Wall clock time and date at job start Mon Mar 8 2021 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35906 * 117.00447 * 2 1 4 4 C 1.38711 * 120.04992 * 0.02562 * 3 2 1 5 5 C 1.38169 * 119.94094 * 180.02562 * 4 3 2 6 6 C 1.38242 * 120.05494 * 0.03192 * 5 4 3 7 7 C 1.38295 * 120.11401 * 359.94904 * 6 5 4 8 8 C 1.50694 * 119.97322 * 179.74918 * 7 6 5 9 9 H 1.09003 * 112.84976 * 189.66762 * 8 7 6 10 10 C 1.53785 * 113.61578 * 320.86494 * 8 7 6 11 11 C 1.53953 * 87.02275 * 139.95120 * 10 8 7 12 12 H 1.08994 * 113.66890 * 220.07243 * 11 10 8 13 13 N 1.46503 * 113.61630 * 89.19493 * 11 10 8 14 14 C 1.38605 * 119.99986 * 107.46739 * 13 11 10 15 15 N 1.29684 * 124.95148 * 179.72754 * 14 13 11 16 16 C 1.32127 * 116.86398 * 179.81550 * 15 14 13 17 17 C 1.50701 * 122.70775 * 180.22567 * 16 15 14 18 18 O 1.42895 * 109.46995 * 150.26454 * 17 16 15 19 19 Si 1.86301 * 109.47147 * 30.26224 * 17 16 15 20 20 C 1.33323 * 114.57935 * 0.46608 * 16 15 14 21 21 C 1.50705 * 125.94862 * 179.75246 * 20 16 15 22 22 S 1.70967 * 124.94678 * 0.02562 * 14 13 11 23 23 C 1.53784 * 113.61416 * 58.47135 * 8 7 6 24 24 C 1.38122 * 120.05026 * 0.02562 * 7 6 5 25 25 H 1.09010 * 109.46531 * 300.00160 * 1 2 3 26 26 H 1.09000 * 109.47346 * 59.99593 * 1 2 3 27 27 H 1.08993 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.03173 * 0.04964 * 4 3 2 29 29 H 1.07998 * 119.97347 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.94707 * 179.97438 * 6 5 4 31 31 H 1.08998 * 113.60995 * 254.52726 * 10 8 7 32 32 H 1.08999 * 113.61192 * 25.42868 * 10 8 7 33 33 H 0.97005 * 120.00225 * 287.47377 * 13 11 10 34 34 H 1.09004 * 109.46952 * 270.26279 * 17 16 15 35 35 H 0.96698 * 114.00557 * 299.99473 * 18 17 16 36 36 H 1.48501 * 110.00126 * 58.68520 * 19 17 16 37 37 H 1.48506 * 110.00007 * 180.02562 * 19 17 16 38 38 H 1.09002 * 109.46927 * 180.02562 * 21 20 16 39 39 H 1.09000 * 109.46799 * 300.02528 * 21 20 16 40 40 H 1.08993 * 109.47092 * 60.02790 * 21 20 16 41 41 H 1.09001 * 113.61523 * 334.56583 * 23 8 7 42 42 H 1.09001 * 113.61355 * 105.38710 * 23 8 7 43 43 H 1.08002 * 120.02294 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2917 2.3749 0.0005 5 6 1.9214 3.6048 0.0000 6 6 3.3020 3.6757 -0.0017 7 6 4.0563 2.5166 -0.0019 8 6 5.5611 2.5976 -0.0095 9 1 6.0362 1.6311 -0.1775 10 6 6.1131 3.7194 -0.9050 11 6 7.1525 3.9806 0.2003 12 1 7.3487 5.0384 0.3753 13 7 8.3779 3.1915 0.0519 14 6 9.5530 3.8057 -0.3517 15 7 10.6904 3.2028 -0.5089 16 6 11.7099 3.9447 -0.9038 17 6 13.0881 3.3795 -1.1322 18 8 13.7527 4.1391 -2.1438 19 14 12.9484 1.6043 -1.6797 20 6 11.4220 5.2346 -1.0791 21 6 12.3878 6.3050 -1.5181 22 16 9.7160 5.4698 -0.7081 23 6 6.1424 3.3702 1.1864 24 6 3.4315 1.2848 -0.0008 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2131 2.3200 0.0018 29 1 1.3346 4.5114 0.0000 30 1 3.7924 4.6379 -0.0026 31 1 6.5474 3.3596 -1.8377 32 1 5.4155 4.5439 -1.0520 33 1 8.3668 2.2392 0.2361 34 1 13.6597 3.4301 -0.2055 35 1 13.2992 4.1387 -2.9978 36 1 12.1443 1.5186 -2.9252 37 1 14.3010 1.0351 -1.9077 38 1 11.8689 7.2620 -1.5733 39 1 13.2039 6.3750 -0.7989 40 1 12.7889 6.0521 -2.4994 41 1 5.4529 4.0991 1.6122 42 1 6.5991 2.7288 1.9402 43 1 4.0211 0.3799 -0.0013 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10812632_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:12:54 Heat of formation + Delta-G solvation = 42.342425 kcal Electronic energy + Delta-G solvation = -25171.463251 eV Core-core repulsion = 21504.617221 eV Total energy + Delta-G solvation = -3666.846030 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.54714 -41.04259 -40.33335 -38.26780 -37.73123 -35.25741 -32.71661 -31.98356 -30.91531 -29.23543 -28.24079 -26.71274 -26.13253 -25.49677 -24.34192 -23.55068 -22.53052 -20.85803 -20.39043 -19.02063 -18.61654 -17.95359 -17.45014 -17.23335 -16.90346 -16.69771 -16.67256 -16.38222 -15.95438 -15.72345 -15.39085 -15.19694 -14.45836 -14.40160 -14.27596 -14.14994 -13.93754 -13.82236 -13.53082 -13.41304 -13.25011 -13.22743 -12.80978 -12.67555 -12.47575 -12.27193 -12.16591 -11.95487 -11.65625 -11.61545 -11.34669 -10.90296 -10.65801 -10.54681 -10.03793 -9.75049 -9.15744 -8.62022 -4.79348 -0.02765 0.16066 0.32902 0.48145 0.73810 1.28907 1.66138 1.81965 1.89559 1.99291 2.34915 2.73987 3.28386 3.41206 3.49697 3.60777 3.70620 3.87557 3.94574 4.08098 4.14594 4.19024 4.26578 4.32672 4.33470 4.38643 4.42956 4.54992 4.56891 4.62860 4.69880 4.78396 4.79956 4.81704 4.88868 4.97756 5.03063 5.05042 5.09544 5.19577 5.30515 5.34759 5.50360 5.64168 5.75054 5.83852 6.29988 6.43128 6.43479 6.92465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.108 3.892 4 C -0.223 4.223 5 C -0.083 4.083 6 C -0.157 4.157 7 C -0.033 4.033 8 C -0.072 4.072 9 H 0.100 0.900 10 C -0.141 4.141 11 C 0.125 3.875 12 H 0.103 0.897 13 N -0.670 5.670 14 C 0.313 3.687 15 N -0.559 5.559 16 C 0.055 3.945 17 C -0.040 4.040 18 O -0.532 6.532 19 Si 0.780 3.220 20 C -0.257 4.257 21 C -0.057 4.057 22 S 0.123 5.877 23 C -0.121 4.121 24 C -0.170 4.170 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.417 0.583 34 H 0.131 0.869 35 H 0.385 0.615 36 H -0.305 1.305 37 H -0.292 1.292 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 2.758 1.809 6.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.063 3.937 4 C -0.241 4.241 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.033 4.033 8 C -0.090 4.090 9 H 0.118 0.882 10 C -0.180 4.180 11 C 0.019 3.981 12 H 0.121 0.879 13 N -0.310 5.310 14 C -0.059 4.059 15 N -0.286 5.286 16 C -0.076 4.076 17 C -0.152 4.152 18 O -0.339 6.339 19 Si 0.686 3.314 20 C -0.380 4.380 21 C -0.117 4.117 22 S 0.372 5.628 23 C -0.159 4.159 24 C -0.188 4.188 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.256 0.744 34 H 0.149 0.851 35 H 0.234 0.766 36 H -0.233 1.233 37 H -0.220 1.220 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.543 2.492 1.806 6.340 hybrid contribution 0.262 -0.235 -1.003 1.063 sum -5.281 2.257 0.802 5.799 Atomic orbital electron populations 1.23286 0.76660 1.05336 1.02117 1.86041 1.23286 1.27450 1.88814 1.19308 0.92824 0.84689 0.96879 1.21496 1.00902 0.92484 1.09257 1.21270 0.95136 0.97456 0.96239 1.21190 0.93673 0.98785 1.03864 1.19610 0.95476 0.91833 0.96383 1.21601 0.89938 0.99583 0.97927 0.88213 1.23697 0.97816 0.99059 0.97476 1.22094 0.82513 0.95629 0.97856 0.87871 1.43721 1.03548 1.11549 1.72166 1.23485 0.90245 0.94376 0.97747 1.65724 0.98231 1.37841 1.26840 1.20194 0.95884 0.89948 1.01530 1.24463 0.88621 1.06353 0.95799 1.86595 1.51808 1.72203 1.23326 0.92890 0.76715 0.77355 0.84465 1.25395 0.97740 0.99017 1.15880 1.20153 0.95474 0.93764 1.02276 1.83809 1.06543 1.05451 1.66993 1.23391 0.96695 0.99938 0.95907 1.20516 0.91504 0.98971 1.07832 0.91787 0.91879 0.86782 0.84359 0.83701 0.83568 0.91326 0.87037 0.74362 0.85102 0.76595 1.23286 1.21976 0.91552 0.90958 0.89679 0.86835 0.89757 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.89 10.50 -92.49 -0.97 -2.86 16 3 C 0.11 0.53 6.69 22.50 0.15 0.68 16 4 C -0.22 -0.33 9.04 22.37 0.20 -0.13 16 5 C -0.08 0.10 10.04 22.25 0.22 0.32 16 6 C -0.16 0.36 8.53 22.28 0.19 0.55 16 7 C -0.03 0.02 5.29 -19.88 -0.11 -0.08 16 8 C -0.07 0.34 3.85 -11.01 -0.04 0.29 16 9 H 0.10 -0.44 8.08 -2.39 -0.02 -0.46 16 10 C -0.14 0.79 7.27 31.18 0.23 1.02 16 11 C 0.12 -0.73 4.32 45.58 0.20 -0.53 16 12 H 0.10 -0.68 7.06 -2.39 -0.02 -0.70 16 13 N -0.67 1.50 5.42 -327.61 -1.78 -0.27 16 14 C 0.31 0.83 8.24 179.32 1.48 2.30 16 15 N -0.56 -3.15 8.95 -189.86 -1.70 -4.85 16 16 C 0.05 0.28 5.91 41.40 0.24 0.52 16 17 C -0.04 -0.12 2.94 71.24 0.21 0.09 16 18 O -0.53 -1.45 10.17 -148.98 -1.52 -2.97 16 19 Si 0.78 3.05 32.09 68.60 2.20 5.25 16 20 C -0.26 -0.92 6.50 24.58 0.16 -0.76 16 21 C -0.06 -0.02 8.91 71.24 0.63 0.61 16 22 S 0.12 0.13 21.69 -56.49 -1.23 -1.09 16 23 C -0.12 0.86 7.29 31.12 0.23 1.09 16 24 C -0.17 -0.60 9.65 22.36 0.22 -0.38 16 25 H 0.06 -0.26 7.66 -2.38 -0.02 -0.27 16 26 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 27 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.14 -0.27 6.30 -2.91 -0.02 -0.29 16 29 H 0.15 -0.82 8.06 -2.91 -0.02 -0.85 16 30 H 0.15 -1.06 6.72 -2.91 -0.02 -1.08 16 31 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.11 -0.87 6.40 -2.39 -0.02 -0.88 16 33 H 0.42 -1.47 8.83 -92.70 -0.82 -2.29 16 34 H 0.13 0.18 7.96 -2.39 -0.02 0.16 16 35 H 0.38 -0.73 8.13 -74.06 -0.60 -1.34 16 36 H -0.31 -3.11 7.11 99.48 0.71 -2.41 16 37 H -0.29 -2.59 7.11 99.48 0.71 -1.88 16 38 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.08 -0.08 6.40 -2.39 -0.02 -0.10 16 41 H 0.11 -0.98 7.63 -2.39 -0.02 -1.00 16 42 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.13 0.36 8.05 -2.91 -0.02 0.34 16 Total: 0.00 -14.92 362.95 0.01 -14.91 By element: Atomic # 1 Polarization: -14.44 SS G_CDS: -0.33 Total: -14.77 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.32 Total: 6.66 kcal Atomic # 7 Polarization: -1.65 SS G_CDS: -3.48 Total: -5.12 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -2.49 Total: -5.83 kcal Atomic # 14 Polarization: 3.05 SS G_CDS: 2.20 Total: 5.25 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.23 Total: -1.09 kcal Total: -14.92 0.01 -14.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10812632_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.253 kcal (2) G-P(sol) polarization free energy of solvation -14.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds