Wall clock time and date at job start Mon Mar 8 2021 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99911 * 2 1 4 4 C 1.38712 * 120.05596 * 180.25479 * 3 2 1 5 5 C 1.38168 * 119.94693 * 180.21381 * 4 3 2 6 6 C 1.50691 * 119.97498 * 179.79010 * 5 4 3 7 7 H 1.09004 * 112.85297 * 10.91664 * 6 5 4 8 8 C 1.53785 * 113.69246 * 142.18661 * 6 5 4 9 9 C 1.53784 * 87.08243 * 139.99268 * 8 6 5 10 10 H 1.08994 * 113.68784 * 220.01341 * 9 8 6 11 11 N 1.46495 * 113.61423 * 89.11658 * 9 8 6 12 12 C 1.39140 * 120.00119 * 107.50518 * 11 9 8 13 13 N 1.32341 * 119.71829 * 0.26510 * 12 11 9 14 14 C 1.32007 * 121.64629 * 180.27154 * 13 12 11 15 15 C 1.37982 * 120.90207 * 359.72225 * 14 13 12 16 16 C 1.50697 * 120.32613 * 180.02562 * 15 14 13 17 17 O 1.42907 * 109.47106 * 119.97631 * 16 15 14 18 18 Si 1.86301 * 109.47340 * 359.97438 * 16 15 14 19 19 C 1.38904 * 119.34805 * 0.02562 * 15 14 13 20 20 C 1.38439 * 118.48364 * 0.02562 * 19 15 14 21 21 F 1.35104 * 120.47218 * 179.97438 * 20 19 15 22 22 C 1.53780 * 113.61508 * 239.72318 * 6 5 4 23 23 C 1.38241 * 120.05144 * 359.51085 * 5 4 3 24 24 C 1.38293 * 120.11204 * 0.28253 * 23 5 4 25 25 C 1.38116 * 120.05581 * 359.94965 * 24 23 5 26 26 H 1.08998 * 109.47006 * 299.99747 * 1 2 3 27 27 H 1.08991 * 109.47035 * 59.99883 * 1 2 3 28 28 H 1.09002 * 109.46625 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.02683 * 359.97438 * 4 3 2 30 30 H 1.08992 * 113.61103 * 25.44475 * 8 6 5 31 31 H 1.09001 * 113.61132 * 254.53927 * 8 6 5 32 32 H 0.97006 * 120.00385 * 287.50366 * 11 9 8 33 33 H 1.08007 * 119.54768 * 179.74889 * 14 13 12 34 34 H 1.08999 * 109.47558 * 239.97729 * 16 15 14 35 35 H 0.96696 * 113.99635 * 179.97438 * 17 16 15 36 36 H 1.48501 * 110.00083 * 59.99445 * 18 16 15 37 37 H 1.48497 * 110.00160 * 181.31549 * 18 16 15 38 38 H 1.08001 * 120.75973 * 180.02562 * 19 15 14 39 39 H 1.08997 * 113.61617 * 105.38957 * 22 6 5 40 40 H 1.08998 * 113.69286 * 334.49376 * 22 6 5 41 41 H 1.07994 * 119.94686 * 180.25289 * 23 5 4 42 42 H 1.08003 * 119.97121 * 179.97438 * 24 23 5 43 43 H 1.08001 * 120.02829 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2849 -0.0053 5 6 4.0560 2.5171 -0.0009 6 6 5.5608 2.5982 -0.0019 7 1 6.0364 1.6369 -0.1965 8 6 6.1172 3.7459 -0.8611 9 6 7.1530 3.9726 0.2527 10 1 7.3509 5.0244 0.4592 11 7 8.3772 3.1856 0.0847 12 6 9.5593 3.8113 -0.2987 13 7 9.5728 5.1184 -0.5051 14 6 10.6715 5.7499 -0.8748 15 6 11.8558 5.0653 -1.0553 16 6 13.1024 5.7994 -1.4770 17 8 14.1140 5.6311 -0.4817 18 14 12.7195 7.6120 -1.6729 19 6 11.8875 3.6927 -0.8444 20 6 10.7200 3.0568 -0.4582 21 9 10.7052 1.7232 -0.2427 22 6 6.1388 3.3357 1.2175 23 6 3.3020 3.6758 -0.0013 24 6 1.9209 3.6047 -0.0003 25 6 1.2914 2.3753 0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 4.0206 0.3799 -0.0091 30 1 5.4211 4.5753 -0.9853 31 1 6.5543 3.4140 -1.8028 32 1 8.3636 2.2283 0.2408 33 1 10.6431 6.8172 -1.0379 34 1 13.4567 5.3982 -2.4265 35 1 14.9466 6.0776 -0.6877 36 1 12.2354 8.1710 -0.3852 37 1 13.9331 8.3422 -2.1193 38 1 12.8022 3.1343 -0.9786 39 1 6.5933 2.6728 1.9536 40 1 5.4495 4.0533 1.6625 41 1 3.7922 4.6380 -0.0019 42 1 1.3339 4.5113 -0.0002 43 1 0.2128 2.3203 0.0004 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10812632_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:12:58 Heat of formation + Delta-G solvation = -9.982016 kcal Electronic energy + Delta-G solvation = -27004.480744 eV Core-core repulsion = 22932.297153 eV Total energy + Delta-G solvation = -4072.183591 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.81106 -41.64257 -41.15984 -40.22053 -38.24320 -37.80461 -35.44192 -33.19934 -32.27857 -31.42708 -30.57970 -28.28725 -26.83102 -26.65662 -25.93323 -24.63098 -23.53370 -22.81479 -22.21175 -20.29233 -19.43012 -18.77018 -18.58851 -18.00677 -17.94577 -17.20999 -16.92766 -16.79860 -16.65238 -16.49167 -16.30466 -15.78325 -15.74067 -15.22584 -15.01090 -14.82175 -14.44910 -14.26440 -14.16289 -14.04989 -13.94785 -13.80800 -13.55895 -13.28866 -13.23285 -12.68715 -12.60737 -12.30496 -12.19736 -12.04198 -11.71608 -11.63061 -11.29029 -11.10310 -10.66016 -10.65143 -10.44344 -9.70725 -9.10222 -8.71030 -5.02028 -0.00915 0.18098 0.37193 0.53891 1.21236 1.54592 1.91124 1.95943 2.33750 2.56545 2.78279 3.10089 3.19513 3.34449 3.49439 3.64451 3.69661 3.74004 3.86921 3.89837 3.94300 4.05418 4.11078 4.16429 4.20701 4.21995 4.27405 4.37756 4.51925 4.53772 4.58805 4.64955 4.68151 4.72942 4.74542 4.83704 4.97532 5.02586 5.03852 5.11124 5.17248 5.38170 5.47785 5.52743 5.70002 5.83458 6.02740 6.22183 6.38312 6.47191 7.00445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.150 4.150 5 C -0.031 4.031 6 C -0.075 4.075 7 H 0.097 0.903 8 C -0.143 4.143 9 C 0.133 3.867 10 H 0.110 0.890 11 N -0.699 5.699 12 C 0.393 3.607 13 N -0.509 5.509 14 C 0.151 3.849 15 C -0.162 4.162 16 C -0.063 4.063 17 O -0.537 6.537 18 Si 0.679 3.321 19 C -0.036 4.036 20 C -0.020 4.020 21 F -0.134 7.134 22 C -0.137 4.137 23 C -0.154 4.154 24 C -0.077 4.077 25 C -0.213 4.213 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.412 0.588 33 H 0.164 0.836 34 H 0.079 0.921 35 H 0.381 0.619 36 H -0.251 1.251 37 H -0.258 1.258 38 H 0.148 0.852 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 2.098 -2.453 3.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.168 4.168 5 C -0.031 4.031 6 C -0.094 4.094 7 H 0.115 0.885 8 C -0.182 4.182 9 C 0.027 3.973 10 H 0.128 0.872 11 N -0.332 5.332 12 C 0.154 3.846 13 N -0.226 5.226 14 C -0.007 4.007 15 C -0.167 4.167 16 C -0.173 4.173 17 O -0.345 6.345 18 Si 0.579 3.421 19 C -0.063 4.063 20 C -0.046 4.046 21 F -0.113 7.113 22 C -0.175 4.175 23 C -0.172 4.172 24 C -0.095 4.095 25 C -0.232 4.232 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.146 0.854 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.180 0.820 34 H 0.097 0.903 35 H 0.229 0.771 36 H -0.175 1.175 37 H -0.183 1.183 38 H 0.166 0.834 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.834 2.894 -1.749 4.412 hybrid contribution 1.579 -1.366 0.348 2.116 sum -1.256 1.529 -1.401 2.424 Atomic orbital electron populations 1.23082 0.78114 1.04179 1.01427 1.86081 1.21603 1.26929 1.88597 1.19036 0.92316 0.84252 0.96008 1.20315 0.91324 0.98249 1.06931 1.19453 0.94738 0.92147 0.96786 1.21618 0.90806 0.99283 0.97653 0.88471 1.23600 0.98063 0.98268 0.98250 1.21827 0.82672 0.96857 0.95940 0.87170 1.44231 1.05562 1.10115 1.73256 1.18381 0.85589 0.88880 0.91702 1.67307 1.29838 1.06492 1.18921 1.22270 0.86734 0.99434 0.92212 1.19825 0.95357 0.93479 1.08077 1.24566 0.88505 1.11034 0.93219 1.86590 1.25164 1.76105 1.46613 0.95204 0.86733 0.73828 0.86288 1.21247 0.96838 0.94351 0.93837 1.17967 0.94923 0.78719 1.13038 1.91492 1.96999 1.29562 1.93197 1.23459 0.97734 1.00057 0.96292 1.20917 0.93602 0.98150 1.04544 1.20945 0.94593 0.97037 0.96909 1.21263 1.00136 0.92472 1.09310 0.92561 0.92548 0.88059 0.85351 0.88483 0.90712 0.75015 0.81956 0.90349 0.77067 1.17525 1.18278 0.83412 0.90560 0.88154 0.85642 0.85658 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.32 -0.87 10.50 -19.43 -0.20 -1.07 16 3 C 0.13 0.34 6.69 -39.22 -0.26 0.08 16 4 C -0.15 -0.32 9.65 -39.43 -0.38 -0.70 16 5 C -0.03 -0.03 5.29 -104.65 -0.55 -0.58 16 6 C -0.08 0.06 3.85 -90.96 -0.35 -0.29 16 7 H 0.10 -0.10 8.09 -51.93 -0.42 -0.52 16 8 C -0.14 0.13 7.25 -25.91 -0.19 -0.06 16 9 C 0.13 -0.07 4.36 -67.12 -0.29 -0.37 16 10 H 0.11 0.02 7.40 -51.93 -0.38 -0.36 16 11 N -0.70 -0.26 5.41 -53.06 -0.29 -0.55 16 12 C 0.39 0.82 7.49 -154.86 -1.16 -0.34 16 13 N -0.51 -1.09 9.13 -12.36 -0.11 -1.21 16 14 C 0.15 0.12 9.84 -17.57 -0.17 -0.05 16 15 C -0.16 -0.14 5.43 -104.47 -0.57 -0.70 16 16 C -0.06 0.06 2.83 36.00 0.10 0.16 16 17 O -0.54 -0.25 12.75 -35.23 -0.45 -0.70 16 18 Si 0.68 -1.22 29.82 -169.99 -5.07 -6.29 16 19 C -0.04 -0.06 9.75 -39.26 -0.38 -0.44 16 20 C -0.02 -0.05 7.35 -39.09 -0.29 -0.33 16 21 F -0.13 -0.36 16.65 2.25 0.04 -0.33 16 22 C -0.14 0.18 7.29 -25.92 -0.19 -0.01 16 23 C -0.15 -0.06 8.61 -39.56 -0.34 -0.40 16 24 C -0.08 -0.05 10.04 -39.61 -0.40 -0.44 16 25 C -0.21 -0.29 9.04 -39.44 -0.36 -0.64 16 26 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 27 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 28 H 0.10 -0.24 8.14 -51.93 -0.42 -0.67 16 29 H 0.13 0.18 8.05 -52.49 -0.42 -0.24 16 30 H 0.10 -0.14 6.32 -51.93 -0.33 -0.47 16 31 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 32 H 0.41 -0.23 8.17 -40.82 -0.33 -0.56 16 33 H 0.16 -0.25 4.88 -52.48 -0.26 -0.51 16 34 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 35 H 0.38 -1.33 8.74 45.56 0.40 -0.93 16 36 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 37 H -0.26 -0.07 7.11 56.52 0.40 0.33 16 38 H 0.15 0.07 8.06 -52.49 -0.42 -0.35 16 39 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 40 H 0.10 -0.16 7.73 -51.93 -0.40 -0.56 16 41 H 0.13 -0.17 6.66 -52.49 -0.35 -0.52 16 42 H 0.13 -0.17 8.06 -52.48 -0.42 -0.59 16 43 H 0.13 -0.05 6.30 -52.49 -0.33 -0.38 16 LS Contribution 359.20 15.07 5.41 5.41 Total: 0.00 -6.88 359.20 -10.81 -17.68 By element: Atomic # 1 Polarization: -3.44 SS G_CDS: -5.35 Total: -8.79 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -4.79 Total: -4.16 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -0.40 Total: -1.76 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -0.65 Total: -1.77 kcal Atomic # 9 Polarization: -0.36 SS G_CDS: 0.04 Total: -0.33 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.07 Total: -6.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -6.88 -10.81 -17.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10812632_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.700 kcal (2) G-P(sol) polarization free energy of solvation -6.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds