Wall clock time and date at job start Mon Mar 8 2021 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99702 * 2 1 4 4 C 1.38708 * 120.05650 * 180.25269 * 3 2 1 5 5 C 1.38169 * 119.94604 * 180.21448 * 4 3 2 6 6 C 1.50696 * 119.97603 * 179.79343 * 5 4 3 7 7 H 1.09006 * 112.85046 * 10.91818 * 6 5 4 8 8 C 1.53779 * 113.69216 * 142.18674 * 6 5 4 9 9 C 1.53784 * 87.08045 * 139.99356 * 8 6 5 10 10 H 1.09004 * 113.61451 * 220.02152 * 9 8 6 11 11 N 1.46496 * 113.61524 * 89.11591 * 9 8 6 12 12 C 1.39007 * 120.00091 * 107.50136 * 11 9 8 13 13 N 1.32391 * 119.70652 * 179.97438 * 12 11 9 14 14 C 1.31975 * 121.61916 * 179.97438 * 13 12 11 15 15 C 1.38013 * 120.85891 * 0.03178 * 14 13 12 16 16 C 1.50704 * 120.33468 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47492 * 119.99573 * 16 15 14 18 18 Si 1.86300 * 109.46934 * 359.97438 * 16 15 14 19 19 C 1.38889 * 119.33012 * 359.96870 * 15 14 13 20 20 C 1.38294 * 118.50315 * 359.73470 * 19 15 14 21 21 C 1.53779 * 113.61244 * 239.72529 * 6 5 4 22 22 C 1.38251 * 120.04909 * 359.51486 * 5 4 3 23 23 C 1.38285 * 120.11458 * 0.27979 * 22 5 4 24 24 C 1.38121 * 120.05536 * 359.95048 * 23 22 5 25 25 H 1.08991 * 109.47483 * 59.99909 * 1 2 3 26 26 H 1.09007 * 109.46477 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47334 * 299.99388 * 1 2 3 28 28 H 1.07998 * 120.02983 * 359.97438 * 4 3 2 29 29 H 1.09002 * 113.61557 * 25.44468 * 8 6 5 30 30 H 1.09004 * 113.61501 * 254.53888 * 8 6 5 31 31 H 0.96998 * 120.00377 * 287.50245 * 11 9 8 32 32 H 1.08006 * 119.56690 * 180.02562 * 14 13 12 33 33 H 1.08997 * 109.47049 * 239.99345 * 16 15 14 34 34 H 0.96704 * 113.99678 * 300.00220 * 17 16 15 35 35 H 1.48504 * 109.99759 * 180.02562 * 18 16 15 36 36 H 1.48493 * 109.99883 * 301.31675 * 18 16 15 37 37 H 1.07997 * 120.74577 * 180.02562 * 19 15 14 38 38 H 1.08005 * 120.45084 * 180.28158 * 20 19 15 39 39 H 1.08997 * 113.61646 * 105.38683 * 21 6 5 40 40 H 1.09000 * 113.61527 * 334.47954 * 21 6 5 41 41 H 1.08005 * 119.93921 * 180.24968 * 22 5 4 42 42 H 1.07999 * 119.97040 * 179.97438 * 23 22 5 43 43 H 1.07997 * 120.02742 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4310 1.2850 -0.0053 5 6 4.0558 2.5173 -0.0008 6 6 5.5606 2.5985 -0.0018 7 1 6.0363 1.6372 -0.1965 8 6 6.1169 3.7462 -0.8610 9 6 7.1528 3.9729 0.2528 10 1 7.3496 5.0252 0.4585 11 7 8.3769 3.1860 0.0848 12 6 9.5579 3.8111 -0.2984 13 7 10.6610 3.0944 -0.4480 14 6 11.8024 3.6488 -0.8109 15 6 11.8864 5.0057 -1.0482 16 6 13.1960 5.6265 -1.4614 17 8 13.0463 6.2482 -2.7393 18 14 14.5050 4.3047 -1.5629 19 6 10.7519 5.7935 -0.9023 20 6 9.5688 5.1836 -0.5271 21 6 6.1385 3.3360 1.2175 22 6 3.3016 3.6759 -0.0012 23 6 1.9206 3.6048 -0.0002 24 6 1.2912 2.3753 0.0001 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 4.0206 0.3802 -0.0090 29 1 5.4207 4.5757 -0.9853 30 1 6.5540 3.4144 -1.8028 31 1 8.3635 2.2288 0.2409 32 1 12.6821 3.0324 -0.9235 33 1 13.4917 6.3745 -0.7259 34 1 12.7836 5.6404 -3.4441 35 1 15.8016 4.9041 -1.9690 36 1 14.6479 3.6294 -0.2482 37 1 10.7916 6.8575 -1.0826 38 1 8.6665 5.7654 -0.4089 39 1 6.5931 2.6731 1.9537 40 1 5.4482 4.0533 1.6615 41 1 3.7919 4.6383 -0.0017 42 1 1.3337 4.5114 -0.0001 43 1 0.2127 2.3203 0.0005 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10812632_13915762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:12:48 Heat of formation + Delta-G solvation = 37.807206 kcal Electronic energy + Delta-G solvation = -24518.710909 eV Core-core repulsion = 20918.053589 eV Total energy + Delta-G solvation = -3600.657320 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70910 -41.18976 -40.22760 -38.22753 -37.69359 -35.23864 -33.39499 -32.24960 -31.39094 -30.56898 -28.25108 -26.74900 -26.65363 -25.62286 -24.69041 -23.58457 -22.87713 -22.06034 -20.18686 -19.14793 -18.44067 -18.39942 -17.36933 -17.23291 -16.92196 -16.68741 -16.49713 -16.30039 -16.02267 -15.99753 -15.34324 -15.20778 -14.94919 -14.43591 -14.41397 -14.22225 -14.00872 -13.98603 -13.47679 -13.37731 -13.23816 -13.18312 -12.67544 -12.37558 -12.24515 -12.17958 -12.10494 -11.67610 -11.61324 -11.25175 -11.01305 -10.73147 -10.40268 -10.37141 -9.75525 -9.16466 -8.67864 -4.98413 0.23554 0.32479 0.41753 0.47416 1.35195 1.64006 1.97567 2.07199 2.34336 2.73565 2.83913 3.47386 3.56352 3.62527 3.70414 3.72734 3.80261 3.87149 3.97524 4.00137 4.10100 4.10961 4.19230 4.26099 4.33181 4.37898 4.39038 4.50218 4.54849 4.61157 4.65277 4.69824 4.77594 4.81026 4.86315 4.99592 5.02899 5.06822 5.10951 5.20630 5.34020 5.35443 5.49799 5.57510 5.67580 5.83421 6.07317 6.42751 6.54434 6.80761 7.15482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.109 3.891 4 C -0.172 4.172 5 C -0.033 4.033 6 C -0.073 4.073 7 H 0.094 0.906 8 C -0.140 4.140 9 C 0.130 3.870 10 H 0.112 0.888 11 N -0.703 5.703 12 C 0.397 3.603 13 N -0.566 5.566 14 C 0.144 3.856 15 C -0.237 4.237 16 C -0.053 4.053 17 O -0.556 6.556 18 Si 0.764 3.236 19 C -0.012 4.012 20 C -0.240 4.240 21 C -0.127 4.127 22 C -0.157 4.157 23 C -0.083 4.083 24 C -0.223 4.223 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.406 0.594 32 H 0.166 0.834 33 H 0.108 0.892 34 H 0.394 0.606 35 H -0.296 1.296 36 H -0.288 1.288 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 1.546 -0.827 4.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.064 3.936 4 C -0.190 4.190 5 C -0.034 4.034 6 C -0.092 4.092 7 H 0.112 0.888 8 C -0.179 4.179 9 C 0.024 3.976 10 H 0.130 0.870 11 N -0.334 5.334 12 C 0.161 3.839 13 N -0.284 5.284 14 C -0.012 4.012 15 C -0.242 4.242 16 C -0.164 4.164 17 O -0.364 6.364 18 Si 0.670 3.330 19 C -0.038 4.038 20 C -0.264 4.264 21 C -0.165 4.165 22 C -0.175 4.175 23 C -0.100 4.100 24 C -0.241 4.241 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.242 0.758 32 H 0.183 0.817 33 H 0.125 0.875 34 H 0.244 0.756 35 H -0.224 1.224 36 H -0.215 1.215 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.582 0.809 -0.017 3.673 hybrid contribution -0.562 0.594 0.319 0.877 sum -4.144 1.403 0.302 4.386 Atomic orbital electron populations 1.23292 0.76612 1.05367 1.02143 1.86042 1.23341 1.27448 1.88818 1.19296 0.92758 0.84721 0.96859 1.20509 0.91569 0.98921 1.08037 1.19644 0.95553 0.91877 0.96286 1.21580 0.89821 0.99497 0.98253 0.88803 1.23643 0.98026 0.98580 0.97654 1.21946 0.82503 0.96477 0.96641 0.87040 1.44271 1.05152 1.10606 1.73383 1.18615 0.86426 0.89199 0.89637 1.67128 0.99371 1.40574 1.21325 1.22436 0.94379 0.92151 0.92261 1.21046 0.98023 0.95050 1.10091 1.24817 0.99712 1.04452 0.87415 1.86452 1.91962 1.40200 1.17762 0.93858 0.75300 0.79939 0.83857 1.21402 0.90835 1.00759 0.90807 1.21711 1.00945 0.93707 1.10062 1.23409 0.97265 0.99985 0.95873 1.21195 0.93678 0.98756 1.03871 1.21279 0.95098 0.97489 0.96174 1.21496 1.00915 0.92445 1.09268 0.91822 0.86748 0.91784 0.85783 0.87175 0.91553 0.75831 0.81746 0.87497 0.75615 1.22412 1.21474 0.83610 0.82922 0.90684 0.87128 0.83514 0.83597 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.11 10.50 -92.47 -0.97 -3.08 16 3 C 0.11 0.61 6.69 22.51 0.15 0.76 16 4 C -0.17 -0.81 9.65 22.37 0.22 -0.59 16 5 C -0.03 -0.02 5.29 -19.88 -0.11 -0.12 16 6 C -0.07 0.23 3.85 -11.02 -0.04 0.18 16 7 H 0.09 -0.20 8.09 -2.38 -0.02 -0.22 16 8 C -0.14 0.69 7.25 31.12 0.23 0.91 16 9 C 0.13 -0.67 4.11 45.52 0.19 -0.48 16 10 H 0.11 -0.81 6.11 -2.39 -0.01 -0.82 16 11 N -0.70 0.55 5.44 -322.03 -1.75 -1.20 16 12 C 0.40 1.24 7.65 133.07 1.02 2.26 16 13 N -0.57 -3.38 10.39 -193.26 -2.01 -5.39 16 14 C 0.14 0.40 9.84 84.62 0.83 1.24 16 15 C -0.24 -0.27 5.40 -19.76 -0.11 -0.38 16 16 C -0.05 0.02 2.84 71.24 0.20 0.22 16 17 O -0.56 -0.01 12.78 -148.98 -1.90 -1.91 16 18 Si 0.76 -1.00 29.82 68.60 2.05 1.05 16 19 C -0.01 -0.01 9.77 22.44 0.22 0.21 16 20 C -0.24 -0.10 9.28 22.50 0.21 0.11 16 21 C -0.13 0.68 7.29 31.12 0.23 0.90 16 22 C -0.16 0.23 8.61 22.28 0.19 0.43 16 23 C -0.08 0.05 10.04 22.25 0.22 0.27 16 24 C -0.22 -0.45 9.04 22.37 0.20 -0.25 16 25 H 0.06 -0.23 7.66 -2.39 -0.02 -0.24 16 26 H 0.11 -0.57 8.14 -2.38 -0.02 -0.59 16 27 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 28 H 0.12 0.53 8.05 -2.91 -0.02 0.51 16 29 H 0.11 -0.82 6.32 -2.39 -0.02 -0.83 16 30 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.41 -0.28 8.82 -92.71 -0.82 -1.10 16 32 H 0.17 -0.18 4.88 -2.91 -0.01 -0.19 16 33 H 0.11 0.05 7.96 -2.39 -0.02 0.03 16 34 H 0.39 -2.96 8.70 -74.05 -0.64 -3.61 16 35 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 36 H -0.29 -1.11 7.11 99.48 0.71 -0.40 16 37 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 38 H 0.15 -0.63 6.04 -2.91 -0.02 -0.65 16 39 H 0.07 -0.31 8.14 -2.39 -0.02 -0.32 16 40 H 0.11 -0.77 7.72 -2.39 -0.02 -0.79 16 41 H 0.15 -0.96 6.66 -2.91 -0.02 -0.98 16 42 H 0.15 -0.78 8.06 -2.91 -0.02 -0.80 16 43 H 0.14 -0.22 6.30 -2.91 -0.02 -0.24 16 Total: 0.00 -16.75 351.06 0.00 -16.75 By element: Atomic # 1 Polarization: -12.60 SS G_CDS: -0.37 Total: -12.97 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 4.96 Total: 6.75 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -3.76 Total: -6.58 kcal Atomic # 8 Polarization: -2.12 SS G_CDS: -2.87 Total: -4.99 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: 2.05 Total: 1.05 kcal Total: -16.75 0.00 -16.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10812632_13915762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.557 kcal (2) G-P(sol) polarization free energy of solvation -16.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds