Wall clock time and date at job start Mon Mar 8 2021 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.47067 * 2 1 4 4 C 1.50695 * 109.47609 * 239.99883 * 2 1 3 5 5 C 1.33333 * 125.94729 * 300.00230 * 4 2 1 6 6 N 1.32128 * 114.57493 * 180.02562 * 5 4 2 7 7 C 1.29682 * 116.86697 * 359.97438 * 6 5 4 8 8 N 1.38617 * 124.94601 * 179.97438 * 7 6 5 9 9 C 1.46496 * 119.99962 * 0.02970 * 8 7 6 10 10 H 1.08994 * 112.91109 * 23.74906 * 9 8 7 11 11 C 1.53787 * 113.61210 * 155.00170 * 9 8 7 12 12 C 1.53779 * 87.07963 * 139.97940 * 11 9 8 13 13 H 1.09001 * 113.61377 * 89.20020 * 12 11 9 14 14 O 1.42901 * 113.61102 * 220.01463 * 12 11 9 15 15 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 16 16 S 1.70965 * 110.10571 * 0.24968 * 7 6 5 17 17 H 0.96701 * 113.99933 * 60.00445 * 1 2 3 18 18 H 1.09004 * 109.47433 * 119.99459 * 2 1 3 19 19 H 1.48500 * 110.00190 * 59.99965 * 3 2 1 20 20 H 1.48508 * 110.00129 * 181.31776 * 3 2 1 21 21 H 1.07996 * 122.71631 * 0.02562 * 5 4 2 22 22 H 0.97002 * 119.99548 * 180.02562 * 8 7 6 23 23 H 1.08997 * 113.61028 * 254.52900 * 11 9 8 24 24 H 1.09000 * 113.61529 * 25.43039 * 11 9 8 25 25 H 0.96703 * 113.99679 * 179.97438 * 14 12 11 26 26 H 1.09002 * 113.61557 * 270.88569 * 15 12 11 27 27 H 1.09004 * 113.61501 * 139.97990 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6835 -1.9789 -1.5579 6 7 2.2386 -2.3725 -2.6904 7 6 2.9432 -1.4944 -3.3340 8 7 3.5975 -1.7262 -4.5339 9 6 3.5201 -3.0448 -5.1675 10 1 2.6389 -3.6102 -4.8645 11 6 3.7365 -3.0103 -6.6897 12 6 4.5561 -4.3009 -6.5232 13 1 3.9583 -5.2097 -6.5922 14 8 5.7279 -4.3441 -7.3400 15 6 4.8282 -3.8485 -5.0789 16 16 2.9540 -0.0116 -2.4832 17 1 -0.3933 0.4416 -0.7651 18 1 1.7923 -0.5138 0.8900 19 1 1.5614 2.4679 1.2085 20 1 3.5346 1.7704 -0.0321 21 1 1.0779 -2.6318 -0.9469 22 1 4.1064 -1.0153 -4.9539 23 1 2.8202 -3.1460 -7.2641 24 1 4.3269 -2.1587 -7.0276 25 1 6.2477 -5.1533 -7.2394 26 1 5.7171 -3.2260 -4.9765 27 1 4.7932 -4.6609 -4.3530 There are 38 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 38 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10859624_15704118.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:25:21 Heat of formation + Delta-G solvation = -0.133396 kcal Electronic energy + Delta-G solvation = -13586.756024 eV Core-core repulsion = 11053.123141 eV Total energy + Delta-G solvation = -2533.632882 eV No. of doubly occupied orbitals = 38 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01775 -40.13645 -37.91162 -36.68871 -34.47939 -31.20574 -26.98007 -26.73691 -25.53766 -23.94849 -21.33360 -20.76003 -19.49977 -18.74002 -17.99797 -17.07658 -16.54832 -16.32338 -16.01010 -15.81195 -15.54901 -14.97817 -14.68690 -14.11395 -13.67929 -13.52764 -12.95560 -12.80538 -12.47006 -12.33976 -12.04772 -11.73298 -11.12387 -10.88546 -10.77560 -10.30158 -10.18650 -8.76437 -5.11430 -0.08809 -0.00655 0.64544 1.26091 1.57122 1.87462 1.94631 2.13505 3.27518 3.44878 3.50613 3.59456 3.71878 3.83311 3.92924 3.94344 4.44306 4.48264 4.68864 4.69433 4.73413 4.90311 4.95165 4.97441 5.25565 5.82996 6.10865 6.72269 6.84282 6.97217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.013 4.013 3 Si 0.730 3.270 4 C -0.308 4.308 5 C 0.104 3.896 6 N -0.578 5.578 7 C 0.314 3.686 8 N -0.674 5.674 9 C 0.142 3.858 10 H 0.111 0.889 11 C -0.134 4.134 12 C 0.081 3.919 13 H 0.101 0.899 14 O -0.578 6.578 15 C -0.180 4.180 16 S 0.115 5.885 17 H 0.395 0.605 18 H 0.119 0.881 19 H -0.271 1.271 20 H -0.269 1.269 21 H 0.179 0.821 22 H 0.424 0.576 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.396 0.604 26 H 0.086 0.914 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 0.855 -3.098 3.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.127 4.127 3 Si 0.633 3.367 4 C -0.431 4.431 5 C -0.047 4.047 6 N -0.304 5.304 7 C -0.056 4.056 8 N -0.314 5.314 9 C 0.034 3.966 10 H 0.129 0.871 11 C -0.172 4.172 12 C 0.021 3.979 13 H 0.119 0.881 14 O -0.386 6.386 15 C -0.220 4.220 16 S 0.364 5.636 17 H 0.245 0.755 18 H 0.136 0.864 19 H -0.197 1.197 20 H -0.195 1.195 21 H 0.196 0.804 22 H 0.264 0.736 23 H 0.109 0.891 24 H 0.114 0.886 25 H 0.246 0.754 26 H 0.105 0.895 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.125 2.016 -2.784 3.617 hybrid contribution 0.043 -1.571 0.810 1.768 sum 1.167 0.445 -1.974 2.336 Atomic orbital electron populations 1.86476 1.16886 1.82115 1.50282 1.24216 0.84941 1.09278 0.94218 0.94096 0.79127 0.76003 0.87445 1.25714 1.12987 0.99212 1.05217 1.21451 0.97650 0.93644 0.91928 1.66467 1.18137 1.34629 1.11153 1.23985 0.94861 0.93989 0.92773 1.44086 1.53781 1.14690 1.18800 1.22234 0.98744 0.83241 0.92366 0.87090 1.23474 1.00648 0.98337 0.94764 1.23135 0.87318 0.98466 0.88970 0.88094 1.86472 1.38822 1.46683 1.66616 1.24196 0.98711 1.00736 0.98352 1.83846 1.50741 1.12817 1.16208 0.75471 0.86425 1.19664 1.19528 0.80394 0.73644 0.89083 0.88616 0.75357 0.89535 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.17 12.87 -148.98 -1.92 -2.09 15 2 C -0.01 0.00 2.99 71.23 0.21 0.21 15 3 Si 0.73 -0.87 31.05 68.60 2.13 1.26 15 4 C -0.31 -0.56 5.74 24.57 0.14 -0.42 15 5 C 0.10 0.47 11.22 83.54 0.94 1.41 15 6 N -0.58 -3.79 9.83 -202.02 -1.99 -5.77 15 7 C 0.31 0.95 8.09 179.32 1.45 2.40 15 8 N -0.67 0.66 5.51 -327.89 -1.81 -1.14 15 9 C 0.14 -0.20 4.36 45.52 0.20 0.00 15 10 H 0.11 0.11 7.67 -2.39 -0.02 0.10 15 11 C -0.13 0.43 7.66 31.12 0.24 0.67 15 12 C 0.08 -0.23 5.21 31.12 0.16 -0.07 15 13 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 15 14 O -0.58 0.27 13.67 -148.98 -2.04 -1.77 15 15 C -0.18 0.30 7.71 31.12 0.24 0.54 15 16 S 0.11 0.01 20.57 -56.49 -1.16 -1.15 15 17 H 0.40 -2.85 8.70 -74.06 -0.64 -3.50 15 18 H 0.12 0.06 7.96 -2.38 -0.02 0.04 15 19 H -0.27 -1.27 7.11 99.48 0.71 -0.56 15 20 H -0.27 -0.94 7.11 99.48 0.71 -0.23 15 21 H 0.18 0.48 8.06 -2.91 -0.02 0.45 15 22 H 0.42 -2.15 8.85 -92.71 -0.82 -2.97 15 23 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 15 24 H 0.10 -0.29 8.12 -2.39 -0.02 -0.31 15 25 H 0.40 -3.20 9.12 -74.05 -0.68 -3.87 15 26 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 15 27 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 15 Total: 0.00 -13.83 251.75 -4.08 -17.91 By element: Atomic # 1 Polarization: -11.11 SS G_CDS: -0.88 Total: -12.00 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 3.58 Total: 4.75 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -3.79 Total: -6.92 kcal Atomic # 8 Polarization: 0.10 SS G_CDS: -3.95 Total: -3.85 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: 2.13 Total: 1.26 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.16 Total: -1.15 kcal Total: -13.83 -4.08 -17.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10859624_15704118.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.775 kcal (2) G-P(sol) polarization free energy of solvation -13.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds