Wall clock time and date at job start Mon Mar 8 2021 06:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00047 * 2 1 4 4 C 1.38714 * 120.05555 * 180.29406 * 3 2 1 5 5 C 1.38163 * 119.94337 * 180.25983 * 4 3 2 6 6 C 1.50701 * 119.97119 * 179.75133 * 5 4 3 7 7 H 1.09002 * 112.85047 * 350.05480 * 6 5 4 8 8 C 1.53781 * 113.61772 * 121.25195 * 6 5 4 9 9 C 1.53777 * 87.08336 * 140.06093 * 8 6 5 10 10 H 1.08996 * 113.61474 * 220.01758 * 9 8 6 11 11 N 1.46499 * 113.61160 * 89.20358 * 9 8 6 12 12 C 1.38403 * 120.00073 * 154.99945 * 11 9 8 13 13 N 1.32494 * 119.21707 * 359.73104 * 12 11 9 14 14 C 1.32273 * 120.74001 * 179.71574 * 13 12 11 15 15 C 1.38613 * 119.19466 * 0.54753 * 14 13 12 16 16 C 1.50697 * 120.71828 * 179.71061 * 15 14 13 17 17 O 1.42907 * 109.47117 * 245.02040 * 16 15 14 18 18 Si 1.86300 * 109.47445 * 5.01484 * 16 15 14 19 19 C 1.38594 * 118.55990 * 359.72480 * 15 14 13 20 20 N 1.32282 * 119.20009 * 0.02562 * 19 15 14 21 21 C 1.53775 * 87.07992 * 334.56762 * 9 8 6 22 22 C 1.38243 * 120.05598 * 359.47049 * 5 4 3 23 23 C 1.38289 * 120.11272 * 0.23776 * 22 5 4 24 24 C 1.38128 * 120.05568 * 0.03737 * 23 22 5 25 25 H 1.08993 * 109.47293 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46854 * 299.99842 * 1 2 3 27 27 H 1.08997 * 109.47006 * 59.99261 * 1 2 3 28 28 H 1.08001 * 120.02551 * 359.97438 * 4 3 2 29 29 H 1.08997 * 113.61673 * 254.61641 * 8 6 5 30 30 H 1.09009 * 113.61202 * 25.42872 * 8 6 5 31 31 H 0.97006 * 119.99863 * 334.99879 * 11 9 8 32 32 H 1.07998 * 120.40487 * 180.29319 * 14 13 12 33 33 H 1.09000 * 109.47688 * 125.01581 * 16 15 14 34 34 H 0.96693 * 113.99794 * 59.99042 * 17 16 15 35 35 H 1.48502 * 110.00477 * 180.02562 * 18 16 15 36 36 H 1.48504 * 110.00222 * 301.32311 * 18 16 15 37 37 H 1.07999 * 120.40122 * 180.02562 * 19 15 14 38 38 H 1.08993 * 113.61636 * 270.87622 * 21 9 8 39 39 H 1.09008 * 113.61006 * 139.97865 * 21 9 8 40 40 H 1.08005 * 119.94500 * 180.25769 * 22 5 4 41 41 H 1.07996 * 119.97424 * 180.02562 * 23 22 5 42 42 H 1.07992 * 120.02826 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4312 1.2848 -0.0062 5 6 4.0560 2.5171 -0.0007 6 6 5.5609 2.5981 -0.0017 7 1 6.0369 1.6320 0.1666 8 6 6.1356 3.3670 -1.2031 9 6 7.1524 3.9787 -0.2249 10 1 7.3488 5.0358 -0.4037 11 7 8.3779 3.1886 -0.0823 12 6 9.5545 3.8016 0.3119 13 7 9.5562 5.1048 0.5510 14 6 10.6623 5.7203 0.9347 15 6 11.8304 4.9872 1.0744 16 6 13.1116 5.6547 1.5032 17 8 14.0641 5.5848 0.4401 18 14 12.7737 7.4393 1.9176 19 6 11.7944 3.6270 0.8109 20 7 10.6537 3.0722 0.4356 21 6 6.1196 3.7231 0.8853 22 6 3.3020 3.6757 -0.0002 23 6 1.9209 3.6048 -0.0002 24 6 1.2914 2.3753 0.0001 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 4.0206 0.3799 -0.0105 29 1 6.5881 2.7235 -1.9575 30 1 5.4436 4.0947 -1.6273 31 1 8.3646 2.2358 -0.2641 32 1 10.6565 6.7820 1.1327 33 1 13.5096 5.1468 2.3817 34 1 13.7759 6.0173 -0.3752 35 1 14.0295 8.1090 2.3414 36 1 12.2008 8.1352 0.7373 37 1 12.6870 3.0272 0.9106 38 1 5.4240 4.5491 1.0331 39 1 6.5593 3.3669 1.8170 40 1 3.7924 4.6381 -0.0001 41 1 1.3341 4.5114 -0.0002 42 1 0.2129 2.3204 -0.0002 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10812632_12175864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:12:45 Heat of formation + Delta-G solvation = 55.314041 kcal Electronic energy + Delta-G solvation = -24665.423529 eV Core-core repulsion = 21000.099452 eV Total energy + Delta-G solvation = -3665.324077 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16310 -41.39300 -40.30315 -38.31427 -37.88548 -35.43962 -34.72338 -32.54741 -31.80470 -30.78629 -28.24532 -26.92795 -26.65757 -26.07907 -25.36966 -23.60236 -23.25654 -22.27576 -20.35547 -19.60821 -18.85627 -18.34278 -18.06736 -17.23722 -16.92779 -16.68215 -16.57406 -16.38389 -16.25811 -16.01060 -15.67401 -15.44404 -15.16720 -14.58828 -14.42477 -14.32630 -14.07303 -13.97412 -13.51994 -13.29217 -13.23206 -13.12637 -12.67680 -12.30765 -12.24084 -12.19983 -11.91078 -11.74766 -11.69080 -11.61956 -11.26854 -11.12484 -10.67005 -10.04482 -9.75285 -9.18028 -9.08732 -4.89330 0.04778 0.14374 0.32819 0.47880 1.33177 1.61326 1.78597 1.99437 2.34700 2.73454 2.78191 3.15083 3.44080 3.49948 3.63856 3.69605 3.72351 3.76465 3.81412 3.87905 3.98821 4.10715 4.19404 4.23014 4.27507 4.33816 4.39193 4.54456 4.63233 4.64807 4.68024 4.69849 4.76782 4.80549 4.86853 5.00095 5.04575 5.10726 5.14811 5.34236 5.37138 5.50367 5.66881 5.80982 5.83432 6.04981 6.39655 6.43300 6.50323 7.26799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.109 3.891 4 C -0.170 4.170 5 C -0.033 4.033 6 C -0.072 4.072 7 H 0.097 0.903 8 C -0.126 4.126 9 C 0.137 3.863 10 H 0.106 0.894 11 N -0.675 5.675 12 C 0.555 3.445 13 N -0.574 5.574 14 C 0.193 3.807 15 C -0.284 4.284 16 C -0.057 4.057 17 O -0.547 6.547 18 Si 0.760 3.240 19 C 0.213 3.787 20 N -0.591 5.591 21 C -0.135 4.135 22 C -0.157 4.157 23 C -0.082 4.082 24 C -0.222 4.222 25 H 0.114 0.886 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.187 0.813 33 H 0.131 0.869 34 H 0.385 0.615 35 H -0.300 1.300 36 H -0.278 1.278 37 H 0.182 0.818 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 2.660 1.104 4.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.064 3.936 4 C -0.189 4.189 5 C -0.033 4.033 6 C -0.090 4.090 7 H 0.115 0.885 8 C -0.164 4.164 9 C 0.031 3.969 10 H 0.124 0.876 11 N -0.311 5.311 12 C 0.198 3.802 13 N -0.297 5.297 14 C 0.025 3.975 15 C -0.292 4.292 16 C -0.168 4.168 17 O -0.355 6.355 18 Si 0.665 3.335 19 C 0.045 3.955 20 N -0.314 5.314 21 C -0.174 4.174 22 C -0.175 4.175 23 C -0.100 4.100 24 C -0.241 4.241 25 H 0.133 0.867 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.203 0.797 33 H 0.149 0.851 34 H 0.234 0.766 35 H -0.228 1.228 36 H -0.204 1.204 37 H 0.199 0.801 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.884 2.605 1.030 4.789 hybrid contribution 0.814 -0.460 -0.943 1.328 sum -3.070 2.146 0.087 3.747 Atomic orbital electron populations 1.23292 0.76614 1.05366 1.02148 1.86041 1.23335 1.27411 1.88817 1.19290 0.92748 0.84716 0.96859 1.20504 0.91575 0.98868 1.07952 1.19617 0.95441 0.91916 0.96367 1.21602 0.89973 0.99436 0.97998 0.88469 1.23422 0.97166 0.99894 0.95964 1.21842 0.81968 0.96400 0.96653 0.87620 1.43914 1.04546 1.11276 1.71338 1.19596 0.86882 0.85790 0.87885 1.67961 1.31249 1.09277 1.21167 1.23235 0.86352 1.00601 0.87270 1.21684 0.98602 0.96940 1.11958 1.24868 0.86999 1.11967 0.92924 1.86591 1.44192 1.79764 1.24978 0.94240 0.82132 0.71908 0.85207 1.23155 0.94387 0.92397 0.85527 1.67999 0.99870 1.40686 1.22798 1.23562 0.97891 0.98605 0.97369 1.21184 0.93741 0.98733 1.03873 1.21272 0.95021 0.97532 0.96197 1.21496 1.00926 0.92409 1.09223 0.86738 0.91818 0.91790 0.85624 0.90394 0.87206 0.74465 0.79650 0.85118 0.76568 1.22811 1.20406 0.80059 0.87458 0.91875 0.83762 0.83616 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.16 10.50 -92.43 -0.97 -3.13 16 3 C 0.11 0.64 6.69 22.51 0.15 0.79 16 4 C -0.17 -0.86 9.65 22.37 0.22 -0.64 16 5 C -0.03 -0.05 5.29 -19.88 -0.11 -0.15 16 6 C -0.07 0.14 3.86 -11.01 -0.04 0.10 16 7 H 0.10 -0.17 8.09 -2.39 -0.02 -0.19 16 8 C -0.13 0.46 7.29 31.12 0.23 0.69 16 9 C 0.14 -0.23 4.33 45.51 0.20 -0.03 16 10 H 0.11 -0.03 7.36 -2.39 -0.02 -0.05 16 11 N -0.68 -0.84 5.41 -327.95 -1.78 -2.62 16 12 C 0.56 2.88 8.42 261.49 2.20 5.09 16 13 N -0.57 -2.37 9.13 -197.98 -1.81 -4.18 16 14 C 0.19 -0.01 9.92 84.72 0.84 0.83 16 15 C -0.28 0.23 5.36 -19.69 -0.11 0.12 16 16 C -0.06 0.19 2.83 71.24 0.20 0.39 16 17 O -0.55 -0.06 12.85 -148.98 -1.91 -1.97 16 18 Si 0.76 -3.34 29.95 68.60 2.05 -1.28 16 19 C 0.21 0.43 10.99 84.71 0.93 1.36 16 20 N -0.59 -3.49 10.46 -197.99 -2.07 -5.57 16 21 C -0.14 0.31 7.26 31.12 0.23 0.54 16 22 C -0.16 0.06 8.54 22.28 0.19 0.25 16 23 C -0.08 -0.01 10.04 22.26 0.22 0.21 16 24 C -0.22 -0.54 9.04 22.37 0.20 -0.34 16 25 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 27 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 28 H 0.13 0.54 8.05 -2.91 -0.02 0.52 16 29 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.11 -0.56 7.64 -2.38 -0.02 -0.57 16 31 H 0.42 -0.13 8.82 -92.70 -0.82 -0.95 16 32 H 0.19 -0.98 5.01 -2.91 -0.01 -0.99 16 33 H 0.13 -0.71 7.96 -2.39 -0.02 -0.73 16 34 H 0.39 -1.90 8.70 -74.06 -0.64 -2.54 16 35 H -0.30 -1.10 7.11 99.48 0.71 -0.40 16 36 H -0.28 0.29 7.02 99.48 0.70 0.99 16 37 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 38 H 0.11 -0.45 6.40 -2.39 -0.02 -0.47 16 39 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 40 H 0.14 -0.69 6.72 -2.91 -0.02 -0.71 16 41 H 0.15 -0.67 8.06 -2.91 -0.02 -0.69 16 42 H 0.14 -0.18 6.30 -2.91 -0.02 -0.20 16 Total: 0.00 -16.91 348.65 -0.18 -17.09 By element: Atomic # 1 Polarization: -8.26 SS G_CDS: -0.36 Total: -8.62 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 6.67 Total: 10.28 kcal Atomic # 7 Polarization: -6.71 SS G_CDS: -5.65 Total: -12.36 kcal Atomic # 8 Polarization: -2.22 SS G_CDS: -2.88 Total: -5.10 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.05 Total: -1.28 kcal Total: -16.91 -0.18 -17.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10812632_12175864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.400 kcal (2) G-P(sol) polarization free energy of solvation -16.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds