Wall clock time and date at job start Mon Mar 8 2021 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99603 * 2 1 4 4 C 1.38716 * 120.05241 * 180.02562 * 3 2 1 5 5 C 1.38167 * 119.93997 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.96784 * 179.97438 * 5 4 3 7 7 H 1.09002 * 112.90791 * 11.24957 * 6 5 4 8 8 C 1.53779 * 113.61429 * 142.50284 * 6 5 4 9 9 C 1.53779 * 87.08402 * 139.98140 * 8 6 5 10 10 H 1.09000 * 113.69407 * 220.01236 * 9 8 6 11 11 N 1.46499 * 113.61746 * 89.11614 * 9 8 6 12 12 C 1.38603 * 119.99979 * 107.50464 * 11 9 8 13 13 N 1.29685 * 124.94952 * 359.69469 * 12 11 9 14 14 C 1.32122 * 116.86460 * 179.81687 * 13 12 11 15 15 C 1.33326 * 114.58048 * 0.47465 * 14 13 12 16 16 C 1.50699 * 125.95262 * 179.75870 * 15 14 13 17 17 O 1.42902 * 109.46982 * 300.01857 * 16 15 14 18 18 Si 1.86300 * 109.46991 * 180.02562 * 16 15 14 19 19 S 1.70968 * 124.94569 * 180.02562 * 12 11 9 20 20 C 1.53784 * 113.61308 * 239.99859 * 6 5 4 21 21 C 1.38241 * 120.05865 * 0.24831 * 5 4 3 22 22 C 1.38292 * 120.11010 * 359.49833 * 21 5 4 23 23 C 1.38120 * 120.05379 * 0.49982 * 22 21 5 24 24 H 1.08994 * 109.47324 * 60.00352 * 1 2 3 25 25 H 1.09004 * 109.46937 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47299 * 300.00166 * 1 2 3 27 27 H 1.07994 * 120.02927 * 0.03947 * 4 3 2 28 28 H 1.09006 * 113.61307 * 25.43343 * 8 6 5 29 29 H 1.08999 * 113.69146 * 254.53828 * 8 6 5 30 30 H 0.97001 * 119.99349 * 287.50724 * 11 9 8 31 31 H 1.08002 * 122.71164 * 180.23116 * 14 13 12 32 32 H 1.09000 * 109.47495 * 60.02008 * 16 15 14 33 33 H 0.96694 * 114.00244 * 180.02562 * 17 16 15 34 34 H 1.48494 * 110.00269 * 298.67754 * 18 16 15 35 35 H 1.48501 * 110.00016 * 60.00036 * 18 16 15 36 36 H 1.09004 * 113.61451 * 105.47354 * 20 6 5 37 37 H 1.08994 * 113.61477 * 334.56656 * 20 6 5 38 38 H 1.08002 * 119.94588 * 179.72116 * 21 5 4 39 39 H 1.08000 * 119.97203 * 180.23222 * 22 21 5 40 40 H 1.08007 * 120.02659 * 179.72784 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4311 1.2849 -0.0005 5 6 4.0559 2.5172 0.0000 6 6 5.5607 2.5983 0.0000 7 1 6.0373 1.6379 -0.1963 8 6 6.1156 3.7481 -0.8572 9 6 7.1513 3.9741 0.2568 10 1 7.3481 5.0258 0.4652 11 7 8.3764 3.1889 0.0874 12 6 9.5532 3.8142 -0.2937 13 7 9.6773 5.0833 -0.5301 14 6 10.8773 5.5108 -0.8804 15 6 11.8066 4.5575 -0.9523 16 6 13.2516 4.7571 -1.3305 17 8 13.3278 5.3027 -2.6491 18 14 14.1376 3.1189 -1.2843 19 16 11.0508 3.0236 -0.5282 20 6 6.1379 3.3344 1.2206 21 6 3.3018 3.6758 0.0063 22 6 1.9207 3.6047 0.0015 23 6 1.2913 2.3753 0.0009 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0206 0.3800 -0.0016 28 1 5.4185 4.5770 -0.9800 29 1 6.5532 3.4198 -1.8000 30 1 8.3639 2.2314 0.2418 31 1 11.0877 6.5481 -1.0953 32 1 13.7203 5.4437 -0.6256 33 1 14.2305 5.4574 -2.9592 34 1 14.0931 2.5560 0.0891 35 1 13.5082 2.1738 -2.2413 36 1 6.5933 2.6707 1.9556 37 1 5.4469 4.0502 1.6658 38 1 3.7921 4.6381 0.0112 39 1 1.3338 4.5114 0.0026 40 1 0.2127 2.3203 0.0017 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10812632_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:12:52 Heat of formation + Delta-G solvation = 42.772695 kcal Electronic energy + Delta-G solvation = -23072.794615 eV Core-core repulsion = 19561.504862 eV Total energy + Delta-G solvation = -3511.289753 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57656 -40.77136 -40.08323 -38.15545 -37.68902 -35.21404 -32.23701 -31.41963 -30.77848 -28.31504 -26.91387 -26.69888 -26.00274 -24.36718 -23.55818 -22.52474 -21.13603 -20.19018 -19.24017 -18.77418 -18.42798 -17.53518 -17.24212 -16.94133 -16.67861 -16.56927 -16.15713 -15.95386 -15.42943 -15.38293 -15.26146 -14.57622 -14.42622 -14.38800 -14.18990 -14.06142 -13.62226 -13.34816 -13.29412 -12.81573 -12.72966 -12.41703 -12.35273 -12.23019 -12.03812 -11.73351 -11.67326 -11.34233 -11.06394 -10.59341 -10.30466 -10.11997 -9.74305 -9.13204 -8.72334 -5.20498 -0.02894 0.10578 0.33760 0.50807 0.67697 1.24259 1.58981 1.94207 2.04825 2.09634 2.30976 2.74688 3.36484 3.45499 3.58979 3.62615 3.74541 3.82867 3.88747 3.98667 4.03753 4.13441 4.17647 4.19898 4.33979 4.42919 4.50005 4.54877 4.59877 4.60911 4.67206 4.72596 4.78689 4.90939 4.95979 5.02916 5.08424 5.26835 5.34961 5.49597 5.65936 5.79996 5.88020 6.04806 6.44252 6.60003 7.01821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.149 4.149 5 C -0.032 4.032 6 C -0.075 4.075 7 H 0.097 0.903 8 C -0.143 4.143 9 C 0.136 3.864 10 H 0.109 0.891 11 N -0.675 5.675 12 C 0.333 3.667 13 N -0.545 5.545 14 C 0.124 3.876 15 C -0.262 4.262 16 C -0.017 4.017 17 O -0.545 6.545 18 Si 0.667 3.333 19 S 0.069 5.931 20 C -0.135 4.135 21 C -0.154 4.154 22 C -0.076 4.076 23 C -0.212 4.212 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.129 0.871 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.414 0.586 31 H 0.179 0.821 32 H 0.082 0.918 33 H 0.383 0.617 34 H -0.242 1.242 35 H -0.239 1.239 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 0.091 0.933 1.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.168 4.168 5 C -0.032 4.032 6 C -0.093 4.093 7 H 0.116 0.884 8 C -0.183 4.183 9 C 0.028 3.972 10 H 0.127 0.873 11 N -0.313 5.313 12 C -0.038 4.038 13 N -0.270 5.270 14 C -0.027 4.027 15 C -0.384 4.384 16 C -0.130 4.130 17 O -0.352 6.352 18 Si 0.567 3.433 19 S 0.317 5.683 20 C -0.173 4.173 21 C -0.172 4.172 22 C -0.094 4.094 23 C -0.231 4.231 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.252 0.748 31 H 0.196 0.804 32 H 0.100 0.900 33 H 0.231 0.769 34 H -0.166 1.166 35 H -0.163 1.163 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.353 -1.605 1.300 2.096 hybrid contribution -0.685 0.868 -0.025 1.106 sum -0.332 -0.737 1.275 1.510 Atomic orbital electron populations 1.23086 0.78082 1.04200 1.01447 1.86080 1.21629 1.26901 1.88585 1.19034 0.92309 0.84268 0.95983 1.20304 0.91341 0.98200 1.06964 1.19431 0.94644 0.92180 0.96934 1.21620 0.90953 0.99196 0.97547 0.88438 1.23612 0.97991 0.98379 0.98272 1.21915 0.82371 0.96736 0.96201 0.87336 1.43725 1.04444 1.09635 1.73543 1.23763 0.91642 0.91768 0.96584 1.66463 1.24616 1.10724 1.25208 1.21347 0.85049 1.00804 0.95475 1.24284 1.00452 0.93538 1.20116 1.23673 0.93660 1.08615 0.87084 1.86514 1.32951 1.86080 1.29638 0.95169 0.89036 0.76373 0.82731 1.84102 1.02911 1.12164 1.69082 1.23467 0.97575 1.00062 0.96241 1.20920 0.93639 0.98141 1.04527 1.20949 0.94575 0.97069 0.96842 1.21272 1.00166 0.92456 1.09226 0.92535 0.88040 0.92541 0.85351 0.88373 0.90653 0.74829 0.80432 0.90034 0.76906 1.16613 1.16275 0.90414 0.87979 0.85664 0.85622 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.32 -0.86 10.50 -19.42 -0.20 -1.06 16 3 C 0.13 0.34 6.69 -39.22 -0.26 0.08 16 4 C -0.15 -0.31 9.65 -39.43 -0.38 -0.69 16 5 C -0.03 -0.03 5.29 -104.65 -0.55 -0.58 16 6 C -0.07 0.06 3.85 -90.96 -0.35 -0.29 16 7 H 0.10 -0.13 8.09 -51.93 -0.42 -0.55 16 8 C -0.14 0.05 7.25 -25.92 -0.19 -0.14 16 9 C 0.14 -0.03 4.44 -67.12 -0.30 -0.32 16 10 H 0.11 0.12 7.67 -51.93 -0.40 -0.28 16 11 N -0.67 -0.28 5.42 -54.99 -0.30 -0.58 16 12 C 0.33 0.98 8.09 -87.69 -0.71 0.27 16 13 N -0.54 -2.37 9.83 -15.21 -0.15 -2.52 16 14 C 0.12 0.44 11.22 -19.14 -0.21 0.22 16 15 C -0.26 -0.79 5.78 -36.02 -0.21 -1.00 16 16 C -0.02 0.00 2.98 36.00 0.11 0.10 16 17 O -0.55 -0.21 12.84 -35.23 -0.45 -0.66 16 18 Si 0.67 -0.35 31.05 -169.99 -5.28 -5.63 16 19 S 0.07 0.19 20.57 -107.50 -2.21 -2.02 16 20 C -0.14 0.19 7.29 -25.91 -0.19 0.00 16 21 C -0.15 -0.09 8.59 -39.56 -0.34 -0.43 16 22 C -0.08 -0.06 10.04 -39.60 -0.40 -0.45 16 23 C -0.21 -0.30 9.04 -39.44 -0.36 -0.66 16 24 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 25 H 0.10 -0.24 8.14 -51.93 -0.42 -0.67 16 26 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 27 H 0.13 0.16 8.05 -52.49 -0.42 -0.26 16 28 H 0.10 -0.08 6.32 -51.93 -0.33 -0.40 16 29 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.41 -0.63 8.82 -40.82 -0.36 -0.99 16 31 H 0.18 0.32 8.06 -52.49 -0.42 -0.11 16 32 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.38 -1.85 8.74 45.56 0.40 -1.45 16 34 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16 35 H -0.24 -0.66 7.11 56.52 0.40 -0.26 16 36 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 37 H 0.10 -0.17 7.71 -51.93 -0.40 -0.57 16 38 H 0.13 -0.13 6.67 -52.49 -0.35 -0.48 16 39 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 40 H 0.13 -0.04 6.30 -52.48 -0.33 -0.37 16 LS Contribution 346.65 15.07 5.22 5.22 Total: 0.00 -7.75 346.65 -11.85 -19.60 By element: Atomic # 1 Polarization: -4.30 SS G_CDS: -5.13 Total: -9.43 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.35 Total: -2.92 kcal Atomic # 7 Polarization: -2.65 SS G_CDS: -0.45 Total: -3.10 kcal Atomic # 8 Polarization: -1.07 SS G_CDS: -0.66 Total: -1.72 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -5.28 Total: -5.63 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.21 Total: -2.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -7.75 -11.85 -19.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10812632_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.370 kcal (2) G-P(sol) polarization free energy of solvation -7.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds