 Total: -1.15 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.07 Total: -0.35 kcal Total: -14.67 -0.14 -14.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10565094_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.714 kcal (2) G-P(sol) polarization free energy of solvation -14.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds