Wall clock time and date at job start Mon Mar 8 2021 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.47285 * 2 1 4 4 C 1.50696 * 109.47085 * 120.00388 * 2 1 3 5 5 C 1.38606 * 120.72128 * 64.99870 * 4 2 1 6 6 N 1.32279 * 119.19607 * 180.02562 * 5 4 2 7 7 C 1.32494 * 120.73978 * 359.97438 * 6 5 4 8 8 N 1.38405 * 119.21739 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00241 * 179.72746 * 8 7 6 10 10 H 1.09002 * 112.84888 * 336.19145 * 9 8 7 11 11 C 1.53786 * 113.61854 * 107.50109 * 9 8 7 12 12 C 1.53781 * 87.07959 * 89.11701 * 11 9 8 13 13 H 1.09006 * 113.61519 * 270.88270 * 12 11 9 14 14 C 1.50697 * 113.68993 * 139.99628 * 12 11 9 15 15 C 1.38248 * 119.96936 * 322.46214 * 14 12 11 16 16 C 1.38286 * 120.10906 * 180.02562 * 15 14 12 17 17 C 1.38121 * 120.05690 * 359.97438 * 16 15 14 18 18 C 1.38752 * 119.94614 * 359.97438 * 17 16 15 19 19 O 1.35900 * 120.05758 * 180.02562 * 18 17 16 20 20 C 1.42898 * 116.99891 * 359.97438 * 19 18 17 21 21 F 1.39903 * 109.47187 * 60.00363 * 20 19 18 22 22 F 1.39903 * 109.46932 * 180.02562 * 20 19 18 23 23 F 1.39899 * 109.47269 * 300.00131 * 20 19 18 24 24 C 1.38165 * 119.97287 * 142.18517 * 14 12 11 25 25 C 1.53779 * 87.08411 * 25.43382 * 12 11 9 26 26 N 1.32494 * 121.56775 * 0.27451 * 7 6 5 27 27 C 1.32277 * 120.73841 * 359.44675 * 26 7 6 28 28 H 0.96701 * 114.00018 * 59.99846 * 1 2 3 29 29 H 1.08997 * 109.47084 * 240.00155 * 2 1 3 30 30 H 1.48507 * 109.99764 * 59.99890 * 3 2 1 31 31 H 1.48502 * 110.00077 * 181.31856 * 3 2 1 32 32 H 1.07993 * 120.40359 * 0.02562 * 5 4 2 33 33 H 0.97005 * 119.99811 * 0.02562 * 8 7 6 34 34 H 1.09001 * 113.61511 * 203.66497 * 11 9 8 35 35 H 1.09003 * 113.60825 * 334.56960 * 11 9 8 36 36 H 1.07998 * 119.94500 * 359.97438 * 15 14 12 37 37 H 1.08001 * 119.97389 * 179.97438 * 16 15 14 38 38 H 1.08002 * 120.02772 * 180.02562 * 17 16 15 39 39 H 1.08000 * 120.03066 * 0.02562 * 24 14 12 40 40 H 1.09003 * 113.61795 * 220.01939 * 25 12 11 41 41 H 1.08997 * 113.61636 * 89.11348 * 25 12 11 42 42 H 1.08000 * 120.40172 * 180.25460 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6925 -2.0634 1.4139 6 7 2.1469 -2.6566 2.5054 7 6 2.8232 -1.9724 3.4164 8 7 3.2846 -2.6249 4.5465 9 6 4.0394 -1.8864 5.5619 10 1 4.5229 -0.9941 5.1641 11 6 3.2483 -1.6355 6.8565 12 6 3.7916 -2.9843 7.3569 13 1 3.1622 -3.8340 7.0922 14 6 4.1831 -2.9770 8.8121 15 6 4.7805 -1.8576 9.3610 16 6 5.1414 -1.8480 10.6959 17 6 4.9052 -2.9571 11.4844 18 6 4.3049 -4.0815 10.9361 19 8 4.0710 -5.1739 11.7100 20 6 4.4696 -5.0958 13.0800 21 9 3.7928 -4.0419 13.7032 22 9 4.1580 -6.2972 13.7256 23 9 5.8487 -4.8720 13.1525 24 6 3.9396 -4.0870 9.5980 25 6 4.9762 -2.7732 6.3992 26 7 3.0642 -0.6775 3.2737 27 6 2.6425 -0.0252 2.2029 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 1.5615 2.4678 1.2086 31 1 3.5346 1.7702 -0.0321 32 1 1.1422 -2.6265 0.6747 33 1 3.1118 -3.5722 4.6641 34 1 3.6076 -0.7805 7.4291 35 1 2.1678 -1.6263 6.7129 36 1 4.9663 -0.9895 8.7460 37 1 5.6082 -0.9724 11.1223 38 1 5.1869 -2.9490 12.5270 39 1 3.4692 -4.9598 9.1697 40 1 5.2907 -3.6823 5.8866 41 1 5.8079 -2.2291 6.8468 42 1 2.8456 1.0295 2.0902 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860232_12175864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:35:15 Heat of formation + Delta-G solvation = -96.723051 kcal Electronic energy + Delta-G solvation = -31704.434811 eV Core-core repulsion = 26624.155984 eV Total energy + Delta-G solvation = -5080.278827 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.113 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -51.57730 -49.29497 -49.17399 -42.28384 -41.62223 -40.53454 -38.52885 -37.80651 -35.61112 -34.87603 -32.75999 -31.95584 -31.09938 -27.34491 -26.97388 -26.71335 -26.20107 -25.55730 -23.95805 -23.28900 -22.91662 -21.07676 -20.29659 -20.16815 -19.94142 -19.62190 -18.57824 -18.24350 -17.95748 -17.18767 -16.75942 -16.65506 -16.40621 -16.35863 -16.17933 -15.98773 -15.93237 -15.66856 -15.64162 -15.58063 -15.31583 -15.28848 -15.19563 -14.98188 -14.82514 -14.48518 -14.29399 -14.04747 -14.02282 -13.56208 -13.19299 -13.07998 -12.82978 -12.73662 -12.33526 -12.04118 -12.02331 -11.86375 -11.78155 -11.37416 -11.19028 -10.58906 -10.02333 -9.97077 -9.62936 -9.20136 -4.93660 -0.12007 -0.00015 0.06037 0.18420 0.34207 1.32645 1.66631 1.68477 1.69782 1.97701 2.45364 2.62977 2.63625 2.86048 2.94292 3.38746 3.43196 3.47732 3.51593 3.56678 3.59904 3.67801 3.84166 3.88689 3.89856 4.01164 4.10814 4.15364 4.23222 4.37709 4.54008 4.56575 4.65634 4.73023 4.77831 4.83731 4.94101 4.96614 4.98291 5.05106 5.20994 5.27029 5.31651 5.50840 5.67995 5.84381 5.91518 6.28938 6.96860 7.13410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.054 4.054 3 Si 0.769 3.231 4 C -0.253 4.253 5 C 0.218 3.782 6 N -0.584 5.584 7 C 0.554 3.446 8 N -0.672 5.672 9 C 0.132 3.868 10 H 0.101 0.899 11 C -0.139 4.139 12 C -0.069 4.069 13 H 0.105 0.895 14 C -0.034 4.034 15 C -0.132 4.132 16 C -0.077 4.077 17 C -0.207 4.207 18 C 0.085 3.915 19 O -0.321 6.321 20 C 0.608 3.392 21 F -0.165 7.165 22 F -0.132 7.132 23 F -0.165 7.165 24 C -0.131 4.131 25 C -0.123 4.123 26 N -0.576 5.576 27 C 0.176 3.824 28 H 0.405 0.595 29 H 0.103 0.897 30 H -0.295 1.295 31 H -0.286 1.286 32 H 0.195 0.805 33 H 0.420 0.580 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.133 0.867 39 H 0.144 0.856 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 3.672 -6.220 7.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.166 4.166 3 Si 0.675 3.325 4 C -0.261 4.261 5 C 0.051 3.949 6 N -0.306 5.306 7 C 0.197 3.803 8 N -0.308 5.308 9 C 0.026 3.974 10 H 0.119 0.881 11 C -0.178 4.178 12 C -0.087 4.087 13 H 0.123 0.877 14 C -0.034 4.034 15 C -0.150 4.150 16 C -0.095 4.095 17 C -0.225 4.225 18 C 0.043 3.957 19 O -0.241 6.241 20 C 0.517 3.483 21 F -0.147 7.147 22 F -0.114 7.114 23 F -0.147 7.147 24 C -0.149 4.149 25 C -0.161 4.161 26 N -0.299 5.299 27 C 0.009 3.991 28 H 0.257 0.743 29 H 0.120 0.880 30 H -0.223 1.223 31 H -0.213 1.213 32 H 0.211 0.789 33 H 0.259 0.741 34 H 0.127 0.873 35 H 0.079 0.921 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.102 0.898 41 H 0.131 0.869 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.360 3.386 -4.276 5.621 hybrid contribution -0.311 -0.628 0.329 0.774 sum 1.049 2.758 -3.948 4.929 Atomic orbital electron populations 1.86440 1.17177 1.82415 1.51586 1.24420 0.85833 1.10403 0.95914 0.94125 0.77552 0.75671 0.85118 1.21072 1.07203 0.97175 1.00641 1.23288 0.88666 0.91343 0.91645 1.68028 1.17057 1.40468 1.05032 1.19595 0.87543 0.85616 0.87542 1.43880 1.57739 1.12062 1.17134 1.21893 0.92769 0.96057 0.86665 0.88144 1.23606 1.00386 0.97550 0.96263 1.21617 0.98524 0.99411 0.89141 0.87683 1.19648 0.96110 0.92394 0.95258 1.21377 0.99255 0.98953 0.95369 1.21269 0.97021 0.97570 0.93670 1.21695 1.04541 0.94457 1.01827 1.18940 1.00484 0.85074 0.91192 1.86400 1.78986 1.40239 1.18479 1.19266 0.74832 0.74599 0.79576 1.93306 1.80350 1.57787 1.83276 1.93319 1.93008 1.45333 1.79719 1.93305 1.31107 1.94288 1.95957 1.20507 1.03898 1.00912 0.89614 1.23430 0.96596 1.00737 0.95376 1.67878 1.27956 1.08758 1.25319 1.22877 0.89742 0.99335 0.87128 0.74298 0.87957 1.22295 1.21344 0.78867 0.74096 0.87327 0.92067 0.82908 0.82767 0.84942 0.83840 0.89847 0.86920 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.80 12.82 -148.98 -1.91 -0.11 16 2 C -0.05 0.19 2.82 71.23 0.20 0.39 16 3 Si 0.77 -3.45 29.92 68.60 2.05 -1.40 16 4 C -0.25 -0.89 5.40 -19.69 -0.11 -0.99 16 5 C 0.22 0.90 10.99 84.71 0.93 1.83 16 6 N -0.58 -4.47 10.46 -197.99 -2.07 -6.54 16 7 C 0.55 4.19 8.43 261.49 2.20 6.39 16 8 N -0.67 -1.32 5.41 -327.91 -1.77 -3.10 16 9 C 0.13 -0.18 4.33 45.52 0.20 0.02 16 10 H 0.10 0.10 7.37 -2.39 -0.02 0.08 16 11 C -0.14 0.36 7.25 31.12 0.23 0.59 16 12 C -0.07 0.28 3.85 -11.02 -0.04 0.23 16 13 H 0.11 -0.48 8.09 -2.38 -0.02 -0.50 16 14 C -0.03 0.05 5.29 -19.88 -0.11 -0.06 16 15 C -0.13 0.37 8.61 22.28 0.19 0.56 16 16 C -0.08 0.11 10.04 22.25 0.22 0.33 16 17 C -0.21 -0.49 8.26 22.36 0.18 -0.31 16 18 C 0.08 0.36 6.48 22.51 0.15 0.51 16 19 O -0.32 -1.80 10.37 -92.42 -0.96 -2.76 16 20 C 0.61 2.45 3.42 113.37 0.39 2.84 16 21 F -0.17 -0.67 15.56 44.97 0.70 0.03 16 22 F -0.13 -0.58 17.53 44.97 0.79 0.21 16 23 F -0.16 -0.63 15.56 44.97 0.70 0.07 16 24 C -0.13 -0.21 9.65 22.37 0.22 0.01 16 25 C -0.12 0.63 7.29 31.12 0.23 0.86 16 26 N -0.58 -4.95 9.13 -197.98 -1.81 -6.76 16 27 C 0.18 1.13 9.92 84.71 0.84 1.97 16 28 H 0.41 -5.53 8.74 -74.06 -0.65 -6.18 16 29 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 30 H -0.30 -0.93 7.06 99.48 0.70 -0.23 16 31 H -0.29 -0.29 7.11 99.48 0.71 0.42 16 32 H 0.19 -0.30 8.06 -2.91 -0.02 -0.33 16 33 H 0.42 -0.26 8.82 -92.70 -0.82 -1.08 16 34 H 0.11 -0.52 6.32 -2.39 -0.02 -0.54 16 35 H 0.06 0.05 8.14 -2.39 -0.02 0.04 16 36 H 0.15 -1.11 6.66 -2.91 -0.02 -1.13 16 37 H 0.15 -0.92 8.06 -2.91 -0.02 -0.94 16 38 H 0.13 0.23 5.10 -2.91 -0.01 0.21 16 39 H 0.14 -0.08 8.05 -2.91 -0.02 -0.10 16 40 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.11 -0.77 7.72 -2.39 -0.02 -0.79 16 42 H 0.16 0.67 5.04 -2.91 -0.01 0.65 16 Total: 0.00 -18.28 365.25 1.34 -16.94 By element: Atomic # 1 Polarization: -11.46 SS G_CDS: -0.30 Total: -11.76 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 5.92 Total: 15.18 kcal Atomic # 7 Polarization: -10.74 SS G_CDS: -5.65 Total: -16.40 kcal Atomic # 8 Polarization: -0.01 SS G_CDS: -2.87 Total: -2.88 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 2.19 Total: 0.31 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.05 Total: -1.40 kcal Total: -18.28 1.34 -16.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860232_12175864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.779 kcal (2) G-P(sol) polarization free energy of solvation -18.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds