Wall clock time and date at job start Mon Mar 8 2021 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35906 * 117.00447 * 2 1 4 4 C 1.38711 * 120.04992 * 0.02562 * 3 2 1 5 5 C 1.38169 * 119.94094 * 180.02562 * 4 3 2 6 6 C 1.38242 * 120.05494 * 0.03192 * 5 4 3 7 7 C 1.38295 * 120.11401 * 359.94904 * 6 5 4 8 8 C 1.50694 * 119.97322 * 179.74918 * 7 6 5 9 9 H 1.09003 * 112.84976 * 189.66762 * 8 7 6 10 10 C 1.53785 * 113.61578 * 320.86494 * 8 7 6 11 11 C 1.53953 * 87.02275 * 139.95120 * 10 8 7 12 12 H 1.08994 * 113.66890 * 220.07243 * 11 10 8 13 13 N 1.46503 * 113.61630 * 89.19493 * 11 10 8 14 14 C 1.38605 * 119.99986 * 107.46739 * 13 11 10 15 15 N 1.29684 * 124.95148 * 179.72754 * 14 13 11 16 16 C 1.32127 * 116.86398 * 179.81550 * 15 14 13 17 17 C 1.50701 * 122.70775 * 180.22567 * 16 15 14 18 18 O 1.42895 * 109.46995 * 150.26454 * 17 16 15 19 19 Si 1.86301 * 109.47147 * 30.26224 * 17 16 15 20 20 C 1.33323 * 114.57935 * 0.46608 * 16 15 14 21 21 C 1.50705 * 125.94862 * 179.75246 * 20 16 15 22 22 S 1.70967 * 124.94678 * 0.02562 * 14 13 11 23 23 C 1.53784 * 113.61416 * 58.47135 * 8 7 6 24 24 C 1.38122 * 120.05026 * 0.02562 * 7 6 5 25 25 H 1.09010 * 109.46531 * 300.00160 * 1 2 3 26 26 H 1.09000 * 109.47346 * 59.99593 * 1 2 3 27 27 H 1.08993 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.03173 * 0.04964 * 4 3 2 29 29 H 1.07998 * 119.97347 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.94707 * 179.97438 * 6 5 4 31 31 H 1.08998 * 113.60995 * 254.52726 * 10 8 7 32 32 H 1.08999 * 113.61192 * 25.42868 * 10 8 7 33 33 H 0.97005 * 120.00225 * 287.47377 * 13 11 10 34 34 H 1.09004 * 109.46952 * 270.26279 * 17 16 15 35 35 H 0.96698 * 114.00557 * 299.99473 * 18 17 16 36 36 H 1.48501 * 110.00126 * 58.68520 * 19 17 16 37 37 H 1.48506 * 110.00007 * 180.02562 * 19 17 16 38 38 H 1.09002 * 109.46927 * 180.02562 * 21 20 16 39 39 H 1.09000 * 109.46799 * 300.02528 * 21 20 16 40 40 H 1.08993 * 109.47092 * 60.02790 * 21 20 16 41 41 H 1.09001 * 113.61523 * 334.56583 * 23 8 7 42 42 H 1.09001 * 113.61355 * 105.38710 * 23 8 7 43 43 H 1.08002 * 120.02294 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2917 2.3749 0.0005 5 6 1.9214 3.6048 0.0000 6 6 3.3020 3.6757 -0.0017 7 6 4.0563 2.5166 -0.0019 8 6 5.5611 2.5976 -0.0095 9 1 6.0362 1.6311 -0.1775 10 6 6.1131 3.7194 -0.9050 11 6 7.1525 3.9806 0.2003 12 1 7.3487 5.0384 0.3753 13 7 8.3779 3.1915 0.0519 14 6 9.5530 3.8057 -0.3517 15 7 10.6904 3.2028 -0.5089 16 6 11.7099 3.9447 -0.9038 17 6 13.0881 3.3795 -1.1322 18 8 13.7527 4.1391 -2.1438 19 14 12.9484 1.6043 -1.6797 20 6 11.4220 5.2346 -1.0791 21 6 12.3878 6.3050 -1.5181 22 16 9.7160 5.4698 -0.7081 23 6 6.1424 3.3702 1.1864 24 6 3.4315 1.2848 -0.0008 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2131 2.3200 0.0018 29 1 1.3346 4.5114 0.0000 30 1 3.7924 4.6379 -0.0026 31 1 6.5474 3.3596 -1.8377 32 1 5.4155 4.5439 -1.0520 33 1 8.3668 2.2392 0.2361 34 1 13.6597 3.4301 -0.2055 35 1 13.2992 4.1387 -2.9978 36 1 12.1443 1.5186 -2.9252 37 1 14.3010 1.0351 -1.9077 38 1 11.8689 7.2620 -1.5733 39 1 13.2039 6.3750 -0.7989 40 1 12.7889 6.0521 -2.4994 41 1 5.4529 4.0991 1.6122 42 1 6.5991 2.7288 1.9402 43 1 4.0211 0.3799 -0.0013 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10812632_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:12:55 Heat of formation + Delta-G solvation = 36.217484 kcal Electronic energy + Delta-G solvation = -25171.728849 eV Core-core repulsion = 21504.617221 eV Total energy + Delta-G solvation = -3667.111628 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62645 -40.98653 -40.38706 -38.27590 -37.68573 -35.28302 -32.70977 -32.01570 -30.95761 -29.17405 -28.33166 -26.91466 -26.20489 -25.46834 -24.31197 -23.58137 -22.60275 -20.85017 -20.44167 -19.03048 -18.64136 -17.87608 -17.45790 -17.27316 -16.97326 -16.70176 -16.63381 -16.44245 -16.02158 -15.63260 -15.41204 -15.23700 -14.51454 -14.48112 -14.24487 -14.10526 -13.96395 -13.74236 -13.64987 -13.45494 -13.34458 -13.30123 -12.82216 -12.70117 -12.39153 -12.35611 -12.18281 -11.79204 -11.74684 -11.70304 -11.49580 -10.93384 -10.57265 -10.46750 -9.97451 -9.78290 -9.16625 -8.60123 -4.64460 0.04558 0.20500 0.29721 0.47124 0.80999 1.41141 1.82281 1.85758 1.98501 2.14276 2.28504 2.70291 3.23496 3.31520 3.42807 3.55160 3.57724 3.75336 3.82198 3.95299 4.07892 4.14200 4.17187 4.18131 4.26271 4.31881 4.36235 4.48660 4.50428 4.54406 4.56490 4.61941 4.65338 4.80961 4.83334 4.85012 4.90676 4.97282 5.05137 5.12520 5.31429 5.31732 5.45289 5.59056 5.66500 5.76376 6.26142 6.40358 6.41561 6.97578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.130 3.870 4 C -0.212 4.212 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.033 4.033 8 C -0.072 4.072 9 H 0.101 0.899 10 C -0.147 4.147 11 C 0.125 3.875 12 H 0.097 0.903 13 N -0.676 5.676 14 C 0.322 3.678 15 N -0.538 5.538 16 C 0.067 3.933 17 C -0.042 4.042 18 O -0.526 6.526 19 Si 0.721 3.279 20 C -0.243 4.243 21 C -0.060 4.060 22 S 0.102 5.898 23 C -0.131 4.131 24 C -0.148 4.148 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.414 0.586 34 H 0.124 0.876 35 H 0.375 0.625 36 H -0.268 1.268 37 H -0.261 1.261 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 1.445 1.360 5.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.085 3.915 4 C -0.231 4.231 5 C -0.095 4.095 6 C -0.173 4.173 7 C -0.033 4.033 8 C -0.091 4.091 9 H 0.119 0.881 10 C -0.186 4.186 11 C 0.018 3.982 12 H 0.115 0.885 13 N -0.316 5.316 14 C -0.049 4.049 15 N -0.264 5.264 16 C -0.063 4.063 17 C -0.154 4.154 18 O -0.331 6.331 19 Si 0.622 3.378 20 C -0.365 4.365 21 C -0.119 4.119 22 S 0.352 5.648 23 C -0.169 4.169 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.253 0.747 34 H 0.141 0.859 35 H 0.223 0.777 36 H -0.192 1.192 37 H -0.186 1.186 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.960 1.177 1.342 5.271 hybrid contribution 0.147 0.183 -0.819 0.852 sum -4.813 1.360 0.523 5.029 Atomic orbital electron populations 1.23090 0.78057 1.04234 1.01438 1.86084 1.21641 1.26878 1.88540 1.19043 0.92328 0.84286 0.95883 1.21280 1.00197 0.92465 1.09153 1.20943 0.94580 0.97066 0.96866 1.20894 0.93650 0.98047 1.04709 1.19414 0.94570 0.92197 0.97120 1.21584 0.91016 0.99312 0.97141 0.88071 1.23710 0.97811 0.98955 0.98121 1.22016 0.83078 0.95485 0.97591 0.88469 1.43580 1.03763 1.11220 1.73030 1.23237 0.89951 0.93785 0.97967 1.65724 0.97699 1.37232 1.25775 1.20065 0.95634 0.89539 1.01069 1.24463 0.88621 1.06880 0.95428 1.86620 1.51467 1.72321 1.22714 0.93621 0.79921 0.77915 0.86359 1.25145 0.96790 0.98798 1.15805 1.20140 0.95780 0.93794 1.02166 1.83974 1.07371 1.06230 1.67273 1.23423 0.97087 1.00048 0.96369 1.20316 0.91343 0.98256 1.06742 0.92533 0.92539 0.88016 0.85473 0.85640 0.85746 0.90235 0.88167 0.74709 0.85854 0.77677 1.19231 1.18639 0.92300 0.90559 0.90235 0.87832 0.89907 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.96 16 2 O -0.32 -0.67 10.50 -19.44 -0.20 -0.87 16 3 C 0.13 0.25 6.69 -39.22 -0.26 -0.02 16 4 C -0.21 -0.14 9.04 -39.43 -0.36 -0.49 16 5 C -0.08 0.02 10.04 -39.61 -0.40 -0.38 16 6 C -0.15 0.10 8.53 -39.56 -0.34 -0.24 16 7 C -0.03 0.01 5.29 -104.65 -0.55 -0.54 16 8 C -0.07 0.16 3.85 -90.96 -0.35 -0.19 16 9 H 0.10 -0.24 8.08 -51.93 -0.42 -0.66 16 10 C -0.15 0.35 7.27 -25.83 -0.19 0.17 16 11 C 0.12 -0.30 4.32 -67.02 -0.29 -0.59 16 12 H 0.10 -0.25 7.06 -51.93 -0.37 -0.61 16 13 N -0.68 0.64 5.42 -54.90 -0.30 0.35 16 14 C 0.32 0.45 8.24 -87.69 -0.72 -0.27 16 15 N -0.54 -1.46 8.95 -11.36 -0.10 -1.56 16 16 C 0.07 0.16 5.91 -84.18 -0.50 -0.33 16 17 C -0.04 -0.06 2.94 36.01 0.11 0.05 16 18 O -0.53 -0.69 10.17 -35.23 -0.36 -1.04 16 19 Si 0.72 1.05 32.09 -169.99 -5.45 -4.40 16 20 C -0.24 -0.45 6.50 -36.02 -0.23 -0.69 16 21 C -0.06 -0.02 8.91 36.01 0.32 0.30 16 22 S 0.10 0.08 21.69 -107.50 -2.33 -2.25 16 23 C -0.13 0.40 7.29 -25.91 -0.19 0.21 16 24 C -0.15 -0.18 9.65 -39.44 -0.38 -0.56 16 25 H 0.06 -0.12 7.66 -51.92 -0.40 -0.52 16 26 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 27 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 28 H 0.13 -0.13 6.30 -52.49 -0.33 -0.46 16 29 H 0.13 -0.26 8.06 -52.49 -0.42 -0.68 16 30 H 0.12 -0.32 6.72 -52.49 -0.35 -0.67 16 31 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 32 H 0.10 -0.31 6.40 -51.93 -0.33 -0.64 16 33 H 0.41 -0.72 8.83 -40.82 -0.36 -1.08 16 34 H 0.12 0.09 7.96 -51.93 -0.41 -0.33 16 35 H 0.38 -0.41 8.13 45.56 0.37 -0.04 16 36 H -0.27 -1.13 7.11 56.52 0.40 -0.72 16 37 H -0.26 -0.97 7.11 56.52 0.40 -0.57 16 38 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 39 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 40 H 0.08 -0.03 6.40 -51.93 -0.33 -0.36 16 41 H 0.10 -0.35 7.63 -51.93 -0.40 -0.75 16 42 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 43 H 0.13 0.06 8.05 -52.49 -0.42 -0.36 16 LS Contribution 362.95 15.07 5.47 5.47 Total: 0.00 -6.13 362.95 -12.50 -18.64 By element: Atomic # 1 Polarization: -5.80 SS G_CDS: -5.89 Total: -11.69 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.34 Total: -2.64 kcal Atomic # 7 Polarization: -0.81 SS G_CDS: -0.40 Total: -1.21 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -0.56 Total: -1.92 kcal Atomic # 14 Polarization: 1.05 SS G_CDS: -5.45 Total: -4.40 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.33 Total: -2.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -6.13 -12.50 -18.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10812632_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.855 kcal (2) G-P(sol) polarization free energy of solvation -6.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds