Wall clock time and date at job start Mon Mar 8 2021 03:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33334 * 125.95242 * 2 1 4 4 C 1.50698 * 122.70915 * 359.97438 * 3 2 1 5 5 O 1.42893 * 109.47263 * 329.99699 * 4 3 2 6 6 Si 1.86301 * 109.47104 * 209.99652 * 4 3 2 7 7 N 1.32117 * 114.57757 * 179.97438 * 3 2 1 8 8 C 1.29688 * 116.86809 * 0.02562 * 7 3 2 9 9 N 1.38618 * 124.94975 * 179.97438 * 8 7 3 10 10 C 1.46492 * 120.00100 * 179.97438 * 9 8 7 11 11 H 1.09008 * 112.84845 * 336.19694 * 10 9 8 12 12 C 1.53775 * 113.69101 * 107.46891 * 10 9 8 13 13 C 1.53779 * 87.08438 * 139.99340 * 12 10 9 14 14 H 1.09002 * 113.61731 * 89.11293 * 13 12 10 15 15 O 1.42898 * 113.68762 * 220.00851 * 13 12 10 16 16 C 1.53777 * 113.61596 * 205.00373 * 10 9 8 17 17 S 1.70965 * 110.10257 * 0.23957 * 8 7 3 18 18 H 1.08997 * 109.46956 * 89.99977 * 1 2 3 19 19 H 1.08997 * 109.47297 * 209.99975 * 1 2 3 20 20 H 1.09000 * 109.46812 * 330.00364 * 1 2 3 21 21 H 1.09004 * 109.47327 * 89.99594 * 4 3 2 22 22 H 0.96698 * 114.00298 * 179.97438 * 5 4 3 23 23 H 1.48500 * 109.99953 * 298.68417 * 6 4 3 24 24 H 1.48505 * 109.99736 * 59.99858 * 6 4 3 25 25 H 0.97005 * 119.99734 * 0.02562 * 9 8 7 26 26 H 1.08993 * 113.61636 * 25.43703 * 12 10 9 27 27 H 1.09008 * 113.61006 * 254.53946 * 12 10 9 28 28 H 0.96697 * 114.00154 * 279.05796 * 15 13 12 29 29 H 1.08997 * 113.61941 * 105.38208 * 16 10 9 30 30 H 1.09005 * 113.61136 * 334.48373 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4817 2.5020 -0.6747 6 14 2.9327 3.6147 -0.8786 7 7 3.5850 0.8188 0.0005 8 6 3.9315 -0.4310 0.0005 9 7 5.2385 -0.8927 0.0005 10 6 5.5066 -2.3329 0.0010 11 1 4.6805 -2.9171 0.4067 12 6 6.0350 -2.8635 -1.3421 13 6 6.9918 -3.7489 -0.5263 14 1 6.5718 -4.7201 -0.2648 15 8 8.3034 -3.8438 -1.0854 16 6 6.8747 -2.7046 0.5965 17 16 2.5413 -1.4261 -0.0070 18 1 -0.3633 0.0000 -1.0276 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6088 2.8217 1.0270 22 1 0.0691 3.3757 -0.7129 23 1 4.2371 3.6284 -0.1689 24 1 3.1221 3.1636 -2.2807 25 1 5.9756 -0.2621 0.0009 26 1 6.5431 -2.1075 -1.9408 27 1 5.2953 -3.4278 -1.9101 28 1 8.3778 -4.4822 -1.8078 29 1 6.8131 -3.1406 1.5936 30 1 7.6125 -1.9052 0.5279 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10859624_15704122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:25:23 Heat of formation + Delta-G solvation = -4.099638 kcal Electronic energy + Delta-G solvation = -15423.707122 eV Core-core repulsion = 12734.364631 eV Total energy + Delta-G solvation = -2689.342490 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 243.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25108 -40.53095 -37.81854 -36.81784 -34.75794 -32.54821 -29.36673 -26.92851 -25.90891 -25.25916 -23.99414 -21.50679 -20.05551 -19.54011 -18.74278 -18.04499 -17.44318 -16.79129 -16.39450 -16.10592 -15.76099 -15.51023 -14.88563 -14.33219 -14.09517 -14.00263 -13.68336 -13.64964 -13.51299 -12.98495 -12.91467 -12.56436 -12.36151 -11.90219 -11.73871 -11.13293 -10.93113 -10.82622 -10.40457 -10.11448 -8.75311 -4.99484 -0.15484 -0.00619 0.60284 1.24354 1.64395 1.72869 1.76340 2.18239 3.05780 3.18201 3.33962 3.47697 3.63253 3.78477 3.94128 4.06352 4.23215 4.28317 4.40179 4.58840 4.60969 4.75792 4.81328 4.83549 4.85201 4.96606 5.09598 5.30891 5.53852 6.10121 6.72047 6.80330 6.93456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.242 4.242 3 C 0.071 3.929 4 C -0.034 4.034 5 O -0.551 6.551 6 Si 0.811 3.189 7 N -0.586 5.586 8 C 0.304 3.696 9 N -0.680 5.680 10 C 0.127 3.873 11 H 0.122 0.878 12 C -0.184 4.184 13 C 0.085 3.915 14 H 0.113 0.887 15 O -0.579 6.579 16 C -0.134 4.134 17 S 0.131 5.869 18 H 0.071 0.929 19 H 0.067 0.933 20 H 0.095 0.905 21 H 0.102 0.898 22 H 0.408 0.592 23 H -0.305 1.305 24 H -0.324 1.324 25 H 0.412 0.588 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.398 0.602 29 H 0.098 0.902 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -1.519 0.968 3.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.364 4.364 3 C -0.057 4.057 4 C -0.146 4.146 5 O -0.361 6.361 6 Si 0.719 3.281 7 N -0.315 5.315 8 C -0.067 4.067 9 N -0.319 5.319 10 C 0.022 3.978 11 H 0.139 0.861 12 C -0.223 4.223 13 C 0.026 3.974 14 H 0.130 0.870 15 O -0.387 6.387 16 C -0.172 4.172 17 S 0.379 5.621 18 H 0.090 0.910 19 H 0.086 0.914 20 H 0.113 0.887 21 H 0.120 0.880 22 H 0.260 0.740 23 H -0.234 1.234 24 H -0.254 1.254 25 H 0.250 0.750 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.248 0.752 29 H 0.117 0.883 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.520 -2.500 0.946 3.075 hybrid contribution 0.319 0.176 -0.357 0.510 sum -1.200 -2.325 0.590 2.682 Atomic orbital electron populations 1.20136 0.84756 1.03342 1.02942 1.25567 1.02706 0.92659 1.15517 1.19466 0.86391 0.96837 1.03039 1.23942 0.93594 0.94420 1.02652 1.86418 1.32876 1.37965 1.78854 0.95408 0.76194 0.82646 0.73808 1.65769 1.18259 1.18185 1.29313 1.23596 0.93118 0.91469 0.98529 1.44118 1.01057 1.07432 1.79309 1.22532 0.98517 0.78566 0.98218 0.86071 1.24269 1.00144 1.00512 0.97405 1.23143 0.82769 0.97908 0.93628 0.86979 1.86481 1.29919 1.66764 1.55561 1.23454 0.94933 0.99181 0.99641 1.83612 0.95164 1.09573 1.73740 0.91036 0.91420 0.88677 0.88020 0.73957 1.23389 1.25385 0.74991 0.89975 0.89403 0.75151 0.88347 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.13 8.96 71.24 0.64 0.51 16 2 C -0.24 -1.83 6.50 24.58 0.16 -1.67 16 3 C 0.07 0.72 5.95 41.41 0.25 0.96 16 4 C -0.03 -0.11 2.81 71.24 0.20 0.09 16 5 O -0.55 0.46 9.86 -148.98 -1.47 -1.01 16 6 Si 0.81 3.49 32.08 68.60 2.20 5.69 16 7 N -0.59 -7.60 8.95 -189.85 -1.70 -9.30 16 8 C 0.30 2.61 8.24 179.32 1.48 4.09 16 9 N -0.68 -2.59 5.51 -327.91 -1.81 -4.40 16 10 C 0.13 -0.21 4.22 45.52 0.19 -0.02 16 11 H 0.12 -0.45 7.06 -2.38 -0.02 -0.47 16 12 C -0.18 0.43 7.71 31.12 0.24 0.67 16 13 C 0.09 -0.32 5.21 31.12 0.16 -0.16 16 14 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 15 O -0.58 0.25 13.67 -148.98 -2.04 -1.78 16 16 C -0.13 0.35 7.66 31.12 0.24 0.59 16 17 S 0.13 0.63 21.69 -56.49 -1.23 -0.59 16 18 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 19 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 20 H 0.09 0.10 6.62 -2.39 -0.02 0.09 16 21 H 0.10 -0.11 7.96 -2.39 -0.02 -0.13 16 22 H 0.41 -4.85 8.74 -74.06 -0.65 -5.50 16 23 H -0.31 -3.92 7.11 99.48 0.71 -3.22 16 24 H -0.32 -4.63 7.11 99.48 0.71 -3.92 16 25 H 0.41 1.56 8.85 -92.70 -0.82 0.74 16 26 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.09 -0.36 8.14 -2.38 -0.02 -0.38 16 28 H 0.40 -3.35 9.12 -74.06 -0.68 -4.03 16 29 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.09 -0.02 8.12 -2.38 -0.02 -0.04 16 Total: 0.00 -20.98 268.59 -3.40 -24.38 By element: Atomic # 1 Polarization: -17.13 SS G_CDS: -0.92 Total: -18.05 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 3.56 Total: 5.07 kcal Atomic # 7 Polarization: -10.20 SS G_CDS: -3.51 Total: -13.70 kcal Atomic # 8 Polarization: 0.71 SS G_CDS: -3.51 Total: -2.80 kcal Atomic # 14 Polarization: 3.49 SS G_CDS: 2.20 Total: 5.69 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.23 Total: -0.59 kcal Total: -20.98 -3.40 -24.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10859624_15704122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.281 kcal (2) G-P(sol) polarization free energy of solvation -20.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds