Wall clock time and date at job start Mon Mar 8 2021 03:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86304 * 109.47003 * 2 1 4 4 C 1.50703 * 109.46968 * 240.00491 * 2 1 3 5 5 C 1.37980 * 120.32846 * 119.99784 * 4 2 1 6 6 N 1.32014 * 120.90030 * 179.97438 * 5 4 2 7 7 C 1.32336 * 121.64682 * 0.02562 * 6 5 4 8 8 N 1.39148 * 119.71736 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00074 * 0.02562 * 8 7 6 10 10 H 1.09001 * 112.84822 * 25.32791 * 9 8 7 11 11 C 1.53780 * 113.61535 * 156.52955 * 9 8 7 12 12 C 1.53784 * 87.07961 * 89.11521 * 11 9 8 13 13 H 1.09002 * 113.61272 * 270.79779 * 12 11 9 14 14 C 1.50698 * 113.61469 * 139.98335 * 12 11 9 15 15 C 1.38249 * 119.96898 * 299.72423 * 14 12 11 16 16 C 1.38292 * 120.11044 * 179.72860 * 15 14 12 17 17 C 1.38129 * 120.05250 * 0.54027 * 16 15 14 18 18 C 1.38750 * 119.94655 * 359.73572 * 17 16 15 19 19 O 1.35897 * 120.05817 * 180.02562 * 18 17 16 20 20 C 1.42904 * 116.99949 * 359.97231 * 19 18 17 21 21 F 1.39897 * 109.46988 * 60.00176 * 20 19 18 22 22 F 1.39892 * 109.46997 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.47149 * 300.00247 * 20 19 18 24 24 C 1.38168 * 119.97637 * 119.99627 * 14 12 11 25 25 C 1.53783 * 113.61401 * 254.13710 * 9 8 7 26 26 C 1.39346 * 120.56454 * 359.97438 * 7 6 5 27 27 F 1.35097 * 120.46944 * 179.97438 * 26 7 6 28 28 C 1.38440 * 119.05258 * 0.02562 * 26 7 6 29 29 H 0.96705 * 114.00270 * 60.00057 * 1 2 3 30 30 H 1.08988 * 109.47396 * 120.00254 * 2 1 3 31 31 H 1.48494 * 109.99800 * 60.00240 * 3 2 1 32 32 H 1.48496 * 109.99911 * 181.32294 * 3 2 1 33 33 H 1.08000 * 119.55389 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99609 * 179.97438 * 8 7 6 35 35 H 1.09005 * 113.61341 * 203.66002 * 11 9 8 36 36 H 1.08995 * 113.61293 * 334.47859 * 11 9 8 37 37 H 1.07992 * 119.94513 * 359.97438 * 15 14 12 38 38 H 1.07999 * 119.97411 * 180.25472 * 16 15 14 39 39 H 1.07993 * 120.02640 * 179.75109 * 17 16 15 40 40 H 1.07998 * 120.02421 * 359.97438 * 24 14 12 41 41 H 1.09005 * 113.61196 * 25.43173 * 25 9 8 42 42 H 1.09002 * 113.61603 * 156.33116 * 25 9 8 43 43 H 1.08004 * 120.75278 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7249 -0.0462 -2.1432 6 7 3.1716 -0.6576 -3.2247 7 6 2.8790 -1.9232 -3.4776 8 7 3.3710 -2.5278 -4.6303 9 6 4.2094 -1.7639 -5.5574 10 1 4.7318 -0.9385 -5.0737 11 6 5.1207 -2.6424 -6.4306 12 6 3.9633 -2.7009 -7.4416 13 1 3.2730 -3.5264 -7.2677 14 6 4.4105 -2.6047 -8.8775 15 6 5.0914 -1.4839 -9.3150 16 6 5.5081 -1.3949 -10.6307 17 6 5.2349 -2.4214 -11.5137 18 6 4.5467 -3.5447 -11.0784 19 8 4.2771 -4.5562 -11.9451 20 6 4.7315 -4.3961 -13.2905 21 9 6.1233 -4.2547 -13.2989 22 9 4.3720 -5.5205 -14.0410 23 9 4.1436 -3.2559 -13.8487 24 6 4.1347 -3.6340 -9.7569 25 6 3.4855 -1.3600 -6.8527 26 6 2.0825 -2.6555 -2.5996 27 9 1.7846 -3.9472 -2.8599 28 6 1.5999 -2.0401 -1.4572 29 1 -0.3934 0.4417 -0.7651 30 1 1.7923 -0.5138 0.8898 31 1 1.5615 2.4678 1.2085 32 1 3.5345 1.7703 -0.0322 33 1 2.9850 0.9876 -1.9702 34 1 3.1593 -3.4553 -4.8195 35 1 6.0015 -2.1209 -6.8051 36 1 5.3588 -3.6064 -5.9811 37 1 5.3018 -0.6783 -8.6273 38 1 6.0435 -0.5202 -10.9691 39 1 5.5570 -2.3497 -12.5420 40 1 3.5993 -4.5076 -9.4155 41 1 2.4031 -1.2901 -6.7443 42 1 3.9201 -0.4885 -7.3423 43 1 0.9799 -2.5817 -0.7581 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860232_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:35:32 Heat of formation + Delta-G solvation = -159.640552 kcal Electronic energy + Delta-G solvation = -34204.284164 eV Core-core repulsion = 28717.248965 eV Total energy + Delta-G solvation = -5487.035199 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.109 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -51.55832 -49.95442 -49.27782 -49.15344 -41.74404 -41.33443 -40.39136 -38.49397 -37.79046 -35.39749 -33.20423 -32.39841 -31.55027 -30.71483 -27.29155 -26.82556 -26.59009 -25.98273 -24.76076 -23.90077 -23.03617 -22.83881 -20.97586 -20.27654 -20.14061 -19.77673 -19.41117 -18.47326 -18.21821 -17.87090 -17.49483 -17.14430 -17.00697 -16.63148 -16.36646 -16.17066 -16.09684 -15.98589 -15.90919 -15.69670 -15.62514 -15.56099 -15.37843 -15.29050 -15.26762 -15.07892 -14.72145 -14.48911 -14.33493 -14.20595 -14.00796 -13.87806 -13.48647 -13.43351 -13.00928 -12.74782 -12.69587 -12.53280 -12.11349 -11.89285 -11.78804 -11.26566 -11.12813 -10.69685 -10.63771 -10.39862 -9.92812 -9.58338 -8.75219 -4.95132 -0.07619 0.09567 0.11664 0.22309 0.36680 1.33875 1.67898 1.72099 1.95774 2.02265 2.49500 2.55087 2.65802 2.88359 3.03205 3.26730 3.47967 3.51010 3.59501 3.61597 3.67992 3.74709 3.87296 3.88619 3.96576 4.00690 4.06889 4.19927 4.28130 4.41691 4.46569 4.49705 4.69767 4.73326 4.82135 4.86650 4.89389 4.98903 5.00112 5.03760 5.08615 5.17448 5.27983 5.36137 5.45554 5.57276 5.88579 6.03049 6.19736 6.80367 6.96247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.060 4.060 3 Si 0.776 3.224 4 C -0.206 4.206 5 C 0.148 3.852 6 N -0.521 5.521 7 C 0.385 3.615 8 N -0.698 5.698 9 C 0.133 3.867 10 H 0.105 0.895 11 C -0.129 4.129 12 C -0.072 4.072 13 H 0.101 0.899 14 C -0.033 4.033 15 C -0.130 4.130 16 C -0.077 4.077 17 C -0.208 4.208 18 C 0.084 3.916 19 O -0.321 6.321 20 C 0.608 3.392 21 F -0.165 7.165 22 F -0.133 7.133 23 F -0.165 7.165 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.038 4.038 27 F -0.142 7.142 28 C -0.042 4.042 29 H 0.396 0.604 30 H 0.110 0.890 31 H -0.299 1.299 32 H -0.278 1.278 33 H 0.184 0.816 34 H 0.415 0.585 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 4.557 0.221 4.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.171 4.171 3 Si 0.681 3.319 4 C -0.211 4.211 5 C -0.009 4.009 6 N -0.238 5.238 7 C 0.147 3.853 8 N -0.330 5.330 9 C 0.027 3.973 10 H 0.123 0.877 11 C -0.167 4.167 12 C -0.090 4.090 13 H 0.119 0.881 14 C -0.034 4.034 15 C -0.148 4.148 16 C -0.095 4.095 17 C -0.226 4.226 18 C 0.042 3.958 19 O -0.242 6.242 20 C 0.517 3.483 21 F -0.147 7.147 22 F -0.114 7.114 23 F -0.147 7.147 24 C -0.151 4.151 25 C -0.175 4.175 26 C -0.065 4.065 27 F -0.121 7.121 28 C -0.068 4.068 29 H 0.246 0.754 30 H 0.128 0.872 31 H -0.227 1.227 32 H -0.204 1.204 33 H 0.201 0.799 34 H 0.253 0.747 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.004 5.160 0.437 5.552 hybrid contribution -0.620 -2.148 0.069 2.236 sum 1.385 3.012 0.506 3.353 Atomic orbital electron populations 1.86478 1.17281 1.82145 1.50559 1.25008 0.85210 1.10723 0.96113 0.93795 0.78049 0.74712 0.85320 1.20990 1.04629 0.94836 1.00681 1.22712 0.91067 0.99889 0.87243 1.67347 1.26669 1.07388 1.22429 1.18522 0.90143 0.89280 0.87360 1.44319 1.54179 1.14526 1.19999 1.21834 0.91581 0.95164 0.88675 0.87678 1.23435 0.97159 1.01141 0.94926 1.21686 0.98677 0.99853 0.88833 0.88070 1.19689 0.95904 0.92725 0.95044 1.21394 0.98630 0.98554 0.96213 1.21286 0.97321 0.97962 0.92960 1.21692 1.03703 0.95133 1.02113 1.18952 1.00039 0.87105 0.89698 1.86400 1.75792 1.44481 1.17514 1.19264 0.74859 0.74494 0.79655 1.93303 1.29924 1.95328 1.96122 1.93315 1.91909 1.51826 1.74380 1.93305 1.84173 1.51333 1.85889 1.20511 1.03823 1.01612 0.89197 1.23636 1.01144 0.97023 0.95729 1.18148 1.07872 0.80840 0.99615 1.91466 1.92358 1.34156 1.94090 1.21417 0.96105 0.94790 0.94479 0.75410 0.87241 1.22666 1.20417 0.79923 0.74686 0.87130 0.90415 0.82624 0.82733 0.85047 0.84060 0.91624 0.87281 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.22 12.78 -148.98 -1.90 -0.69 16 2 C -0.06 0.20 2.84 71.24 0.20 0.40 16 3 Si 0.78 -4.10 29.82 68.60 2.05 -2.06 16 4 C -0.21 0.39 5.40 -19.76 -0.11 0.29 16 5 C 0.15 -0.33 9.84 84.60 0.83 0.50 16 6 N -0.52 -0.54 9.15 -193.03 -1.77 -2.31 16 7 C 0.39 0.62 7.49 133.08 1.00 1.61 16 8 N -0.70 1.34 5.42 -321.79 -1.74 -0.41 16 9 C 0.13 -0.62 4.32 45.52 0.20 -0.43 16 10 H 0.11 -0.34 7.45 -2.39 -0.02 -0.36 16 11 C -0.13 0.87 7.29 31.12 0.23 1.10 16 12 C -0.07 0.41 3.87 -10.92 -0.04 0.37 16 13 H 0.10 -0.58 8.09 -2.39 -0.02 -0.60 16 14 C -0.03 0.09 5.29 -19.88 -0.11 -0.01 16 15 C -0.13 0.56 8.62 22.29 0.19 0.75 16 16 C -0.08 0.20 10.04 22.26 0.22 0.42 16 17 C -0.21 -0.32 8.26 22.37 0.18 -0.14 16 18 C 0.08 0.30 6.48 22.51 0.15 0.44 16 19 O -0.32 -1.65 10.37 -92.39 -0.96 -2.60 16 20 C 0.61 2.15 3.42 113.37 0.39 2.54 16 21 F -0.16 -0.55 15.56 44.97 0.70 0.15 16 22 F -0.13 -0.53 17.53 44.97 0.79 0.26 16 23 F -0.16 -0.57 15.56 44.97 0.70 0.13 16 24 C -0.13 -0.10 9.65 22.37 0.22 0.11 16 25 C -0.14 0.79 7.27 31.21 0.23 1.01 16 26 C -0.04 -0.10 7.35 22.58 0.17 0.06 16 27 F -0.14 -0.61 16.65 44.97 0.75 0.14 16 28 C -0.04 -0.03 9.75 22.48 0.22 0.19 16 29 H 0.40 -4.01 8.70 -74.05 -0.64 -4.65 16 30 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 31 H -0.30 -0.83 7.11 99.48 0.71 -0.12 16 32 H -0.28 0.34 7.11 99.48 0.71 1.05 16 33 H 0.18 -1.36 4.88 -2.91 -0.01 -1.38 16 34 H 0.42 -1.41 8.18 -92.71 -0.76 -2.17 16 35 H 0.11 -0.92 7.73 -2.38 -0.02 -0.93 16 36 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.16 -1.44 6.63 -2.91 -0.02 -1.46 16 38 H 0.16 -1.11 8.06 -2.91 -0.02 -1.13 16 39 H 0.13 0.14 5.10 -2.91 -0.01 0.12 16 40 H 0.14 -0.16 8.05 -2.91 -0.02 -0.18 16 41 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 42 H 0.11 -0.88 6.30 -2.39 -0.02 -0.89 16 43 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 Total: 0.00 -14.47 375.70 2.54 -11.93 By element: Atomic # 1 Polarization: -13.54 SS G_CDS: -0.24 Total: -13.77 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 4.16 Total: 9.23 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -3.51 Total: -2.72 kcal Atomic # 8 Polarization: -0.43 SS G_CDS: -2.86 Total: -3.29 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 2.94 Total: 0.67 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.05 Total: -2.06 kcal Total: -14.47 2.54 -11.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860232_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.707 kcal (2) G-P(sol) polarization free energy of solvation -14.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds