Wall clock time and date at job start Mon Mar 8 2021 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99911 * 2 1 4 4 C 1.38712 * 120.05596 * 180.25479 * 3 2 1 5 5 C 1.38168 * 119.94693 * 180.21381 * 4 3 2 6 6 C 1.50691 * 119.97498 * 179.79010 * 5 4 3 7 7 H 1.09004 * 112.85297 * 10.91664 * 6 5 4 8 8 C 1.53785 * 113.69246 * 142.18661 * 6 5 4 9 9 C 1.53784 * 87.08243 * 139.99268 * 8 6 5 10 10 H 1.08994 * 113.68784 * 220.01341 * 9 8 6 11 11 N 1.46495 * 113.61423 * 89.11658 * 9 8 6 12 12 C 1.39140 * 120.00119 * 107.50518 * 11 9 8 13 13 N 1.32341 * 119.71829 * 0.26510 * 12 11 9 14 14 C 1.32007 * 121.64629 * 180.27154 * 13 12 11 15 15 C 1.37982 * 120.90207 * 359.72225 * 14 13 12 16 16 C 1.50697 * 120.32613 * 180.02562 * 15 14 13 17 17 O 1.42907 * 109.47106 * 119.97631 * 16 15 14 18 18 Si 1.86301 * 109.47340 * 359.97438 * 16 15 14 19 19 C 1.38904 * 119.34805 * 0.02562 * 15 14 13 20 20 C 1.38439 * 118.48364 * 0.02562 * 19 15 14 21 21 F 1.35104 * 120.47218 * 179.97438 * 20 19 15 22 22 C 1.53780 * 113.61508 * 239.72318 * 6 5 4 23 23 C 1.38241 * 120.05144 * 359.51085 * 5 4 3 24 24 C 1.38293 * 120.11204 * 0.28253 * 23 5 4 25 25 C 1.38116 * 120.05581 * 359.94965 * 24 23 5 26 26 H 1.08998 * 109.47006 * 299.99747 * 1 2 3 27 27 H 1.08991 * 109.47035 * 59.99883 * 1 2 3 28 28 H 1.09002 * 109.46625 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.02683 * 359.97438 * 4 3 2 30 30 H 1.08992 * 113.61103 * 25.44475 * 8 6 5 31 31 H 1.09001 * 113.61132 * 254.53927 * 8 6 5 32 32 H 0.97006 * 120.00385 * 287.50366 * 11 9 8 33 33 H 1.08007 * 119.54768 * 179.74889 * 14 13 12 34 34 H 1.08999 * 109.47558 * 239.97729 * 16 15 14 35 35 H 0.96696 * 113.99635 * 179.97438 * 17 16 15 36 36 H 1.48501 * 110.00083 * 59.99445 * 18 16 15 37 37 H 1.48497 * 110.00160 * 181.31549 * 18 16 15 38 38 H 1.08001 * 120.75973 * 180.02562 * 19 15 14 39 39 H 1.08997 * 113.61617 * 105.38957 * 22 6 5 40 40 H 1.08998 * 113.69286 * 334.49376 * 22 6 5 41 41 H 1.07994 * 119.94686 * 180.25289 * 23 5 4 42 42 H 1.08003 * 119.97121 * 179.97438 * 24 23 5 43 43 H 1.08001 * 120.02829 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2849 -0.0053 5 6 4.0560 2.5171 -0.0009 6 6 5.5608 2.5982 -0.0019 7 1 6.0364 1.6369 -0.1965 8 6 6.1172 3.7459 -0.8611 9 6 7.1530 3.9726 0.2527 10 1 7.3509 5.0244 0.4592 11 7 8.3772 3.1856 0.0847 12 6 9.5593 3.8113 -0.2987 13 7 9.5728 5.1184 -0.5051 14 6 10.6715 5.7499 -0.8748 15 6 11.8558 5.0653 -1.0553 16 6 13.1024 5.7994 -1.4770 17 8 14.1140 5.6311 -0.4817 18 14 12.7195 7.6120 -1.6729 19 6 11.8875 3.6927 -0.8444 20 6 10.7200 3.0568 -0.4582 21 9 10.7052 1.7232 -0.2427 22 6 6.1388 3.3357 1.2175 23 6 3.3020 3.6758 -0.0013 24 6 1.9209 3.6047 -0.0003 25 6 1.2914 2.3753 0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 4.0206 0.3799 -0.0091 30 1 5.4211 4.5753 -0.9853 31 1 6.5543 3.4140 -1.8028 32 1 8.3636 2.2283 0.2408 33 1 10.6431 6.8172 -1.0379 34 1 13.4567 5.3982 -2.4265 35 1 14.9466 6.0776 -0.6877 36 1 12.2354 8.1710 -0.3852 37 1 13.9331 8.3422 -2.1193 38 1 12.8022 3.1343 -0.9786 39 1 6.5933 2.6728 1.9536 40 1 5.4495 4.0533 1.6625 41 1 3.7922 4.6380 -0.0019 42 1 1.3339 4.5113 -0.0002 43 1 0.2128 2.3203 0.0004 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10812632_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:12:57 Heat of formation + Delta-G solvation = -5.415259 kcal Electronic energy + Delta-G solvation = -27004.282714 eV Core-core repulsion = 22932.297153 eV Total energy + Delta-G solvation = -4071.985562 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.96337 -41.66632 -41.20668 -40.23450 -38.25049 -37.79593 -35.46421 -33.26721 -32.30988 -31.46041 -30.60416 -28.24564 -26.81075 -26.60950 -25.93512 -24.68452 -23.57199 -22.85732 -22.22941 -20.29158 -19.46529 -18.79526 -18.57023 -18.04494 -18.03113 -17.23821 -16.97709 -16.89097 -16.68168 -16.49240 -16.31228 -15.78836 -15.72332 -15.23873 -15.03599 -14.87838 -14.46453 -14.27997 -14.19482 -14.05605 -13.98173 -13.83774 -13.49742 -13.26465 -13.19114 -12.66649 -12.59465 -12.28159 -12.18221 -12.07198 -11.71079 -11.62241 -11.26368 -11.10701 -10.73668 -10.69662 -10.41235 -9.75363 -9.16192 -8.75839 -4.88657 -0.08996 0.10428 0.32736 0.47705 1.32061 1.64477 1.94076 1.99709 2.34527 2.50483 2.74022 3.01960 3.21837 3.39089 3.52547 3.65483 3.73043 3.76237 3.86641 3.87785 3.98754 4.07117 4.11854 4.19425 4.27295 4.33810 4.38536 4.39199 4.47174 4.54378 4.64669 4.69631 4.70081 4.73462 4.81581 4.87592 4.99218 5.01062 5.06016 5.11434 5.18846 5.34069 5.44878 5.50558 5.67553 5.83220 6.01424 6.18489 6.43146 6.62120 6.94666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.109 3.891 4 C -0.171 4.171 5 C -0.033 4.033 6 C -0.072 4.072 7 H 0.096 0.904 8 C -0.136 4.136 9 C 0.134 3.866 10 H 0.105 0.895 11 N -0.697 5.697 12 C 0.384 3.616 13 N -0.522 5.522 14 C 0.147 3.853 15 C -0.168 4.168 16 C -0.072 4.072 17 O -0.560 6.560 18 Si 0.762 3.238 19 C -0.042 4.042 20 C -0.038 4.038 21 F -0.140 7.140 22 C -0.129 4.129 23 C -0.158 4.158 24 C -0.082 4.082 25 C -0.222 4.222 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.415 0.585 33 H 0.183 0.817 34 H 0.101 0.899 35 H 0.397 0.603 36 H -0.294 1.294 37 H -0.283 1.283 38 H 0.155 0.845 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 3.140 -2.840 4.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.064 3.936 4 C -0.189 4.189 5 C -0.033 4.033 6 C -0.091 4.091 7 H 0.114 0.886 8 C -0.174 4.174 9 C 0.028 3.972 10 H 0.123 0.877 11 N -0.330 5.330 12 C 0.146 3.854 13 N -0.239 5.239 14 C -0.010 4.010 15 C -0.173 4.173 16 C -0.181 4.181 17 O -0.370 6.370 18 Si 0.666 3.334 19 C -0.068 4.068 20 C -0.064 4.064 21 F -0.119 7.119 22 C -0.167 4.167 23 C -0.175 4.175 24 C -0.100 4.100 25 C -0.240 4.240 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.253 0.747 33 H 0.199 0.801 34 H 0.118 0.882 35 H 0.247 0.753 36 H -0.221 1.221 37 H -0.210 1.210 38 H 0.173 0.827 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.007 3.914 -2.150 5.383 hybrid contribution 1.650 -1.662 0.487 2.392 sum -1.357 2.251 -1.663 3.110 Atomic orbital electron populations 1.23295 0.76603 1.05372 1.02157 1.86040 1.23348 1.27400 1.88818 1.19282 0.92725 0.84728 0.96853 1.20498 0.91594 0.98837 1.08011 1.19619 0.95443 0.91933 0.96350 1.21598 0.89978 0.99418 0.98080 0.88584 1.23565 0.97919 0.98376 0.97576 1.21830 0.82424 0.96519 0.96407 0.87655 1.44296 1.05474 1.10340 1.72849 1.18524 0.86007 0.89050 0.91860 1.67347 1.30499 1.06519 1.19505 1.22645 0.86523 1.00325 0.91498 1.20048 0.96148 0.93331 1.07751 1.24792 0.87790 1.11764 0.93733 1.86543 1.26299 1.76769 1.47435 0.94268 0.84440 0.71404 0.83253 1.21431 0.96863 0.94881 0.93597 1.18122 0.95527 0.78581 1.14215 1.91466 1.97070 1.30021 1.93388 1.23422 0.97372 0.99938 0.95939 1.21187 0.93757 0.98723 1.03876 1.21273 0.94996 0.97551 0.96175 1.21493 1.00933 0.92390 1.09218 0.91793 0.91797 0.86729 0.85677 0.87522 0.91667 0.74698 0.80065 0.88159 0.75257 1.22094 1.20979 0.82739 0.90612 0.87386 0.83789 0.83587 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.34 -2.26 10.50 -92.42 -0.97 -3.23 16 3 C 0.11 0.69 6.69 22.51 0.15 0.84 16 4 C -0.17 -0.94 9.65 22.37 0.22 -0.73 16 5 C -0.03 -0.07 5.29 -19.88 -0.11 -0.17 16 6 C -0.07 0.09 3.85 -11.01 -0.04 0.05 16 7 H 0.10 -0.10 8.09 -2.38 -0.02 -0.12 16 8 C -0.14 0.25 7.25 31.12 0.23 0.47 16 9 C 0.13 -0.13 4.36 45.52 0.20 0.07 16 10 H 0.11 0.04 7.40 -2.39 -0.02 0.02 16 11 N -0.70 -0.99 5.41 -321.78 -1.74 -2.73 16 12 C 0.38 1.86 7.49 133.09 1.00 2.86 16 13 N -0.52 -2.39 9.13 -193.03 -1.76 -4.15 16 14 C 0.15 0.23 9.84 84.61 0.83 1.06 16 15 C -0.17 -0.26 5.43 -19.77 -0.11 -0.37 16 16 C -0.07 0.18 2.83 71.23 0.20 0.38 16 17 O -0.56 -0.27 12.75 -148.98 -1.90 -2.17 16 18 Si 0.76 -3.21 29.82 68.60 2.05 -1.17 16 19 C -0.04 -0.15 9.75 22.48 0.22 0.07 16 20 C -0.04 -0.21 7.35 22.58 0.17 -0.04 16 21 F -0.14 -0.93 16.65 44.97 0.75 -0.18 16 22 C -0.13 0.34 7.29 31.12 0.23 0.57 16 23 C -0.16 -0.03 8.61 22.28 0.19 0.17 16 24 C -0.08 -0.04 10.04 22.25 0.22 0.18 16 25 C -0.22 -0.61 9.04 22.36 0.20 -0.41 16 26 H 0.06 -0.21 7.66 -2.39 -0.02 -0.22 16 27 H 0.06 -0.20 7.66 -2.39 -0.02 -0.22 16 28 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.13 0.61 8.05 -2.91 -0.02 0.58 16 30 H 0.11 -0.40 6.32 -2.39 -0.02 -0.41 16 31 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.42 -0.07 8.17 -92.70 -0.76 -0.83 16 33 H 0.18 -0.65 4.88 -2.91 -0.01 -0.67 16 34 H 0.10 -0.69 7.96 -2.39 -0.02 -0.70 16 35 H 0.40 -2.99 8.74 -74.06 -0.65 -3.64 16 36 H -0.29 -0.86 7.11 99.48 0.71 -0.16 16 37 H -0.28 0.00 7.11 99.48 0.71 0.71 16 38 H 0.15 0.20 8.06 -2.91 -0.02 0.18 16 39 H 0.08 -0.17 8.14 -2.39 -0.02 -0.18 16 40 H 0.11 -0.42 7.73 -2.39 -0.02 -0.44 16 41 H 0.14 -0.59 6.66 -2.91 -0.02 -0.61 16 42 H 0.15 -0.62 8.06 -2.91 -0.02 -0.64 16 43 H 0.14 -0.15 6.30 -2.91 -0.02 -0.16 16 Total: 0.00 -16.65 359.20 1.03 -15.62 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: -0.30 Total: -8.07 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 4.91 Total: 6.07 kcal Atomic # 7 Polarization: -3.38 SS G_CDS: -3.50 Total: -6.89 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: -2.87 Total: -5.40 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.75 Total: -0.18 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.05 Total: -1.17 kcal Total: -16.65 1.03 -15.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10812632_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.209 kcal (2) G-P(sol) polarization free energy of solvation -16.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds