Wall clock time and date at job start Mon Mar 8 2021 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47134 * 2 1 4 4 C 1.50694 * 109.47730 * 120.00308 * 2 1 3 5 5 C 1.37990 * 120.33076 * 245.00195 * 4 2 1 6 6 N 1.32005 * 120.90348 * 180.02562 * 5 4 2 7 7 C 1.32333 * 121.64873 * 0.02562 * 6 5 4 8 8 N 1.39141 * 119.72206 * 179.97438 * 7 6 5 9 9 C 1.46507 * 119.99590 * 0.02562 * 8 7 6 10 10 H 1.08996 * 112.84917 * 336.18878 * 9 8 7 11 11 C 1.53949 * 113.61791 * 107.46593 * 9 8 7 12 12 C 1.53777 * 87.02049 * 89.19388 * 11 9 8 13 13 H 1.09000 * 113.62055 * 270.76791 * 12 11 9 14 14 C 1.50707 * 113.61282 * 139.95281 * 12 11 9 15 15 C 1.38325 * 120.00628 * 140.84295 * 14 12 11 16 16 Cl 1.73606 * 120.01335 * 0.02562 * 15 14 12 17 17 C 1.38369 * 119.97454 * 180.02562 * 15 14 12 18 18 C 1.38193 * 119.98692 * 359.97438 * 17 15 14 19 19 C 1.38270 * 120.01077 * 359.72637 * 18 17 15 20 20 C 1.38215 * 120.02537 * 0.55549 * 19 18 17 21 21 C 1.53781 * 87.17380 * 25.36438 * 12 11 9 22 22 C 1.39345 * 120.56225 * 0.25030 * 7 6 5 23 23 F 1.35101 * 120.47392 * 179.72623 * 22 7 6 24 24 C 1.38447 * 119.05650 * 359.49545 * 22 7 6 25 25 H 0.96698 * 113.99642 * 299.99932 * 1 2 3 26 26 H 1.09008 * 109.47127 * 240.00223 * 2 1 3 27 27 H 1.48497 * 110.00256 * 300.00237 * 3 2 1 28 28 H 1.48502 * 110.00018 * 61.32567 * 3 2 1 29 29 H 1.08001 * 119.54176 * 0.03767 * 5 4 2 30 30 H 0.96991 * 120.00528 * 179.97438 * 8 7 6 31 31 H 1.09003 * 113.66371 * 334.66799 * 11 9 8 32 32 H 1.08999 * 113.61492 * 203.72210 * 11 9 8 33 33 H 1.08003 * 120.00885 * 179.97438 * 17 15 14 34 34 H 1.08000 * 119.99879 * 180.02562 * 18 17 15 35 35 H 1.07997 * 119.98420 * 180.29209 * 19 18 17 36 36 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 37 37 H 1.08991 * 113.61621 * 89.15725 * 21 12 11 38 38 H 1.09006 * 113.61313 * 219.97756 * 21 12 11 39 39 H 1.07996 * 120.75675 * 180.24372 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 2.6383 -0.0202 2.1937 6 7 3.0841 -0.6313 3.2755 7 6 2.8742 -1.9217 3.4803 8 7 3.3628 -2.5254 4.6349 9 6 4.1055 -1.7326 5.6178 10 1 4.5630 -0.8428 5.1853 11 6 3.3162 -1.4556 6.9102 12 6 3.8994 -2.7708 7.4531 13 1 3.2902 -3.6455 7.2255 14 6 4.3018 -2.6994 8.9037 15 6 4.0691 -3.7764 9.7399 16 17 3.3142 -5.2110 9.1186 17 6 4.4383 -3.7100 11.0718 18 6 5.0397 -2.5680 11.5656 19 6 5.2777 -1.4941 10.7278 20 6 4.9038 -1.5577 9.3987 21 6 5.0707 -2.5652 6.4781 22 6 2.1730 -2.6825 2.5469 23 9 1.9645 -4.0009 2.7552 24 6 1.6888 -2.0669 1.4052 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8901 27 1 1.5614 2.4679 -1.2084 28 1 1.5880 2.4585 1.2243 29 1 2.8291 1.0345 2.0608 30 1 3.2110 -3.4708 4.7893 31 1 2.2347 -1.4800 6.7760 32 1 3.6570 -0.5714 7.4489 33 1 4.2566 -4.5504 11.7253 34 1 5.3284 -2.5160 12.6050 35 1 5.7520 -0.6036 11.1131 36 1 5.0858 -0.7169 8.7457 37 1 5.8921 -1.9851 6.8985 38 1 5.4046 -3.4845 5.9967 39 1 1.1384 -2.6294 0.6657 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10565094_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:16:23 Heat of formation + Delta-G solvation = 23.794587 kcal Electronic energy + Delta-G solvation = -25409.431178 eV Core-core repulsion = 21453.132268 eV Total energy + Delta-G solvation = -3956.298909 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.083 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.97463 -41.65559 -41.03780 -39.33419 -38.00637 -37.44248 -35.52339 -33.25233 -32.23131 -31.67706 -30.82461 -26.87389 -26.69151 -26.06789 -24.84008 -23.67434 -22.99377 -22.50037 -20.22779 -19.50850 -18.63289 -18.28412 -18.07693 -17.58237 -17.03823 -16.85508 -16.46237 -16.16082 -16.07724 -15.89232 -15.51009 -15.34745 -14.92702 -14.78941 -14.64184 -14.46811 -14.33783 -14.03635 -13.57266 -13.45184 -13.38516 -12.91388 -12.73013 -12.62096 -12.52935 -12.15278 -12.05704 -11.95150 -11.52825 -11.27766 -11.13163 -10.75326 -10.65317 -10.53439 -9.85262 -9.59975 -8.79015 -4.87452 -0.09240 0.09127 0.17212 0.28102 1.14959 1.32670 1.63777 1.92398 2.00890 2.51922 2.62550 3.01158 3.24360 3.42816 3.46675 3.59574 3.61714 3.69635 3.84683 3.87335 3.96157 3.98606 4.10229 4.17954 4.38636 4.39632 4.44296 4.52656 4.66709 4.72168 4.73119 4.76207 4.84156 4.94568 4.98636 4.99517 5.02182 5.15166 5.29430 5.41852 5.47902 5.51025 5.86315 5.99667 6.15987 6.50797 6.93170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.069 4.069 3 Si 0.768 3.232 4 C -0.202 4.202 5 C 0.147 3.853 6 N -0.522 5.522 7 C 0.385 3.615 8 N -0.699 5.699 9 C 0.137 3.863 10 H 0.111 0.889 11 C -0.137 4.137 12 C -0.081 4.081 13 H 0.092 0.908 14 C -0.070 4.070 15 C -0.054 4.054 16 Cl -0.081 7.081 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.126 4.126 22 C -0.039 4.039 23 F -0.143 7.143 24 C -0.040 4.040 25 H 0.386 0.614 26 H 0.128 0.872 27 H -0.302 1.302 28 H -0.274 1.274 29 H 0.184 0.816 30 H 0.413 0.587 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 3.837 1.533 5.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.179 4.179 3 Si 0.672 3.328 4 C -0.208 4.208 5 C -0.010 4.010 6 N -0.239 5.239 7 C 0.147 3.853 8 N -0.330 5.330 9 C 0.031 3.969 10 H 0.129 0.871 11 C -0.176 4.176 12 C -0.100 4.100 13 H 0.111 0.889 14 C -0.071 4.071 15 C -0.080 4.080 16 Cl -0.052 7.052 17 C -0.141 4.141 18 C -0.136 4.136 19 C -0.132 4.132 20 C -0.127 4.127 21 C -0.164 4.164 22 C -0.066 4.066 23 F -0.122 7.122 24 C -0.066 4.066 25 H 0.236 0.764 26 H 0.146 0.854 27 H -0.230 1.230 28 H -0.200 1.200 29 H 0.200 0.800 30 H 0.251 0.749 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.712 4.732 1.705 6.892 hybrid contribution -2.076 -1.924 0.058 2.831 sum 2.636 2.808 1.763 4.236 Atomic orbital electron populations 1.86588 1.18586 1.80386 1.50192 1.25071 0.83301 1.11837 0.97653 0.94112 0.90109 0.71592 0.76947 1.20908 1.05500 0.94084 1.00265 1.22765 0.90892 1.00384 0.86957 1.67351 1.25456 1.07111 1.23943 1.18529 0.90514 0.89203 0.87045 1.44327 1.58652 1.11895 1.18173 1.21852 0.92360 0.95299 0.87373 0.87096 1.23607 1.00137 0.97334 0.96522 1.21687 0.98836 0.99751 0.89707 0.88945 1.19737 0.98914 0.92939 0.95470 1.21083 1.02771 0.89269 0.94899 1.98363 1.80824 1.38345 1.87650 1.21288 0.99355 1.00030 0.93443 1.21454 0.98179 0.92533 1.01415 1.21622 0.98584 0.99478 0.93528 1.21271 0.97781 0.97299 0.96325 1.23414 0.96567 1.01071 0.95363 1.18171 1.09841 0.79293 0.99277 1.91466 1.93927 1.31686 1.95084 1.21447 0.95248 0.95004 0.94903 0.76427 0.85398 1.22988 1.20006 0.79955 0.74912 0.92232 0.87310 0.84530 0.83280 0.83065 0.82977 0.86948 0.90691 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.36 12.84 -148.98 -1.91 -2.27 16 2 C -0.07 0.21 2.82 71.23 0.20 0.41 16 3 Si 0.77 -3.64 29.91 68.60 2.05 -1.58 16 4 C -0.20 0.25 5.36 -19.76 -0.11 0.14 16 5 C 0.15 -0.18 9.84 84.61 0.83 0.65 16 6 N -0.52 -1.25 9.13 -193.03 -1.76 -3.01 16 7 C 0.39 1.29 7.49 133.09 1.00 2.28 16 8 N -0.70 -0.51 5.42 -321.50 -1.74 -2.25 16 9 C 0.14 -0.28 4.36 45.57 0.20 -0.08 16 10 H 0.11 -0.18 7.41 -2.39 -0.02 -0.19 16 11 C -0.14 0.28 7.27 31.18 0.23 0.51 16 12 C -0.08 0.09 3.65 -11.01 -0.04 0.05 16 13 H 0.09 0.11 6.55 -2.39 -0.02 0.10 16 14 C -0.07 -0.04 5.29 -19.84 -0.11 -0.14 16 15 C -0.05 -0.17 6.31 22.32 0.14 -0.03 16 16 Cl -0.08 -0.35 27.15 -2.72 -0.07 -0.42 16 17 C -0.12 -0.16 9.83 22.29 0.22 0.06 16 18 C -0.12 0.21 10.05 22.27 0.22 0.43 16 19 C -0.11 0.36 10.05 22.27 0.22 0.59 16 20 C -0.11 0.29 8.54 22.26 0.19 0.48 16 21 C -0.13 0.45 7.29 31.12 0.23 0.67 16 22 C -0.04 -0.16 7.35 22.59 0.17 0.01 16 23 F -0.14 -0.86 16.65 44.97 0.75 -0.11 16 24 C -0.04 -0.06 9.82 22.48 0.22 0.16 16 25 H 0.39 -1.85 8.70 -74.06 -0.64 -2.50 16 26 H 0.13 -0.60 7.96 -2.38 -0.02 -0.62 16 27 H -0.30 -1.05 7.11 99.48 0.71 -0.34 16 28 H -0.27 0.48 7.01 99.48 0.70 1.17 16 29 H 0.18 -1.12 4.84 -2.91 -0.01 -1.14 16 30 H 0.41 0.01 8.17 -92.71 -0.76 -0.74 16 31 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.11 -0.52 6.40 -2.39 -0.02 -0.54 16 33 H 0.14 -0.07 8.06 -2.91 -0.02 -0.10 16 34 H 0.15 -0.89 8.06 -2.91 -0.02 -0.91 16 35 H 0.15 -1.19 8.06 -2.91 -0.02 -1.22 16 36 H 0.15 -1.09 6.73 -2.91 -0.02 -1.11 16 37 H 0.11 -0.66 7.64 -2.39 -0.02 -0.68 16 38 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 39 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 Total: 0.00 -13.35 343.42 0.87 -12.47 By element: Atomic # 1 Polarization: -8.77 SS G_CDS: -0.25 Total: -9.02 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 3.81 Total: 6.19 kcal Atomic # 7 Polarization: -1.76 SS G_CDS: -3.50 Total: -5.26 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -1.91 Total: -2.27 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 0.75 Total: -0.11 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: 2.05 Total: -1.58 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.07 Total: -0.42 kcal Total: -13.35 0.87 -12.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10565094_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.268 kcal (2) G-P(sol) polarization free energy of solvation -13.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds