Wall clock time and date at job start Mon Mar 8 2021 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86294 * 109.47276 * 2 1 4 4 C 1.50703 * 109.47181 * 239.99764 * 2 1 3 5 5 C 1.38838 * 120.33314 * 300.00575 * 4 2 1 6 6 C 1.38347 * 118.49984 * 179.97438 * 5 4 2 7 7 C 1.39093 * 119.10392 * 359.97438 * 6 5 4 8 8 N 1.39004 * 119.70966 * 179.97438 * 7 6 5 9 9 C 1.46502 * 119.99752 * 359.97438 * 8 7 6 10 10 H 1.08999 * 112.85025 * 23.81039 * 9 8 7 11 11 C 1.53779 * 113.61301 * 155.00050 * 9 8 7 12 12 C 1.53787 * 87.07963 * 89.11687 * 11 9 8 13 13 H 1.09004 * 113.61202 * 139.98084 * 12 11 9 14 14 O 1.42896 * 113.61435 * 270.88419 * 12 11 9 15 15 C 1.53779 * 113.61564 * 252.50117 * 9 8 7 16 16 N 1.32427 * 120.58648 * 0.25222 * 7 6 5 17 17 C 1.31945 * 121.62469 * 359.48399 * 16 7 6 18 18 H 0.96703 * 113.99969 * 300.00107 * 1 2 3 19 19 H 1.09000 * 109.46867 * 120.00280 * 2 1 3 20 20 H 1.48500 * 110.00194 * 178.67710 * 3 2 1 21 21 H 1.48497 * 110.00275 * 300.00088 * 3 2 1 22 22 H 1.07997 * 120.75314 * 359.97438 * 5 4 2 23 23 H 1.08006 * 120.44650 * 180.02562 * 6 5 4 24 24 H 0.96996 * 119.99851 * 179.97438 * 8 7 6 25 25 H 1.08997 * 113.61646 * 334.57319 * 11 9 8 26 26 H 1.08998 * 113.69354 * 203.67627 * 11 9 8 27 27 H 0.96699 * 113.99840 * 179.97438 * 14 12 11 28 28 H 1.09002 * 113.61557 * 156.33711 * 15 9 8 29 29 H 1.09004 * 113.61501 * 25.43131 * 15 9 8 30 30 H 1.08001 * 119.57645 * 180.24340 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6001 -2.0396 -1.4570 6 6 2.0815 -2.6544 -2.5991 7 6 2.8760 -1.9243 -3.4768 8 7 3.3668 -2.5298 -4.6278 9 6 3.0471 -3.9310 -4.9116 10 1 2.1330 -4.2645 -4.4204 11 6 3.1077 -4.2860 -6.4067 12 6 4.5942 -4.6139 -6.1880 13 1 4.9297 -5.5001 -6.7268 14 8 5.4605 -3.4919 -6.3685 15 6 4.2368 -4.8859 -4.7172 16 7 3.1735 -0.6591 -3.2230 17 6 2.7244 -0.0457 -2.1445 18 1 -0.3933 0.4417 0.7651 19 1 1.7923 -0.5139 0.8900 20 1 3.5346 1.7702 0.0322 21 1 1.5616 2.4679 -1.2084 22 1 0.9807 -2.5813 -0.7576 23 1 1.8429 -3.6871 -2.8067 24 1 3.9209 -2.0245 -5.2430 25 1 2.9410 -3.4335 -7.0650 26 1 2.5043 -5.1530 -6.6758 27 1 6.3966 -3.6919 -6.2320 28 1 3.9418 -5.9171 -4.5230 29 1 4.9815 -4.5175 -4.0116 30 1 2.9844 0.9882 -1.9722 There are 40 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 40 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10859624_13915762.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:25:18 Heat of formation + Delta-G solvation = -2.267508 kcal Electronic energy + Delta-G solvation = -15093.461598 eV Core-core repulsion = 12470.583927 eV Total energy + Delta-G solvation = -2622.877671 eV No. of doubly occupied orbitals = 40 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66722 -40.46062 -37.84773 -36.47283 -34.69036 -33.50510 -31.25774 -26.81178 -26.74831 -25.26619 -24.61631 -22.58399 -20.55612 -19.20096 -18.41058 -18.19151 -17.89902 -16.69958 -16.39712 -16.36231 -15.57224 -15.38205 -15.25518 -14.89056 -14.22170 -14.04457 -13.90197 -13.75480 -13.52907 -12.69875 -12.41401 -12.38619 -12.04716 -11.63504 -11.11892 -10.90573 -10.79186 -10.62843 -10.18501 -8.78673 -4.97657 0.03765 0.28034 1.31719 1.62952 1.95252 1.98709 2.64597 3.09726 3.34175 3.45063 3.48101 3.67599 3.73716 3.81142 3.90813 4.02489 4.07023 4.28363 4.40784 4.58762 4.63785 4.70945 4.78659 4.88726 4.89933 4.97729 5.02495 5.18806 5.43163 5.97890 6.43533 6.78809 6.94880 7.00582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.057 4.057 3 Si 0.769 3.231 4 C -0.204 4.204 5 C -0.007 4.007 6 C -0.237 4.237 7 C 0.392 3.608 8 N -0.699 5.699 9 C 0.122 3.878 10 H 0.110 0.890 11 C -0.141 4.141 12 C 0.074 3.926 13 H 0.088 0.912 14 O -0.574 6.574 15 C -0.181 4.181 16 N -0.574 5.574 17 C 0.125 3.875 18 H 0.404 0.596 19 H 0.098 0.902 20 H -0.291 1.291 21 H -0.302 1.302 22 H 0.161 0.839 23 H 0.161 0.839 24 H 0.405 0.595 25 H 0.065 0.935 26 H 0.136 0.864 27 H 0.396 0.604 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 -4.677 3.571 5.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.168 4.168 3 Si 0.677 3.323 4 C -0.209 4.209 5 C -0.032 4.032 6 C -0.262 4.262 7 C 0.156 3.844 8 N -0.330 5.330 9 C 0.016 3.984 10 H 0.128 0.872 11 C -0.179 4.179 12 C 0.015 3.985 13 H 0.106 0.894 14 O -0.383 6.383 15 C -0.220 4.220 16 N -0.292 5.292 17 C -0.032 4.032 18 H 0.255 0.745 19 H 0.116 0.884 20 H -0.218 1.218 21 H -0.231 1.231 22 H 0.178 0.822 23 H 0.178 0.822 24 H 0.242 0.758 25 H 0.084 0.916 26 H 0.154 0.846 27 H 0.247 0.753 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.630 -3.853 1.862 4.325 hybrid contribution 0.597 -0.637 -0.035 0.873 sum -0.034 -4.489 1.827 4.847 Atomic orbital electron populations 1.86435 1.17215 1.82311 1.51466 1.24470 0.85761 1.10014 0.96554 0.94580 0.77217 0.75908 0.84625 1.20377 1.04484 0.96585 0.99464 1.21500 0.93398 0.92905 0.95406 1.21793 1.04503 1.02957 0.96904 1.18716 0.89753 0.88171 0.87805 1.44384 1.55125 1.11779 1.21713 1.22056 0.98945 0.79834 0.97561 0.87229 1.23554 0.95495 1.03610 0.95202 1.22881 0.91089 0.89073 0.95493 0.89372 1.86374 1.22314 1.36467 1.93118 1.24219 0.98676 1.01257 0.97861 1.67047 1.28732 1.10719 1.22677 1.22121 0.93902 0.98252 0.88897 0.74505 0.88402 1.21829 1.23051 0.82160 0.82200 0.75824 0.91581 0.84598 0.75330 0.85925 0.91913 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.05 12.75 -148.98 -1.90 -1.95 16 2 C -0.06 -0.03 2.83 71.24 0.20 0.17 16 3 Si 0.77 0.09 29.82 68.60 2.05 2.14 16 4 C -0.20 -1.53 5.43 -19.76 -0.11 -1.64 16 5 C -0.01 -0.03 9.77 22.44 0.22 0.19 16 6 C -0.24 -1.24 9.29 22.50 0.21 -1.03 16 7 C 0.39 3.89 7.65 133.04 1.02 4.91 16 8 N -0.70 -4.26 5.32 -322.06 -1.71 -5.97 16 9 C 0.12 -0.10 4.11 45.52 0.19 0.08 16 10 H 0.11 -0.40 6.10 -2.39 -0.01 -0.42 16 11 C -0.14 0.41 7.66 31.12 0.24 0.64 16 12 C 0.07 -0.22 5.28 31.12 0.16 -0.05 16 13 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 14 O -0.57 -0.46 12.31 -148.98 -1.83 -2.29 16 15 C -0.18 0.65 7.71 31.12 0.24 0.89 16 16 N -0.57 -8.34 10.39 -193.26 -2.01 -10.35 16 17 C 0.12 1.51 9.84 84.64 0.83 2.35 16 18 H 0.40 -4.32 8.74 -74.05 -0.65 -4.96 16 19 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 20 H -0.29 -1.74 7.11 99.48 0.71 -1.03 16 21 H -0.30 -2.64 7.11 99.48 0.71 -1.93 16 22 H 0.16 -0.04 8.06 -2.91 -0.02 -0.07 16 23 H 0.16 -0.13 6.03 -2.91 -0.02 -0.14 16 24 H 0.41 3.51 7.71 -92.71 -0.72 2.80 16 25 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.14 -1.11 8.14 -2.39 -0.02 -1.13 16 27 H 0.40 -2.42 9.12 -74.06 -0.68 -3.09 16 28 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 29 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.14 1.55 4.88 -2.91 -0.01 1.54 16 Total: 0.00 -19.34 253.69 -3.02 -22.36 By element: Atomic # 1 Polarization: -9.62 SS G_CDS: -0.81 Total: -10.43 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 3.20 Total: 6.50 kcal Atomic # 7 Polarization: -12.60 SS G_CDS: -3.72 Total: -16.32 kcal Atomic # 8 Polarization: -0.51 SS G_CDS: -3.73 Total: -4.25 kcal Atomic # 14 Polarization: 0.09 SS G_CDS: 2.05 Total: 2.14 kcal Total: -19.34 -3.02 -22.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10859624_13915762.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.095 kcal (2) G-P(sol) polarization free energy of solvation -19.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds