Wall clock time and date at job start Mon Mar 8 2021 03:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33335 * 125.95422 * 2 1 4 4 C 1.50705 * 122.70530 * 359.97438 * 3 2 1 5 5 O 1.42905 * 109.46883 * 113.58801 * 4 3 2 6 6 Si 1.86297 * 109.46727 * 233.58502 * 4 3 2 7 7 N 1.32114 * 114.58013 * 180.02562 * 3 2 1 8 8 C 1.29689 * 116.86641 * 359.97438 * 7 3 2 9 9 N 1.38611 * 124.94487 * 179.97438 * 8 7 3 10 10 C 1.46502 * 119.99798 * 180.02562 * 9 8 7 11 11 H 1.09002 * 112.84732 * 23.80470 * 10 9 8 12 12 C 1.53776 * 113.61742 * 154.99869 * 10 9 8 13 13 C 1.53788 * 87.08285 * 89.11410 * 12 10 9 14 14 H 1.08993 * 113.61597 * 270.89017 * 13 12 10 15 15 C 1.50700 * 113.61305 * 140.06238 * 13 12 10 16 16 C 1.38122 * 119.96470 * 121.53613 * 15 13 12 17 17 C 1.38754 * 119.93959 * 180.02562 * 16 15 13 18 18 O 1.35899 * 120.05558 * 180.02562 * 17 16 15 19 19 C 1.42899 * 117.00121 * 179.97438 * 18 17 16 20 20 F 1.39907 * 109.47102 * 59.99935 * 19 18 17 21 21 F 1.39901 * 109.47503 * 179.97438 * 19 18 17 22 22 F 1.39895 * 109.47253 * 300.00093 * 19 18 17 23 23 C 1.38716 * 119.89172 * 359.97438 * 17 16 15 24 24 C 1.38163 * 119.93893 * 359.97438 * 23 17 16 25 25 C 1.38243 * 120.05828 * 359.73484 * 24 23 17 26 26 C 1.53782 * 87.16803 * 25.47695 * 13 12 10 27 27 S 1.70959 * 110.10164 * 0.25047 * 8 7 3 28 28 H 1.08996 * 109.47058 * 84.92449 * 1 2 3 29 29 H 1.08997 * 109.46929 * 204.92549 * 1 2 3 30 30 H 1.09002 * 109.46902 * 324.92530 * 1 2 3 31 31 H 1.08997 * 109.47497 * 353.58706 * 4 3 2 32 32 H 0.96701 * 113.99761 * 180.02562 * 5 4 3 33 33 H 1.48504 * 109.99586 * 178.68108 * 6 4 3 34 34 H 1.48498 * 110.00087 * 299.99987 * 6 4 3 35 35 H 0.97003 * 120.00193 * 0.02562 * 9 8 7 36 36 H 1.09006 * 113.61466 * 334.57333 * 12 10 9 37 37 H 1.09000 * 113.62151 * 203.66626 * 12 10 9 38 38 H 1.07997 * 120.03615 * 0.02562 * 16 15 13 39 39 H 1.07998 * 120.02686 * 179.97438 * 23 17 16 40 40 H 1.08005 * 119.96898 * 179.97438 * 24 23 17 41 41 H 1.08008 * 119.94689 * 180.29325 * 25 24 23 42 42 H 1.08999 * 113.61739 * 89.07411 * 26 13 12 43 43 H 1.09003 * 113.61705 * 219.97798 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 2.0698 3.1232 1.2342 6 14 2.4872 3.4404 -1.4140 7 7 3.5851 0.8188 -0.0005 8 6 3.9315 -0.4310 -0.0005 9 7 5.2385 -0.8926 -0.0015 10 6 5.5066 -2.3329 -0.0019 11 1 4.6802 -2.9171 -0.4068 12 6 6.8743 -2.7048 -0.5984 13 6 7.4482 -2.5443 0.8193 14 1 7.7795 -1.5305 1.0440 15 6 8.4746 -3.5882 1.1768 16 6 9.7514 -3.2050 1.5383 17 6 10.6962 -4.1667 1.8668 18 8 11.9530 -3.7923 2.2233 19 6 12.8730 -4.8360 2.5491 20 9 13.0313 -5.6798 1.4443 21 9 14.1098 -4.2780 2.8900 22 9 12.3790 -5.5723 3.6311 23 6 10.3554 -5.5109 1.8317 24 6 9.0765 -5.8888 1.4705 25 6 8.1353 -4.9285 1.1494 26 6 6.0380 -2.8620 1.3438 27 16 2.5413 -1.4260 -0.0067 28 1 -0.3633 0.0909 -1.0236 29 1 -0.3633 -0.9319 0.4331 30 1 -0.3633 0.8411 0.5906 31 1 0.6581 2.4499 -0.1157 32 1 1.7471 4.0321 1.3039 33 1 1.9305 4.8168 -1.4448 34 1 3.9641 3.4930 -1.2686 35 1 5.9756 -0.2620 -0.0019 36 1 7.2548 -1.9710 -1.3091 37 1 6.9229 -3.7261 -0.9761 38 1 10.0143 -2.1579 1.5652 39 1 11.0891 -6.2613 2.0866 40 1 8.8108 -6.9353 1.4426 41 1 7.1348 -5.2258 0.8718 42 1 5.8582 -3.9262 1.4962 43 1 5.7436 -2.2551 2.2001 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860232_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:35:28 Heat of formation + Delta-G solvation = -112.903193 kcal Electronic energy + Delta-G solvation = -32181.580601 eV Core-core repulsion = 27099.640689 eV Total energy + Delta-G solvation = -5081.939912 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.090 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -51.57327 -49.29270 -49.16806 -41.70356 -41.02983 -40.47625 -38.51108 -37.68867 -35.49624 -33.02436 -32.08454 -31.17317 -29.05274 -27.28128 -26.72899 -26.26712 -25.55176 -24.34171 -23.88941 -23.12817 -21.32630 -20.29234 -20.27205 -20.07767 -19.90679 -18.94940 -18.45024 -18.04734 -17.43865 -17.16331 -16.67481 -16.39256 -16.35847 -16.07836 -16.03206 -15.92489 -15.66159 -15.64361 -15.57670 -15.40073 -15.28328 -15.25611 -15.07778 -14.48976 -14.37183 -14.13473 -14.02909 -14.00456 -13.79034 -13.48291 -13.40979 -13.13179 -12.97662 -12.82733 -12.70412 -12.40908 -11.88347 -11.82286 -11.77707 -11.35407 -11.00861 -10.58007 -10.45303 -9.99170 -9.94899 -9.59995 -8.61983 -4.96994 -0.02538 0.08458 0.18718 0.20689 0.35125 0.74261 1.25172 1.58493 1.70455 1.78089 1.93270 2.14385 2.47884 2.64120 2.86743 3.36559 3.43870 3.52481 3.58604 3.59404 3.65353 3.85101 3.88254 4.02717 4.05983 4.16811 4.22994 4.24837 4.37539 4.45227 4.47542 4.74931 4.77735 4.85003 4.85420 4.93243 4.94773 4.99303 5.01324 5.02426 5.15041 5.25797 5.32696 5.34434 5.52043 5.75463 5.87082 6.30004 6.57965 6.99394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.250 4.250 3 C 0.089 3.911 4 C -0.045 4.045 5 O -0.554 6.554 6 Si 0.767 3.233 7 N -0.577 5.577 8 C 0.302 3.698 9 N -0.676 5.676 10 C 0.124 3.876 11 H 0.108 0.892 12 C -0.121 4.121 13 C -0.073 4.073 14 H 0.098 0.902 15 C -0.033 4.033 16 C -0.134 4.134 17 C 0.083 3.917 18 O -0.322 6.322 19 C 0.608 3.392 20 F -0.164 7.164 21 F -0.133 7.133 22 F -0.165 7.165 23 C -0.208 4.208 24 C -0.077 4.077 25 C -0.129 4.129 26 C -0.142 4.142 27 S 0.140 5.860 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.395 0.605 33 H -0.272 1.272 34 H -0.314 1.314 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.119 0.881 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 -4.415 -3.730 8.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.373 4.373 3 C -0.041 4.041 4 C -0.156 4.156 5 O -0.364 6.364 6 Si 0.672 3.328 7 N -0.303 5.303 8 C -0.069 4.069 9 N -0.316 5.316 10 C 0.018 3.982 11 H 0.126 0.874 12 C -0.159 4.159 13 C -0.092 4.092 14 H 0.116 0.884 15 C -0.033 4.033 16 C -0.153 4.153 17 C 0.041 3.959 18 O -0.243 6.243 19 C 0.517 3.483 20 F -0.146 7.146 21 F -0.115 7.115 22 F -0.147 7.147 23 C -0.226 4.226 24 C -0.094 4.094 25 C -0.146 4.146 26 C -0.181 4.181 27 S 0.389 5.611 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.245 0.755 33 H -0.199 1.199 34 H -0.242 1.242 35 H 0.249 0.751 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.174 0.826 41 H 0.178 0.822 42 H 0.137 0.863 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.108 -5.017 -3.843 8.126 hybrid contribution 0.992 1.831 1.470 2.549 sum -4.116 -3.185 -2.374 5.721 Atomic orbital electron populations 1.20324 0.84825 1.03777 1.04239 1.25516 1.02524 0.93209 1.16082 1.19069 0.86520 0.95626 1.02893 1.24465 1.03679 0.92357 0.95145 1.86590 1.81847 1.32482 1.35499 0.94037 0.77022 0.78228 0.83512 1.66074 1.18730 1.17922 1.27570 1.23566 0.92917 0.91587 0.98813 1.43761 1.01180 1.07046 1.79614 1.22146 0.99293 0.78786 0.97988 0.87386 1.23424 0.92576 1.04508 0.95385 1.21611 0.92521 0.97407 0.97612 0.88390 1.19650 0.92424 0.95086 0.96184 1.20506 0.91980 0.99097 1.03677 1.18964 0.81447 0.94829 1.00611 1.86401 1.21745 1.33117 1.83020 1.19263 0.78010 0.75906 0.75085 1.93306 1.95491 1.71736 1.54098 1.93317 1.40282 1.85853 1.92004 1.93303 1.87529 1.77525 1.56332 1.21705 1.00636 0.93445 1.06824 1.21297 0.91146 1.01613 0.95381 1.21402 1.01201 0.91470 1.00576 1.23750 0.93813 1.03408 0.97114 1.83614 0.95052 1.08944 1.73486 0.88614 0.90550 0.89954 0.87110 0.75461 1.19851 1.24199 0.75086 0.90020 0.86118 0.84340 0.85043 0.82578 0.82230 0.86332 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.29 9.71 71.24 0.69 0.98 16 2 C -0.25 -0.65 6.57 24.58 0.16 -0.49 16 3 C 0.09 0.62 5.22 41.41 0.22 0.83 16 4 C -0.04 -0.14 2.83 71.24 0.20 0.06 16 5 O -0.55 -3.58 12.86 -148.98 -1.92 -5.49 16 6 Si 0.77 2.35 32.62 68.60 2.24 4.59 16 7 N -0.58 -5.98 9.77 -189.86 -1.85 -7.83 16 8 C 0.30 1.51 8.24 179.32 1.48 2.98 16 9 N -0.68 0.11 5.42 -327.46 -1.78 -1.67 16 10 C 0.12 -0.75 4.32 45.61 0.20 -0.55 16 11 H 0.11 -0.82 7.05 -2.39 -0.02 -0.84 16 12 C -0.12 0.98 7.29 31.12 0.23 1.21 16 13 C -0.07 0.43 3.85 -11.01 -0.04 0.39 16 14 H 0.10 -0.47 8.08 -2.39 -0.02 -0.49 16 15 C -0.03 0.10 5.29 -19.88 -0.11 0.00 16 16 C -0.13 -0.14 9.65 22.37 0.22 0.07 16 17 C 0.08 0.31 6.48 22.51 0.15 0.45 16 18 O -0.32 -1.77 10.37 -92.42 -0.96 -2.73 16 19 C 0.61 2.31 3.42 113.37 0.39 2.70 16 20 F -0.16 -0.57 15.56 44.97 0.70 0.13 16 21 F -0.13 -0.58 17.53 44.97 0.79 0.21 16 22 F -0.16 -0.60 15.56 44.97 0.70 0.10 16 23 C -0.21 -0.28 8.26 22.37 0.18 -0.09 16 24 C -0.08 0.25 10.04 22.25 0.22 0.47 16 25 C -0.13 0.68 8.55 22.28 0.19 0.87 16 26 C -0.14 0.93 7.27 31.21 0.23 1.16 16 27 S 0.14 0.09 21.68 -56.49 -1.22 -1.13 16 28 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.08 -0.39 7.17 -2.39 -0.02 -0.41 16 31 H 0.11 -0.40 6.33 -2.39 -0.02 -0.41 16 32 H 0.39 -1.11 8.74 -74.06 -0.65 -1.76 16 33 H -0.27 -1.21 7.11 99.48 0.71 -0.50 16 34 H -0.31 -4.46 7.11 99.48 0.71 -3.76 16 35 H 0.41 -0.01 8.83 -92.71 -0.82 -0.83 16 36 H 0.08 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H 0.12 -1.32 7.66 -2.39 -0.02 -1.34 16 38 H 0.14 -0.03 8.05 -2.91 -0.02 -0.06 16 39 H 0.13 0.12 5.10 -2.91 -0.01 0.10 16 40 H 0.16 -1.25 8.06 -2.91 -0.02 -1.27 16 41 H 0.16 -1.78 6.71 -2.91 -0.02 -1.80 16 42 H 0.12 -1.19 6.37 -2.39 -0.02 -1.21 16 43 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -20.28 383.32 0.99 -19.30 By element: Atomic # 1 Polarization: -16.21 SS G_CDS: -0.31 Total: -16.53 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 4.60 Total: 11.05 kcal Atomic # 7 Polarization: -5.87 SS G_CDS: -3.63 Total: -9.50 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -2.87 Total: -8.22 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 2.19 Total: 0.44 kcal Atomic # 14 Polarization: 2.35 SS G_CDS: 2.24 Total: 4.59 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.22 Total: -1.13 kcal Total: -20.28 0.99 -19.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860232_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.605 kcal (2) G-P(sol) polarization free energy of solvation -20.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds