Wall clock time and date at job start Mon Mar 8 2021 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86309 * 109.46659 * 2 1 4 4 C 1.50695 * 109.47214 * 240.00383 * 2 1 3 5 5 C 1.38017 * 120.33881 * 120.01806 * 4 2 1 6 6 N 1.31974 * 120.85711 * 179.70093 * 5 4 2 7 7 C 1.32397 * 121.62211 * 0.56641 * 6 5 4 8 8 N 1.39002 * 119.70384 * 179.71312 * 7 6 5 9 9 C 1.46501 * 119.99515 * 179.72893 * 8 7 6 10 10 H 1.08993 * 112.91182 * 336.24797 * 9 8 7 11 11 C 1.53778 * 113.61560 * 107.50148 * 9 8 7 12 12 C 1.53778 * 87.08449 * 89.11214 * 11 9 8 13 13 H 1.08998 * 113.61879 * 270.88747 * 12 11 9 14 14 C 1.50698 * 113.69240 * 139.98944 * 12 11 9 15 15 C 1.38244 * 119.97225 * 322.46970 * 14 12 11 16 16 C 1.38289 * 120.10897 * 179.97438 * 15 14 12 17 17 C 1.38120 * 120.05907 * 359.97438 * 16 15 14 18 18 C 1.38762 * 119.94308 * 359.97438 * 17 16 15 19 19 O 1.35897 * 120.05425 * 180.02562 * 18 17 16 20 20 C 1.42902 * 117.00191 * 0.02562 * 19 18 17 21 21 F 1.39902 * 109.46986 * 59.99366 * 20 19 18 22 22 F 1.39903 * 109.47026 * 179.97438 * 20 19 18 23 23 F 1.39902 * 109.46908 * 299.99583 * 20 19 18 24 24 C 1.38174 * 119.97159 * 142.19012 * 14 12 11 25 25 C 1.53784 * 113.61123 * 204.99739 * 9 8 7 26 26 C 1.39140 * 120.58807 * 359.43385 * 7 6 5 27 27 C 1.38303 * 119.09314 * 0.27860 * 26 7 6 28 28 H 0.96695 * 114.00475 * 59.99734 * 1 2 3 29 29 H 1.08992 * 109.47238 * 119.99395 * 2 1 3 30 30 H 1.48493 * 110.00044 * 60.00141 * 3 2 1 31 31 H 1.48503 * 109.99709 * 181.31963 * 3 2 1 32 32 H 1.08002 * 119.56996 * 359.97438 * 5 4 2 33 33 H 0.96998 * 120.00226 * 359.72363 * 8 7 6 34 34 H 1.08999 * 113.61526 * 334.56550 * 11 9 8 35 35 H 1.08999 * 113.69218 * 203.67174 * 11 9 8 36 36 H 1.07992 * 119.94489 * 359.97438 * 15 14 12 37 37 H 1.08001 * 119.97398 * 179.97438 * 16 15 14 38 38 H 1.08000 * 120.03335 * 179.97438 * 17 16 15 39 39 H 1.08004 * 120.02602 * 0.02562 * 24 14 12 40 40 H 1.09004 * 113.61451 * 156.33708 * 25 9 8 41 41 H 1.08994 * 113.61477 * 25.43010 * 25 9 8 42 42 H 1.08000 * 120.45225 * 180.29526 * 26 7 6 43 43 H 1.08004 * 120.74507 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7256 -0.0463 -2.1433 6 7 3.1759 -0.6601 -3.2213 7 6 2.8779 -1.9248 -3.4756 8 7 3.3692 -2.5303 -4.6264 9 6 3.0483 -3.9311 -4.9110 10 1 2.7942 -4.4985 -4.0158 11 6 2.0429 -4.1114 -6.0606 12 6 3.2527 -4.1402 -7.0095 13 1 3.5474 -3.1552 -7.3713 14 6 3.1314 -5.1575 -8.1146 15 6 2.5473 -6.3848 -7.8625 16 6 2.4341 -7.3202 -8.8747 17 6 2.9041 -7.0300 -10.1407 18 6 3.4898 -5.7984 -10.3966 19 8 3.9525 -5.5103 -11.6414 20 6 3.8028 -6.5220 -12.6395 21 9 2.4455 -6.8192 -12.8023 22 9 4.3279 -6.0622 -13.8520 23 9 4.4881 -7.6749 -12.2413 24 6 3.5989 -4.8605 -9.3805 25 6 4.0820 -4.6293 -5.8103 26 6 2.0821 -2.6549 -2.5983 27 6 1.6001 -2.0399 -1.4571 28 1 -0.3934 0.4417 -0.7650 29 1 1.7923 -0.5137 0.8900 30 1 1.5614 2.4679 1.2084 31 1 3.5345 1.7705 -0.0321 32 1 2.9855 0.9877 -1.9709 33 1 3.9243 -2.0253 -5.2409 34 1 1.3913 -3.2505 -6.2099 35 1 1.4967 -5.0538 -6.0209 36 1 2.1788 -6.6135 -6.8735 37 1 1.9777 -8.2785 -8.6753 38 1 2.8158 -7.7610 -10.9308 39 1 4.0514 -3.8999 -9.5780 40 1 4.0941 -5.7138 -5.7011 41 1 5.0766 -4.1865 -5.7575 42 1 1.8443 -3.6878 -2.8055 43 1 0.9798 -2.5813 -0.7582 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860232_13915762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:35:20 Heat of formation + Delta-G solvation = -114.964738 kcal Electronic energy + Delta-G solvation = -31538.723692 eV Core-core repulsion = 26523.079757 eV Total energy + Delta-G solvation = -5015.643935 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.118 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -51.55903 -49.27827 -49.15555 -41.77678 -41.31284 -40.37551 -38.48289 -37.75451 -35.27115 -33.39088 -32.34319 -31.52099 -30.70617 -27.29470 -26.76330 -26.62366 -25.68764 -24.72569 -23.91624 -23.13255 -22.51130 -20.88066 -20.27835 -20.13051 -19.73876 -18.84559 -18.40391 -17.87475 -17.36842 -17.14166 -16.58820 -16.48111 -16.36929 -16.18441 -15.99466 -15.94059 -15.84457 -15.63200 -15.56397 -15.40737 -15.28051 -15.23456 -15.14888 -14.78904 -14.47343 -14.33628 -14.16036 -13.99491 -13.90955 -13.44483 -13.31700 -13.00172 -12.76953 -12.67365 -12.34285 -12.11405 -11.83051 -11.76956 -11.26409 -11.00963 -10.71891 -10.39177 -10.36667 -9.92686 -9.58212 -8.66529 -4.98317 0.10211 0.22027 0.25064 0.36594 0.42799 1.35460 1.64176 1.71981 1.97934 2.08975 2.49798 2.65591 2.84824 2.88265 3.45971 3.55736 3.58129 3.60441 3.64430 3.72354 3.80944 3.88163 3.95032 4.02260 4.06612 4.12333 4.19178 4.27524 4.38650 4.43924 4.52801 4.62721 4.78328 4.81704 4.85998 4.87994 5.00203 5.02072 5.04988 5.09529 5.19383 5.28174 5.36191 5.36611 5.54175 5.61456 5.88762 6.09111 6.56013 6.81244 7.16890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.052 4.052 3 Si 0.763 3.237 4 C -0.237 4.237 5 C 0.144 3.856 6 N -0.566 5.566 7 C 0.397 3.603 8 N -0.703 5.703 9 C 0.128 3.872 10 H 0.112 0.888 11 C -0.141 4.141 12 C -0.073 4.073 13 H 0.099 0.901 14 C -0.033 4.033 15 C -0.130 4.130 16 C -0.078 4.078 17 C -0.209 4.209 18 C 0.083 3.917 19 O -0.322 6.322 20 C 0.608 3.392 21 F -0.165 7.165 22 F -0.133 7.133 23 F -0.165 7.165 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.239 4.239 27 C -0.013 4.013 28 H 0.394 0.606 29 H 0.107 0.893 30 H -0.297 1.297 31 H -0.288 1.288 32 H 0.165 0.835 33 H 0.406 0.594 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.154 0.846 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -2.202 0.939 3.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.164 4.164 3 Si 0.670 3.330 4 C -0.242 4.242 5 C -0.012 4.012 6 N -0.284 5.284 7 C 0.161 3.839 8 N -0.334 5.334 9 C 0.022 3.978 10 H 0.129 0.871 11 C -0.180 4.180 12 C -0.091 4.091 13 H 0.118 0.882 14 C -0.034 4.034 15 C -0.148 4.148 16 C -0.096 4.096 17 C -0.227 4.227 18 C 0.042 3.958 19 O -0.242 6.242 20 C 0.517 3.483 21 F -0.147 7.147 22 F -0.114 7.114 23 F -0.147 7.147 24 C -0.152 4.152 25 C -0.166 4.166 26 C -0.264 4.264 27 C -0.039 4.039 28 H 0.244 0.756 29 H 0.125 0.875 30 H -0.225 1.225 31 H -0.215 1.215 32 H 0.182 0.818 33 H 0.242 0.758 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.131 0.869 41 H 0.094 0.906 42 H 0.172 0.828 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.975 -1.536 1.186 2.172 hybrid contribution 0.019 -0.916 -0.206 0.939 sum -0.956 -2.452 0.980 2.809 Atomic orbital electron populations 1.86450 1.17367 1.82085 1.50494 1.24808 0.85062 1.09927 0.96582 0.93871 0.77907 0.76075 0.85140 1.21036 1.05848 0.96963 1.00384 1.22425 0.91701 0.99168 0.87948 1.67129 1.28140 1.10095 1.23019 1.18618 0.89500 0.88407 0.87351 1.44270 1.55484 1.11737 1.21925 1.21961 0.96629 0.80839 0.98336 0.87063 1.23664 0.96076 1.03852 0.94383 1.21617 0.98646 0.97227 0.91594 0.88233 1.19706 0.95493 0.95463 0.92700 1.21396 0.99864 0.92652 1.00853 1.21289 0.96620 1.00642 0.91027 1.21695 1.04305 0.95795 1.00919 1.18966 0.98947 0.96227 0.81688 1.86401 1.78508 1.40148 1.19158 1.19267 0.74626 0.75963 0.78416 1.93304 1.32985 1.92966 1.95451 1.93318 1.86660 1.89225 1.42232 1.93304 1.80078 1.50786 1.90513 1.20524 1.04280 0.99474 0.90940 1.23435 0.98084 1.02207 0.92853 1.21714 1.04955 1.02613 0.97068 1.21403 0.93928 0.93280 0.95256 0.75616 0.87525 1.22483 1.21480 0.81821 0.75772 0.91426 0.86930 0.82395 0.82750 0.85112 0.84138 0.86892 0.90557 0.82822 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.32 12.78 -148.98 -1.90 -1.58 16 2 C -0.05 0.05 2.84 71.23 0.20 0.25 16 3 Si 0.76 -1.40 29.82 68.60 2.05 0.65 16 4 C -0.24 -0.07 5.40 -19.76 -0.11 -0.17 16 5 C 0.14 0.26 9.84 84.62 0.83 1.10 16 6 N -0.57 -2.65 10.39 -193.26 -2.01 -4.66 16 7 C 0.40 0.61 7.65 133.07 1.02 1.63 16 8 N -0.70 2.07 5.44 -322.05 -1.75 0.32 16 9 C 0.13 -1.00 4.11 45.52 0.19 -0.81 16 10 H 0.11 -1.07 6.10 -2.39 -0.01 -1.09 16 11 C -0.14 1.15 7.25 31.12 0.23 1.38 16 12 C -0.07 0.50 3.85 -11.01 -0.04 0.46 16 13 H 0.10 -0.63 8.09 -2.39 -0.02 -0.65 16 14 C -0.03 0.12 5.29 -19.88 -0.11 0.02 16 15 C -0.13 0.71 8.61 22.28 0.19 0.90 16 16 C -0.08 0.26 10.04 22.25 0.22 0.48 16 17 C -0.21 -0.23 8.26 22.37 0.18 -0.04 16 18 C 0.08 0.26 6.48 22.51 0.15 0.41 16 19 O -0.32 -1.57 10.37 -92.39 -0.96 -2.53 16 20 C 0.61 2.03 3.42 113.37 0.39 2.42 16 21 F -0.17 -0.53 15.56 44.97 0.70 0.17 16 22 F -0.13 -0.51 17.53 44.97 0.79 0.28 16 23 F -0.16 -0.52 15.56 44.97 0.70 0.18 16 24 C -0.13 -0.04 9.65 22.37 0.22 0.18 16 25 C -0.13 1.10 7.29 31.12 0.23 1.32 16 26 C -0.24 0.24 9.29 22.50 0.21 0.45 16 27 C -0.01 0.00 9.77 22.44 0.22 0.22 16 28 H 0.39 -3.21 8.70 -74.06 -0.64 -3.85 16 29 H 0.11 -0.01 7.96 -2.39 -0.02 -0.03 16 30 H -0.30 -1.62 7.11 99.48 0.71 -0.91 16 31 H -0.29 -0.96 7.11 99.48 0.71 -0.25 16 32 H 0.17 -0.30 4.88 -2.91 -0.01 -0.32 16 33 H 0.41 -1.22 8.82 -92.71 -0.82 -2.03 16 34 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.11 -1.24 6.32 -2.39 -0.02 -1.26 16 36 H 0.16 -1.75 6.66 -2.91 -0.02 -1.77 16 37 H 0.15 -1.22 8.06 -2.91 -0.02 -1.24 16 38 H 0.13 0.09 5.10 -2.91 -0.01 0.08 16 39 H 0.14 -0.19 8.05 -2.91 -0.02 -0.22 16 40 H 0.11 -1.19 7.72 -2.39 -0.02 -1.21 16 41 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.15 -0.89 6.03 -2.91 -0.02 -0.91 16 43 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -15.49 367.55 1.52 -13.97 By element: Atomic # 1 Polarization: -16.69 SS G_CDS: -0.31 Total: -17.00 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 4.22 Total: 10.20 kcal Atomic # 7 Polarization: -0.58 SS G_CDS: -3.76 Total: -4.34 kcal Atomic # 8 Polarization: -1.25 SS G_CDS: -2.86 Total: -4.11 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 2.19 Total: 0.63 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: 2.05 Total: 0.65 kcal Total: -15.49 1.52 -13.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860232_13915762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.994 kcal (2) G-P(sol) polarization free energy of solvation -15.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds