Wall clock time and date at job start Mon Mar 8 2021 03:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00462 * 2 1 4 4 C 1.38708 * 120.05402 * 0.02682 * 3 2 1 5 5 C 1.38160 * 119.94700 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.05173 * 359.71776 * 5 4 3 7 7 C 1.38289 * 120.11233 * 0.55620 * 6 5 4 8 8 C 1.50695 * 119.97390 * 179.72241 * 7 6 5 9 9 H 1.09001 * 112.90797 * 190.97899 * 8 7 6 10 10 C 1.53780 * 113.61277 * 322.23079 * 8 7 6 11 11 C 1.53778 * 87.08206 * 139.98417 * 10 8 7 12 12 H 1.08999 * 113.68868 * 220.01175 * 11 10 8 13 13 N 1.46494 * 113.61854 * 89.11269 * 11 10 8 14 14 C 1.46499 * 120.00301 * 322.50525 * 13 11 10 15 15 C 1.38415 * 119.99950 * 142.50274 * 13 11 10 16 16 N 1.32486 * 119.21415 * 179.97438 * 15 13 11 17 17 C 1.32283 * 120.73820 * 179.97438 * 16 15 13 18 18 C 1.38600 * 119.19467 * 0.26146 * 17 16 15 19 19 C 1.50703 * 120.71796 * 179.74855 * 18 17 16 20 20 O 1.42896 * 109.47074 * 299.99158 * 19 18 17 21 21 Si 1.86301 * 109.46942 * 179.97438 * 19 18 17 22 22 C 1.38609 * 118.55968 * 359.52090 * 18 17 16 23 23 N 1.32271 * 119.19612 * 0.47334 * 22 18 17 24 24 C 1.53780 * 113.61206 * 59.72688 * 8 7 6 25 25 C 1.38128 * 120.05296 * 359.44841 * 7 6 5 26 26 H 1.09006 * 109.47132 * 59.99508 * 1 2 3 27 27 H 1.08996 * 109.47453 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46364 * 299.99965 * 1 2 3 29 29 H 1.08007 * 120.03033 * 359.94960 * 4 3 2 30 30 H 1.07993 * 119.97616 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.94346 * 180.29616 * 6 5 4 32 32 H 1.08998 * 113.61594 * 25.42725 * 10 8 7 33 33 H 1.09007 * 113.61074 * 254.53061 * 10 8 7 34 34 H 1.09002 * 109.46555 * 270.00168 * 14 13 11 35 35 H 1.09006 * 109.46963 * 29.99502 * 14 13 11 36 36 H 1.09002 * 109.47181 * 149.99880 * 14 13 11 37 37 H 1.08002 * 120.39924 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.47445 * 60.00083 * 19 18 17 39 39 H 0.96698 * 114.00413 * 300.00894 * 20 19 18 40 40 H 1.48496 * 110.00574 * 58.67715 * 21 19 18 41 41 H 1.48498 * 110.00050 * 179.97438 * 21 19 18 42 42 H 1.08004 * 120.39937 * 180.20009 * 22 18 17 43 43 H 1.08996 * 113.61629 * 105.47762 * 24 8 7 44 44 H 1.08996 * 113.61725 * 334.56437 * 24 8 7 45 45 H 1.07995 * 120.02637 * 180.25478 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2918 2.3749 0.0006 5 6 1.9215 3.6047 0.0011 6 6 3.3022 3.6756 0.0070 7 6 4.0564 2.5166 0.0007 8 6 5.5612 2.5975 0.0008 9 1 6.0378 1.6371 -0.1956 10 6 6.1162 3.7474 -0.8563 11 6 7.1519 3.9732 0.2578 12 1 7.3487 5.0248 0.4662 13 7 8.3769 3.1879 0.0884 14 6 8.3046 1.8216 -0.4354 15 6 9.6027 3.7367 0.4231 16 7 10.7006 3.0124 0.2641 17 6 11.8877 3.5071 0.5738 18 6 11.9730 4.7967 1.0746 19 6 13.3071 5.3924 1.4440 20 8 13.9192 4.5962 2.4606 21 14 13.0587 7.1265 2.0779 22 6 10.8052 5.5282 1.2239 23 7 9.6501 4.9739 0.8949 24 6 6.1384 3.3335 1.2215 25 6 3.4317 1.2847 0.0001 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 0.2132 2.3201 0.0002 30 1 1.3347 4.5113 0.0020 31 1 3.7925 4.6379 0.0122 32 1 5.4192 4.5763 -0.9791 33 1 6.5536 3.4176 -1.7987 34 1 8.1872 1.1213 0.3916 35 1 7.4516 1.7352 -1.1085 36 1 9.2211 1.5919 -0.9789 37 1 12.7791 2.9117 0.4423 38 1 13.9505 5.4162 0.5644 39 1 13.4008 4.5307 3.2742 40 1 12.1573 7.1117 3.2579 41 1 14.3670 7.7249 2.4462 42 1 10.8375 6.5369 1.6084 43 1 6.5937 2.6698 1.9564 44 1 5.4474 4.0493 1.6667 45 1 4.0211 0.3798 -0.0007 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10860588_12175864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:38:14 Heat of formation + Delta-G solvation = 66.097472 kcal Electronic energy + Delta-G solvation = -27084.169612 eV Core-core repulsion = 23263.775521 eV Total energy + Delta-G solvation = -3820.394092 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22470 -41.46467 -40.47897 -38.40608 -37.93622 -35.85222 -34.65879 -32.68382 -32.06520 -30.94947 -28.77523 -28.25626 -26.94116 -26.74113 -25.49886 -24.96160 -23.57223 -23.11210 -21.79115 -20.51414 -19.17848 -18.87150 -18.22664 -18.00140 -17.25062 -16.96097 -16.71667 -16.65775 -16.54238 -16.13770 -16.06516 -15.96179 -15.43080 -14.88926 -14.62376 -14.56151 -14.40052 -14.15448 -14.01739 -13.94120 -13.52232 -13.33022 -13.15400 -13.13938 -13.05295 -12.65054 -12.24569 -12.17533 -12.12809 -11.80747 -11.71916 -11.65882 -11.54132 -11.29478 -11.03168 -10.68098 -9.95997 -9.72344 -9.12144 -8.86316 -5.02218 0.09098 0.20200 0.35787 0.52381 1.23204 1.53375 1.57605 1.92591 2.32342 2.76263 2.83882 3.13690 3.31814 3.42006 3.54786 3.66311 3.69095 3.71607 3.74193 3.86234 3.92524 4.02897 4.14474 4.18733 4.20832 4.21309 4.26103 4.35534 4.51364 4.53571 4.55994 4.57487 4.61344 4.65514 4.69562 4.76037 4.79891 4.92254 4.95599 4.97937 5.08616 5.14359 5.33887 5.36738 5.50753 5.66398 5.81707 5.84804 5.90507 6.34990 6.40655 6.45830 7.28021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.213 4.213 5 C -0.077 4.077 6 C -0.155 4.155 7 C -0.031 4.031 8 C -0.082 4.082 9 H 0.105 0.895 10 C -0.141 4.141 11 C 0.134 3.866 12 H 0.117 0.883 13 N -0.565 5.565 14 C 0.090 3.910 15 C 0.569 3.431 16 N -0.566 5.566 17 C 0.223 3.777 18 C -0.294 4.294 19 C -0.052 4.052 20 O -0.530 6.530 21 Si 0.677 3.323 22 C 0.200 3.800 23 N -0.562 5.562 24 C -0.139 4.139 25 C -0.149 4.149 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.170 0.830 38 H 0.120 0.880 39 H 0.376 0.624 40 H -0.258 1.258 41 H -0.253 1.253 42 H 0.166 0.834 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 2.046 -1.421 3.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.173 4.173 7 C -0.031 4.031 8 C -0.100 4.100 9 H 0.123 0.877 10 C -0.180 4.180 11 C 0.029 3.971 12 H 0.135 0.865 13 N -0.279 5.279 14 C -0.053 4.053 15 C 0.215 3.785 16 N -0.288 5.288 17 C 0.055 3.945 18 C -0.303 4.303 19 C -0.163 4.163 20 O -0.336 6.336 21 Si 0.578 3.422 22 C 0.032 3.968 23 N -0.284 5.284 24 C -0.178 4.178 25 C -0.168 4.168 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.187 0.813 38 H 0.138 0.862 39 H 0.223 0.777 40 H -0.182 1.182 41 H -0.178 1.178 42 H 0.183 0.817 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.117 1.822 -1.508 3.913 hybrid contribution 0.373 -0.493 1.104 1.266 sum -2.744 1.328 -0.403 3.075 Atomic orbital electron populations 1.23085 0.78106 1.04186 1.01427 1.86080 1.21605 1.26926 1.88586 1.19035 0.92315 0.84253 0.95973 1.21264 1.00140 0.92472 1.09328 1.20942 0.94589 0.97035 0.96896 1.20918 0.93613 0.98123 1.04607 1.19473 0.94744 0.92155 0.96760 1.21888 0.90811 0.99550 0.97743 0.87666 1.23539 0.97690 0.98812 0.97924 1.21952 0.82266 0.96584 0.96296 0.86528 1.45711 1.01343 1.14637 1.66217 1.21891 1.03714 0.80625 0.99058 1.19271 0.86332 0.85431 0.87490 1.67991 0.98360 1.37772 1.24656 1.22846 0.94382 0.91412 0.85890 1.21641 0.97790 0.99110 1.11730 1.24659 0.92448 1.04458 0.94777 1.86605 1.49209 1.71022 1.26786 0.95266 0.82227 0.77918 0.86773 1.22776 0.86385 0.98355 0.89287 1.67896 1.29445 1.11684 1.19328 1.23501 0.97884 0.99984 0.96427 1.20304 0.91308 0.98228 1.06942 0.92550 0.88051 0.92560 0.85522 0.85676 0.85704 0.88001 0.90423 0.92705 0.90263 0.89913 0.81300 0.86235 0.77655 1.18247 1.17797 0.81699 0.90831 0.88461 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.97 16 2 O -0.32 -0.81 10.50 -19.43 -0.20 -1.02 16 3 C 0.13 0.32 6.69 -39.22 -0.26 0.06 16 4 C -0.21 -0.26 9.04 -39.44 -0.36 -0.61 16 5 C -0.08 -0.04 10.04 -39.60 -0.40 -0.43 16 6 C -0.15 -0.03 8.59 -39.56 -0.34 -0.37 16 7 C -0.03 -0.02 5.29 -104.65 -0.55 -0.57 16 8 C -0.08 0.07 3.31 -90.96 -0.30 -0.23 16 9 H 0.11 -0.12 5.50 -51.93 -0.29 -0.41 16 10 C -0.14 0.18 6.67 -25.92 -0.17 0.01 16 11 C 0.13 -0.02 4.48 -67.12 -0.30 -0.32 16 12 H 0.12 0.06 7.11 -51.93 -0.37 -0.31 16 13 N -0.56 -0.69 3.18 -175.34 -0.56 -1.25 16 14 C 0.09 -0.02 8.84 59.85 0.53 0.51 16 15 C 0.57 1.65 8.17 -322.80 -2.64 -0.98 16 16 N -0.57 -1.63 9.11 -13.93 -0.13 -1.76 16 17 C 0.22 0.24 10.92 -17.22 -0.19 0.05 16 18 C -0.29 0.01 5.40 -104.35 -0.56 -0.55 16 19 C -0.05 0.06 2.85 36.01 0.10 0.16 16 20 O -0.53 -0.17 12.79 -35.23 -0.45 -0.62 16 21 Si 0.68 -1.20 29.87 -169.99 -5.08 -6.28 16 22 C 0.20 0.08 9.92 -17.23 -0.17 -0.09 16 23 N -0.56 -1.38 9.00 -13.93 -0.13 -1.50 16 24 C -0.14 0.08 7.21 -25.91 -0.19 -0.11 16 25 C -0.15 -0.28 9.65 -39.43 -0.38 -0.67 16 26 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 27 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 28 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 29 H 0.13 -0.06 6.30 -52.48 -0.33 -0.40 16 30 H 0.13 -0.18 8.06 -52.49 -0.42 -0.61 16 31 H 0.13 -0.19 6.67 -52.48 -0.35 -0.54 16 32 H 0.10 -0.21 6.32 -51.93 -0.33 -0.53 16 33 H 0.08 -0.08 7.36 -51.92 -0.38 -0.46 16 34 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 35 H 0.08 -0.13 4.83 -51.93 -0.25 -0.38 16 36 H 0.08 0.04 7.33 -51.93 -0.38 -0.34 16 37 H 0.17 -0.11 8.06 -52.49 -0.42 -0.53 16 38 H 0.12 -0.25 7.96 -51.93 -0.41 -0.66 16 39 H 0.38 -0.81 8.70 45.56 0.40 -0.42 16 40 H -0.26 -0.06 7.11 56.52 0.40 0.35 16 41 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 42 H 0.17 -0.35 5.04 -52.48 -0.26 -0.61 16 43 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.10 -0.09 7.71 -51.93 -0.40 -0.49 16 45 H 0.13 0.14 8.05 -52.49 -0.42 -0.28 16 LS Contribution 360.31 15.07 5.43 5.43 Total: 0.00 -7.13 360.31 -12.19 -19.32 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: -5.89 Total: -9.13 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -5.19 Total: -3.19 kcal Atomic # 7 Polarization: -3.70 SS G_CDS: -0.81 Total: -4.51 kcal Atomic # 8 Polarization: -0.99 SS G_CDS: -0.65 Total: -1.64 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.08 Total: -6.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -7.13 -12.19 -19.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860588_12175864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.419 kcal (2) G-P(sol) polarization free energy of solvation -7.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds