Wall clock time and date at job start Mon Mar 8 2021 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47027 * 2 1 4 4 C 1.50693 * 109.47209 * 239.99842 * 2 1 3 5 5 C 1.33335 * 125.95195 * 300.02213 * 4 2 1 6 6 N 1.32119 * 114.57779 * 179.75610 * 5 4 2 7 7 C 1.29684 * 116.86898 * 0.47043 * 6 5 4 8 8 N 1.38610 * 124.95060 * 179.81537 * 7 6 5 9 9 C 1.46494 * 120.00312 * 359.69599 * 8 7 6 10 10 H 1.09004 * 112.90641 * 336.25719 * 9 8 7 11 11 C 1.53959 * 113.53458 * 107.50345 * 9 8 7 12 12 C 1.53778 * 87.01729 * 89.19540 * 11 9 8 13 13 H 1.09002 * 113.60980 * 270.76919 * 12 11 9 14 14 C 1.50699 * 113.61775 * 139.95288 * 12 11 9 15 15 C 1.38245 * 119.96768 * 320.86085 * 14 12 11 16 16 C 1.38290 * 120.10982 * 179.97438 * 15 14 12 17 17 C 1.38126 * 120.05768 * 0.02562 * 16 15 14 18 18 C 1.38749 * 119.94135 * 0.02562 * 17 16 15 19 19 O 1.35901 * 120.05761 * 179.97438 * 18 17 16 20 20 C 1.42904 * 116.99755 * 0.02801 * 19 18 17 21 21 F 1.39905 * 109.47025 * 59.99334 * 20 19 18 22 22 F 1.39892 * 109.46988 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.46525 * 299.99481 * 20 19 18 24 24 C 1.38165 * 119.97587 * 140.88011 * 14 12 11 25 25 C 1.53780 * 113.62091 * 205.00243 * 9 8 7 26 26 S 1.70963 * 110.10092 * 359.55509 * 7 6 5 27 27 H 0.96705 * 114.00189 * 60.00445 * 1 2 3 28 28 H 1.08999 * 109.46940 * 119.99864 * 2 1 3 29 29 H 1.48496 * 110.00300 * 59.99957 * 3 2 1 30 30 H 1.48503 * 109.99988 * 181.31822 * 3 2 1 31 31 H 1.07997 * 122.70667 * 0.02562 * 5 4 2 32 32 H 0.97003 * 119.99839 * 179.69902 * 8 7 6 33 33 H 1.08994 * 113.66520 * 334.66605 * 11 9 8 34 34 H 1.09003 * 113.61402 * 203.71221 * 11 9 8 35 35 H 1.07995 * 119.94685 * 359.72573 * 15 14 12 36 36 H 1.08005 * 119.97140 * 179.97438 * 16 15 14 37 37 H 1.07998 * 120.03163 * 179.97438 * 17 16 15 38 38 H 1.08001 * 120.02533 * 359.97438 * 24 14 12 39 39 H 1.08993 * 113.61394 * 156.33640 * 25 9 8 40 40 H 1.08994 * 113.68427 * 25.44187 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6831 -1.9788 -1.5581 6 7 2.2336 -2.3708 -2.6934 7 6 2.9428 -1.4944 -3.3342 8 7 3.5960 -1.7258 -4.5347 9 6 3.5179 -3.0440 -5.1689 10 1 3.2971 -3.8430 -4.4610 11 6 2.6301 -3.0697 -6.4264 12 6 3.8910 -2.7020 -7.2262 13 1 4.0522 -1.6279 -7.3178 14 6 4.0022 -3.4248 -8.5439 15 6 3.6302 -4.7530 -8.6365 16 6 3.7305 -5.4190 -9.8444 17 6 4.2035 -4.7584 -10.9614 18 6 4.5786 -3.4256 -10.8708 19 8 5.0447 -2.7735 -11.9682 20 6 5.1217 -3.5216 -13.1833 21 9 3.8461 -3.9788 -13.5311 22 9 5.6178 -2.7035 -14.2039 23 9 5.9763 -4.6148 -13.0044 24 6 4.4763 -2.7596 -9.6583 25 6 4.7054 -3.3531 -6.0959 26 16 2.9489 -0.0099 -2.4863 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5138 0.8900 29 1 1.5614 2.4679 1.2084 30 1 3.5345 1.7703 -0.0321 31 1 1.0773 -2.6315 -0.9472 32 1 4.1047 -1.0148 -4.9549 33 1 1.8645 -2.2940 -6.4373 34 1 2.2360 -4.0581 -6.6626 35 1 3.2643 -5.2725 -7.7633 36 1 3.4396 -6.4568 -9.9141 37 1 4.2821 -5.2790 -11.9043 38 1 4.7668 -1.7220 -9.5854 39 1 4.8797 -4.4191 -6.2414 40 1 5.6134 -2.8065 -5.8413 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860232_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:35:24 Heat of formation + Delta-G solvation = -108.478617 kcal Electronic energy + Delta-G solvation = -30011.020017 eV Core-core repulsion = 25084.809588 eV Total energy + Delta-G solvation = -4926.210429 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.075 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -51.54961 -49.26915 -49.14684 -41.67682 -40.91124 -40.20795 -38.44358 -37.76218 -35.18840 -32.31397 -31.46600 -30.88554 -27.29528 -26.90285 -26.59147 -26.06475 -24.50533 -23.89432 -23.07241 -21.58008 -20.63189 -20.26804 -20.14993 -19.74839 -19.40827 -18.13854 -17.88900 -17.14962 -16.98501 -16.68002 -16.46908 -16.35804 -16.18735 -15.91442 -15.83057 -15.71184 -15.61462 -15.55259 -15.41731 -15.25845 -15.24374 -15.02709 -14.85477 -14.46073 -14.21878 -14.01810 -13.95463 -13.47312 -13.02067 -12.92465 -12.75904 -12.66984 -12.45231 -12.02584 -11.86972 -11.77906 -11.28291 -11.04705 -10.77172 -10.26775 -10.15122 -9.92382 -9.58322 -8.72356 -5.10355 -0.05011 0.02785 0.10277 0.22668 0.37342 0.67720 1.27813 1.58334 1.73055 1.89390 1.98758 2.17072 2.49634 2.66636 2.88968 3.43999 3.51415 3.57320 3.60611 3.70505 3.72773 3.89513 3.94367 3.96737 4.06402 4.19974 4.29480 4.43130 4.49412 4.64584 4.72952 4.80524 4.83062 4.87663 4.97693 5.00659 5.06835 5.09668 5.24083 5.30817 5.35953 5.56618 5.88455 5.90751 6.18025 6.73594 7.02538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.013 4.013 3 Si 0.729 3.271 4 C -0.310 4.310 5 C 0.104 3.896 6 N -0.575 5.575 7 C 0.318 3.682 8 N -0.667 5.667 9 C 0.135 3.865 10 H 0.093 0.907 11 C -0.139 4.139 12 C -0.068 4.068 13 H 0.111 0.889 14 C -0.034 4.034 15 C -0.132 4.132 16 C -0.079 4.079 17 C -0.208 4.208 18 C 0.084 3.916 19 O -0.320 6.320 20 C 0.608 3.392 21 F -0.166 7.166 22 F -0.133 7.133 23 F -0.165 7.165 24 C -0.129 4.129 25 C -0.126 4.126 26 S 0.114 5.886 27 H 0.395 0.605 28 H 0.118 0.882 29 H -0.273 1.273 30 H -0.268 1.268 31 H 0.177 0.823 32 H 0.425 0.575 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.131 0.869 38 H 0.147 0.853 39 H 0.107 0.893 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 1.149 -0.632 1.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.127 4.127 3 Si 0.633 3.367 4 C -0.433 4.433 5 C -0.046 4.046 6 N -0.302 5.302 7 C -0.052 4.052 8 N -0.307 5.307 9 C 0.027 3.973 10 H 0.111 0.889 11 C -0.178 4.178 12 C -0.086 4.086 13 H 0.130 0.870 14 C -0.034 4.034 15 C -0.150 4.150 16 C -0.097 4.097 17 C -0.227 4.227 18 C 0.042 3.958 19 O -0.240 6.240 20 C 0.517 3.483 21 F -0.148 7.148 22 F -0.114 7.114 23 F -0.147 7.147 24 C -0.148 4.148 25 C -0.165 4.165 26 S 0.364 5.636 27 H 0.245 0.755 28 H 0.135 0.865 29 H -0.199 1.199 30 H -0.194 1.194 31 H 0.194 0.806 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.149 0.851 38 H 0.165 0.835 39 H 0.125 0.875 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.267 1.898 -0.190 2.290 hybrid contribution -0.186 -1.155 -0.134 1.177 sum 1.081 0.743 -0.324 1.351 Atomic orbital electron populations 1.86478 1.16964 1.82110 1.50284 1.24206 0.84893 1.09238 0.94331 0.94124 0.79173 0.76001 0.87449 1.25693 1.13217 0.99187 1.05158 1.21435 0.97673 0.93635 0.91901 1.66471 1.17923 1.34703 1.11057 1.23911 0.94827 0.93866 0.92615 1.43763 1.53846 1.14543 1.18557 1.21899 0.97325 0.84419 0.93668 0.88875 1.23621 0.96274 1.03349 0.94546 1.21656 0.97659 1.00102 0.89219 0.87046 1.19690 0.95662 0.93967 0.94064 1.21372 1.00737 0.94256 0.98643 1.21259 0.96002 1.01043 0.91414 1.21682 1.05689 0.93312 1.01969 1.18964 0.99324 0.92224 0.85280 1.86401 1.81435 1.39857 1.16323 1.19273 0.74752 0.74869 0.79403 1.93306 1.40295 1.88817 1.92341 1.93316 1.87530 1.73347 1.57206 1.93305 1.71290 1.55168 1.94963 1.20529 1.03776 1.01575 0.88880 1.23435 0.97057 1.02963 0.93004 1.83847 1.50979 1.12596 1.16201 0.75500 0.86468 1.19863 1.19383 0.80577 0.73571 0.91317 0.87965 0.83065 0.83028 0.85126 0.83527 0.87507 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.09 12.87 -148.98 -1.92 -1.83 16 2 C -0.01 0.01 2.99 71.23 0.21 0.22 16 3 Si 0.73 -1.31 31.05 68.60 2.13 0.82 16 4 C -0.31 -0.23 5.74 24.57 0.14 -0.09 16 5 C 0.10 0.36 11.22 83.54 0.94 1.29 16 6 N -0.58 -2.80 9.84 -202.03 -1.99 -4.78 16 7 C 0.32 0.24 8.09 179.32 1.45 1.69 16 8 N -0.67 2.87 5.42 -327.62 -1.77 1.09 16 9 C 0.13 -0.67 4.45 45.58 0.20 -0.47 16 10 H 0.09 -0.11 7.67 -2.38 -0.02 -0.13 16 11 C -0.14 0.83 7.27 31.18 0.23 1.05 16 12 C -0.07 0.51 3.85 -11.01 -0.04 0.46 16 13 H 0.11 -1.04 8.09 -2.39 -0.02 -1.06 16 14 C -0.03 0.13 5.29 -19.88 -0.11 0.02 16 15 C -0.13 0.56 8.53 22.28 0.19 0.75 16 16 C -0.08 0.19 10.04 22.26 0.22 0.41 16 17 C -0.21 -0.27 8.26 22.37 0.18 -0.08 16 18 C 0.08 0.22 6.48 22.51 0.15 0.37 16 19 O -0.32 -1.33 10.37 -92.44 -0.96 -2.29 16 20 C 0.61 1.81 3.42 113.37 0.39 2.19 16 21 F -0.17 -0.51 15.56 44.97 0.70 0.19 16 22 F -0.13 -0.45 17.53 44.97 0.79 0.34 16 23 F -0.17 -0.49 15.56 44.97 0.70 0.21 16 24 C -0.13 0.09 9.65 22.37 0.22 0.31 16 25 C -0.13 1.02 7.29 31.12 0.23 1.24 16 26 S 0.11 -0.18 20.57 -56.49 -1.16 -1.34 16 27 H 0.39 -3.03 8.70 -74.05 -0.64 -3.67 16 28 H 0.12 -0.02 7.96 -2.39 -0.02 -0.03 16 29 H -0.27 -1.19 7.11 99.48 0.71 -0.48 16 30 H -0.27 -0.71 7.11 99.48 0.71 0.00 16 31 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 32 H 0.42 -3.76 8.83 -92.71 -0.82 -4.57 16 33 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.10 -0.70 6.40 -2.39 -0.02 -0.71 16 35 H 0.15 -1.27 6.72 -2.91 -0.02 -1.29 16 36 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 37 H 0.13 0.12 5.10 -2.91 -0.01 0.11 16 38 H 0.15 -0.51 8.05 -2.91 -0.02 -0.53 16 39 H 0.11 -0.92 7.63 -2.39 -0.02 -0.93 16 40 H 0.09 -0.75 8.14 -2.39 -0.02 -0.76 16 Total: 0.00 -14.09 363.09 0.83 -13.25 By element: Atomic # 1 Polarization: -14.76 SS G_CDS: -0.28 Total: -15.04 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 4.60 Total: 9.38 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -3.76 Total: -3.69 kcal Atomic # 8 Polarization: -1.24 SS G_CDS: -2.88 Total: -4.12 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 2.19 Total: 0.74 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: 2.13 Total: 0.82 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.16 Total: -1.34 kcal Total: -14.09 0.83 -13.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860232_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.226 kcal (2) G-P(sol) polarization free energy of solvation -14.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds