Wall clock time and date at job start Mon Mar 8 2021 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99603 * 2 1 4 4 C 1.38716 * 120.05241 * 180.02562 * 3 2 1 5 5 C 1.38167 * 119.93997 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.96784 * 179.97438 * 5 4 3 7 7 H 1.09002 * 112.90791 * 11.24957 * 6 5 4 8 8 C 1.53779 * 113.61429 * 142.50284 * 6 5 4 9 9 C 1.53779 * 87.08402 * 139.98140 * 8 6 5 10 10 H 1.09000 * 113.69407 * 220.01236 * 9 8 6 11 11 N 1.46499 * 113.61746 * 89.11614 * 9 8 6 12 12 C 1.38603 * 119.99979 * 107.50464 * 11 9 8 13 13 N 1.29685 * 124.94952 * 359.69469 * 12 11 9 14 14 C 1.32122 * 116.86460 * 179.81687 * 13 12 11 15 15 C 1.33326 * 114.58048 * 0.47465 * 14 13 12 16 16 C 1.50699 * 125.95262 * 179.75870 * 15 14 13 17 17 O 1.42902 * 109.46982 * 300.01857 * 16 15 14 18 18 Si 1.86300 * 109.46991 * 180.02562 * 16 15 14 19 19 S 1.70968 * 124.94569 * 180.02562 * 12 11 9 20 20 C 1.53784 * 113.61308 * 239.99859 * 6 5 4 21 21 C 1.38241 * 120.05865 * 0.24831 * 5 4 3 22 22 C 1.38292 * 120.11010 * 359.49833 * 21 5 4 23 23 C 1.38120 * 120.05379 * 0.49982 * 22 21 5 24 24 H 1.08994 * 109.47324 * 60.00352 * 1 2 3 25 25 H 1.09004 * 109.46937 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47299 * 300.00166 * 1 2 3 27 27 H 1.07994 * 120.02927 * 0.03947 * 4 3 2 28 28 H 1.09006 * 113.61307 * 25.43343 * 8 6 5 29 29 H 1.08999 * 113.69146 * 254.53828 * 8 6 5 30 30 H 0.97001 * 119.99349 * 287.50724 * 11 9 8 31 31 H 1.08002 * 122.71164 * 180.23116 * 14 13 12 32 32 H 1.09000 * 109.47495 * 60.02008 * 16 15 14 33 33 H 0.96694 * 114.00244 * 180.02562 * 17 16 15 34 34 H 1.48494 * 110.00269 * 298.67754 * 18 16 15 35 35 H 1.48501 * 110.00016 * 60.00036 * 18 16 15 36 36 H 1.09004 * 113.61451 * 105.47354 * 20 6 5 37 37 H 1.08994 * 113.61477 * 334.56656 * 20 6 5 38 38 H 1.08002 * 119.94588 * 179.72116 * 21 5 4 39 39 H 1.08000 * 119.97203 * 180.23222 * 22 21 5 40 40 H 1.08007 * 120.02659 * 179.72784 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4311 1.2849 -0.0005 5 6 4.0559 2.5172 0.0000 6 6 5.5607 2.5983 0.0000 7 1 6.0373 1.6379 -0.1963 8 6 6.1156 3.7481 -0.8572 9 6 7.1513 3.9741 0.2568 10 1 7.3481 5.0258 0.4652 11 7 8.3764 3.1889 0.0874 12 6 9.5532 3.8142 -0.2937 13 7 9.6773 5.0833 -0.5301 14 6 10.8773 5.5108 -0.8804 15 6 11.8066 4.5575 -0.9523 16 6 13.2516 4.7571 -1.3305 17 8 13.3278 5.3027 -2.6491 18 14 14.1376 3.1189 -1.2843 19 16 11.0508 3.0236 -0.5282 20 6 6.1379 3.3344 1.2206 21 6 3.3018 3.6758 0.0063 22 6 1.9207 3.6047 0.0015 23 6 1.2913 2.3753 0.0009 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0206 0.3800 -0.0016 28 1 5.4185 4.5770 -0.9800 29 1 6.5532 3.4198 -1.8000 30 1 8.3639 2.2314 0.2418 31 1 11.0877 6.5481 -1.0953 32 1 13.7203 5.4437 -0.6256 33 1 14.2305 5.4574 -2.9592 34 1 14.0931 2.5560 0.0891 35 1 13.5082 2.1738 -2.2413 36 1 6.5933 2.6707 1.9556 37 1 5.4469 4.0502 1.6658 38 1 3.7921 4.6381 0.0112 39 1 1.3338 4.5114 0.0026 40 1 0.2127 2.3203 0.0017 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10812632_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:12:51 Heat of formation + Delta-G solvation = 45.750390 kcal Electronic energy + Delta-G solvation = -23072.665493 eV Core-core repulsion = 19561.504862 eV Total energy + Delta-G solvation = -3511.160631 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60970 -40.88653 -40.16045 -38.19269 -37.68672 -35.28798 -32.28211 -31.50094 -30.83210 -28.27674 -26.97468 -26.68614 -26.05054 -24.47621 -23.60560 -22.56858 -21.21728 -20.28882 -19.33048 -18.80778 -18.40885 -17.64395 -17.27422 -16.96402 -16.70774 -16.60444 -16.21410 -16.05944 -15.52474 -15.44113 -15.29523 -14.66006 -14.45615 -14.43702 -14.25216 -14.07616 -13.58782 -13.33749 -13.26508 -12.90812 -12.72215 -12.55084 -12.33339 -12.27079 -12.12522 -11.74797 -11.67380 -11.33551 -11.13491 -10.76647 -10.42829 -10.22321 -9.79490 -9.19907 -8.85199 -5.19144 -0.20449 -0.06150 0.28632 0.43862 0.50217 1.24029 1.57133 1.85590 1.92747 2.02334 2.31527 2.69651 3.37316 3.49044 3.57608 3.63880 3.71433 3.83547 3.90911 3.97182 4.05832 4.14911 4.24156 4.31691 4.34668 4.49002 4.50058 4.56289 4.58915 4.64050 4.67756 4.73364 4.74840 4.91620 4.96662 5.00175 5.05352 5.21433 5.30253 5.46185 5.62157 5.78428 5.79382 6.02496 6.39912 6.84677 6.93069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.110 3.890 4 C -0.169 4.169 5 C -0.034 4.034 6 C -0.070 4.070 7 H 0.102 0.898 8 C -0.139 4.139 9 C 0.135 3.865 10 H 0.097 0.903 11 N -0.667 5.667 12 C 0.330 3.670 13 N -0.568 5.568 14 C 0.110 3.890 15 C -0.273 4.273 16 C -0.023 4.023 17 O -0.563 6.563 18 Si 0.755 3.245 19 S 0.053 5.947 20 C -0.123 4.123 21 C -0.159 4.159 22 C -0.082 4.082 23 C -0.221 4.221 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.064 0.936 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.423 0.577 31 H 0.190 0.810 32 H 0.107 0.893 33 H 0.405 0.595 34 H -0.273 1.273 35 H -0.287 1.287 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 0.830 1.169 2.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.065 3.935 4 C -0.187 4.187 5 C -0.034 4.034 6 C -0.088 4.088 7 H 0.120 0.880 8 C -0.178 4.178 9 C 0.027 3.973 10 H 0.115 0.885 11 N -0.306 5.306 12 C -0.041 4.041 13 N -0.294 5.294 14 C -0.040 4.040 15 C -0.396 4.396 16 C -0.136 4.136 17 O -0.374 6.374 18 Si 0.660 3.340 19 S 0.301 5.699 20 C -0.161 4.161 21 C -0.177 4.177 22 C -0.100 4.100 23 C -0.240 4.240 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.082 0.918 27 H 0.146 0.854 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.262 0.738 31 H 0.207 0.793 32 H 0.125 0.875 33 H 0.257 0.743 34 H -0.199 1.199 35 H -0.214 1.214 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.525 -0.851 1.534 1.831 hybrid contribution -0.772 0.605 -0.128 0.989 sum -0.247 -0.246 1.406 1.448 Atomic orbital electron populations 1.23300 0.76589 1.05402 1.02156 1.86041 1.23349 1.27316 1.88787 1.19283 0.92756 0.84720 0.96778 1.20496 0.91580 0.98811 1.07843 1.19591 0.95366 0.91940 0.96503 1.21604 0.90109 0.99337 0.97767 0.87998 1.23587 0.97938 0.98732 0.97588 1.21916 0.82209 0.96243 0.96890 0.88453 1.43819 1.03981 1.10143 1.72677 1.23933 0.92237 0.91606 0.96344 1.66473 1.25314 1.11382 1.26276 1.21591 0.85062 1.01541 0.95779 1.24662 1.01852 0.93088 1.19951 1.23836 0.92164 1.09769 0.87806 1.86461 1.35296 1.86049 1.29557 0.94219 0.87211 0.73921 0.78686 1.84127 1.03409 1.12858 1.69480 1.23411 0.96891 0.99922 0.95888 1.21176 0.93825 0.98707 1.04007 1.21263 0.94961 0.97595 0.96220 1.21498 1.00970 0.92369 1.09125 0.91850 0.86682 0.91755 0.85388 0.87758 0.91930 0.73799 0.79326 0.87538 0.74321 1.19936 1.21375 0.89757 0.87303 0.84080 0.83694 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.16 10.50 -92.39 -0.97 -3.13 16 3 C 0.11 0.67 6.69 22.51 0.15 0.82 16 4 C -0.17 -0.86 9.65 22.37 0.22 -0.64 16 5 C -0.03 -0.06 5.29 -19.88 -0.11 -0.17 16 6 C -0.07 0.11 3.85 -11.01 -0.04 0.07 16 7 H 0.10 -0.25 8.09 -2.39 -0.02 -0.27 16 8 C -0.14 0.07 7.25 31.12 0.23 0.30 16 9 C 0.13 -0.02 4.44 45.52 0.20 0.18 16 10 H 0.10 0.26 7.67 -2.39 -0.02 0.24 16 11 N -0.67 -0.90 5.42 -327.90 -1.78 -2.67 16 12 C 0.33 2.21 8.09 179.32 1.45 3.66 16 13 N -0.57 -5.40 9.83 -202.03 -1.99 -7.39 16 14 C 0.11 0.84 11.22 83.54 0.94 1.77 16 15 C -0.27 -1.75 5.78 24.57 0.14 -1.60 16 16 C -0.02 0.00 2.98 71.24 0.21 0.21 16 17 O -0.56 0.03 12.84 -148.98 -1.91 -1.89 16 18 Si 0.76 -0.78 31.05 68.60 2.13 1.35 16 19 S 0.05 0.35 20.57 -56.49 -1.16 -0.82 16 20 C -0.12 0.40 7.29 31.12 0.23 0.63 16 21 C -0.16 -0.11 8.59 22.28 0.19 0.08 16 22 C -0.08 -0.08 10.04 22.25 0.22 0.14 16 23 C -0.22 -0.64 9.04 22.36 0.20 -0.44 16 24 H 0.06 -0.20 7.66 -2.39 -0.02 -0.22 16 25 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 27 H 0.13 0.50 8.05 -2.91 -0.02 0.48 16 28 H 0.10 -0.19 6.32 -2.38 -0.02 -0.20 16 29 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.42 -1.13 8.82 -92.71 -0.82 -1.94 16 31 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.11 -0.52 7.96 -2.39 -0.02 -0.54 16 33 H 0.41 -4.47 8.74 -74.06 -0.65 -5.11 16 34 H -0.27 -1.09 7.11 99.48 0.71 -0.39 16 35 H -0.29 -1.97 7.11 99.48 0.71 -1.26 16 36 H 0.08 -0.35 8.14 -2.39 -0.02 -0.36 16 37 H 0.11 -0.45 7.71 -2.39 -0.02 -0.47 16 38 H 0.14 -0.44 6.67 -2.91 -0.02 -0.46 16 39 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 40 H 0.14 -0.13 6.30 -2.91 -0.02 -0.15 16 Total: 0.00 -18.93 346.65 -0.68 -19.61 By element: Atomic # 1 Polarization: -10.81 SS G_CDS: -0.34 Total: -11.16 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.34 Total: 6.09 kcal Atomic # 7 Polarization: -6.30 SS G_CDS: -3.76 Total: -10.06 kcal Atomic # 8 Polarization: -2.13 SS G_CDS: -2.88 Total: -5.01 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.13 Total: 1.35 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.16 Total: -0.82 kcal Total: -18.93 -0.68 -19.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10812632_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.362 kcal (2) G-P(sol) polarization free energy of solvation -18.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds