Wall clock time and date at job start Mon Mar 8 2021 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47093 * 2 1 4 4 C 1.50706 * 109.47047 * 120.00037 * 2 1 3 5 5 C 1.37984 * 120.32371 * 245.00534 * 4 2 1 6 6 N 1.32016 * 120.89991 * 179.97438 * 5 4 2 7 7 C 1.32331 * 121.64557 * 0.02562 * 6 5 4 8 8 N 1.39140 * 119.71745 * 180.02562 * 7 6 5 9 9 C 1.46494 * 120.00119 * 359.97438 * 8 7 6 10 10 H 1.09005 * 112.85190 * 23.79656 * 9 8 7 11 11 C 1.53788 * 113.61770 * 154.99662 * 9 8 7 12 12 C 1.53782 * 87.08216 * 139.98224 * 11 9 8 13 13 H 1.08995 * 113.61824 * 89.11286 * 12 11 9 14 14 O 1.42905 * 113.61160 * 219.93872 * 12 11 9 15 15 C 1.53787 * 87.08210 * 334.56694 * 12 11 9 16 16 C 1.39341 * 120.56512 * 0.02562 * 7 6 5 17 17 F 1.35104 * 120.47316 * 180.02562 * 16 7 6 18 18 C 1.38452 * 119.05647 * 0.27083 * 16 7 6 19 19 H 0.96703 * 114.00061 * 299.99986 * 1 2 3 20 20 H 1.08995 * 109.47524 * 239.99689 * 2 1 3 21 21 H 1.48500 * 110.00146 * 178.67708 * 3 2 1 22 22 H 1.48500 * 110.00191 * 300.00152 * 3 2 1 23 23 H 1.08004 * 119.55003 * 0.02562 * 5 4 2 24 24 H 0.97005 * 120.00184 * 179.97438 * 8 7 6 25 25 H 1.09001 * 113.61372 * 254.52771 * 11 9 8 26 26 H 1.09000 * 113.61320 * 25.34700 * 11 9 8 27 27 H 0.96700 * 113.99385 * 180.02562 * 14 12 11 28 28 H 1.09002 * 113.61767 * 270.88971 * 15 12 11 29 29 H 1.08997 * 113.61576 * 139.98445 * 15 12 11 30 30 H 1.08001 * 120.75389 * 179.72916 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6381 -0.0201 2.1938 6 7 3.0829 -0.6309 3.2763 7 6 2.8721 -1.9211 3.4816 8 7 3.3588 -2.5242 4.6373 9 6 4.1014 -1.7314 5.6202 10 1 3.8674 -0.6680 5.5702 11 6 4.0466 -2.3079 7.0448 12 6 5.5299 -1.9231 7.1731 13 1 5.6879 -0.9118 7.5478 14 8 6.3171 -2.8985 7.8596 15 6 5.6095 -2.0318 5.6412 16 6 2.1670 -2.6809 2.5504 17 9 1.9524 -3.9978 2.7622 18 6 1.6938 -2.0681 1.4026 19 1 -0.3933 0.4417 0.7651 20 1 1.7924 -0.5138 -0.8899 21 1 3.5346 1.7703 0.0322 22 1 1.5615 2.4679 -1.2085 23 1 2.8292 1.0345 2.0608 24 1 3.2063 -3.4696 4.7921 25 1 3.3917 -1.7521 7.7159 26 1 3.8689 -3.3830 7.0743 27 1 7.2509 -2.6618 7.9438 28 1 5.8605 -3.0316 5.2868 29 1 6.2163 -1.2532 5.1791 30 1 1.1477 -2.6318 0.6606 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10859624_17656566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:25:25 Heat of formation + Delta-G solvation = -51.934930 kcal Electronic energy + Delta-G solvation = -17051.002794 eV Core-core repulsion = 13956.517407 eV Total energy + Delta-G solvation = -3094.485387 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.99144 -41.51362 -40.31101 -37.99945 -36.68710 -34.74975 -33.21556 -31.16870 -26.87225 -26.71171 -25.61930 -23.94779 -22.86863 -20.95291 -19.24099 -19.02881 -18.38598 -18.10528 -17.51792 -17.03967 -16.52079 -16.10381 -16.02611 -15.72504 -15.40344 -15.18237 -14.49194 -14.33886 -14.16350 -13.69753 -13.54649 -13.45892 -12.81320 -12.56856 -12.29535 -12.15643 -11.73819 -11.20223 -10.83948 -10.73264 -10.69645 -10.41763 -8.79801 -4.97133 -0.11165 0.06895 1.31944 1.67378 1.92997 2.01002 2.50257 2.99139 3.19342 3.38603 3.48421 3.49506 3.65738 3.67547 3.82935 3.85107 3.93064 4.01730 4.40979 4.45133 4.53638 4.68847 4.69846 4.74519 4.92981 4.95754 4.99064 5.13385 5.42792 5.94416 6.14294 6.79392 6.85330 6.90775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.060 4.060 3 Si 0.777 3.223 4 C -0.206 4.206 5 C 0.150 3.850 6 N -0.524 5.524 7 C 0.382 3.618 8 N -0.704 5.704 9 C 0.140 3.860 10 H 0.125 0.875 11 C -0.140 4.140 12 C 0.082 3.918 13 H 0.107 0.893 14 O -0.580 6.580 15 C -0.181 4.181 16 C -0.040 4.040 17 F -0.142 7.142 18 C -0.041 4.041 19 H 0.396 0.604 20 H 0.110 0.890 21 H -0.280 1.280 22 H -0.297 1.297 23 H 0.188 0.812 24 H 0.414 0.586 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.396 0.604 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 4.040 2.294 4.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.170 4.170 3 Si 0.682 3.318 4 C -0.212 4.212 5 C -0.007 4.007 6 N -0.241 5.241 7 C 0.144 3.856 8 N -0.336 5.336 9 C 0.035 3.965 10 H 0.143 0.857 11 C -0.178 4.178 12 C 0.022 3.978 13 H 0.125 0.875 14 O -0.389 6.389 15 C -0.221 4.221 16 C -0.067 4.067 17 F -0.121 7.121 18 C -0.067 4.067 19 H 0.246 0.754 20 H 0.128 0.872 21 H -0.207 1.207 22 H -0.225 1.225 23 H 0.204 0.796 24 H 0.252 0.748 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.246 0.754 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.178 4.531 2.149 5.151 hybrid contribution 0.093 -1.767 -0.926 1.997 sum 1.271 2.764 1.223 3.279 Atomic orbital electron populations 1.86484 1.17224 1.82171 1.50537 1.25020 0.85241 1.10769 0.96017 0.93833 0.77956 0.74622 0.85405 1.21005 1.05507 0.94173 1.00483 1.22732 0.90727 1.00241 0.86963 1.67322 1.25502 1.07174 1.24110 1.18591 0.90416 0.89250 0.87375 1.44625 1.58658 1.12067 1.18257 1.22250 0.90538 0.97200 0.86553 0.85714 1.23494 0.95901 1.02521 0.95903 1.23169 0.91463 0.92869 0.90259 0.87542 1.86480 1.25744 1.47482 1.79156 1.24182 0.97421 1.02654 0.97825 1.18172 1.09901 0.79425 0.99157 1.91466 1.93828 1.31804 1.95032 1.21453 0.95340 0.95071 0.94826 0.75383 0.87242 1.20714 1.22484 0.79585 0.74773 0.88994 0.89627 0.75362 0.90380 0.90305 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.94 12.85 -148.98 -1.91 -0.98 16 2 C -0.06 0.16 2.82 71.24 0.20 0.36 16 3 Si 0.78 -3.74 29.83 68.60 2.05 -1.69 16 4 C -0.21 0.21 5.36 -19.76 -0.11 0.10 16 5 C 0.15 -0.21 9.84 84.60 0.83 0.62 16 6 N -0.52 -1.33 9.13 -193.03 -1.76 -3.09 16 7 C 0.38 1.44 7.49 133.09 1.00 2.44 16 8 N -0.70 -0.95 5.51 -321.78 -1.77 -2.72 16 9 C 0.14 -0.16 4.27 45.52 0.19 0.04 16 10 H 0.13 -0.15 7.41 -2.38 -0.02 -0.17 16 11 C -0.14 0.26 7.66 31.12 0.24 0.50 16 12 C 0.08 -0.21 5.21 31.12 0.16 -0.04 16 13 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 14 O -0.58 -0.28 13.67 -148.98 -2.04 -2.32 16 15 C -0.18 0.24 7.71 31.12 0.24 0.48 16 16 C -0.04 -0.18 7.35 22.59 0.17 -0.01 16 17 F -0.14 -0.89 16.65 44.97 0.75 -0.14 16 18 C -0.04 -0.08 9.83 22.48 0.22 0.14 16 19 H 0.40 -3.86 8.70 -74.06 -0.64 -4.50 16 20 H 0.11 -0.19 7.96 -2.39 -0.02 -0.21 16 21 H -0.28 0.08 7.11 99.48 0.71 0.78 16 22 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 23 H 0.19 -1.36 4.91 -2.91 -0.01 -1.38 16 24 H 0.41 0.14 8.20 -92.70 -0.76 -0.62 16 25 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H 0.09 0.00 8.12 -2.39 -0.02 -0.02 16 27 H 0.40 -2.97 9.12 -74.06 -0.68 -3.65 16 28 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.15 0.06 8.06 -2.91 -0.02 0.03 16 Total: 0.00 -14.96 264.41 -2.38 -17.34 By element: Atomic # 1 Polarization: -10.19 SS G_CDS: -0.84 Total: -11.03 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 3.15 Total: 4.63 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: -3.53 Total: -5.81 kcal Atomic # 8 Polarization: 0.66 SS G_CDS: -3.95 Total: -3.29 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.75 Total: -0.14 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.05 Total: -1.69 kcal Total: -14.96 -2.38 -17.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10859624_17656566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.595 kcal (2) G-P(sol) polarization free energy of solvation -14.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds