Wall clock time and date at job start Mon Mar 8 2021 03:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00462 * 2 1 4 4 C 1.38708 * 120.05402 * 0.02682 * 3 2 1 5 5 C 1.38160 * 119.94700 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.05173 * 359.71776 * 5 4 3 7 7 C 1.38289 * 120.11233 * 0.55620 * 6 5 4 8 8 C 1.50695 * 119.97390 * 179.72241 * 7 6 5 9 9 H 1.09001 * 112.90797 * 190.97899 * 8 7 6 10 10 C 1.53780 * 113.61277 * 322.23079 * 8 7 6 11 11 C 1.53778 * 87.08206 * 139.98417 * 10 8 7 12 12 H 1.08999 * 113.68868 * 220.01175 * 11 10 8 13 13 N 1.46494 * 113.61854 * 89.11269 * 11 10 8 14 14 C 1.46499 * 120.00301 * 322.50525 * 13 11 10 15 15 C 1.38415 * 119.99950 * 142.50274 * 13 11 10 16 16 N 1.32486 * 119.21415 * 179.97438 * 15 13 11 17 17 C 1.32283 * 120.73820 * 179.97438 * 16 15 13 18 18 C 1.38600 * 119.19467 * 0.26146 * 17 16 15 19 19 C 1.50703 * 120.71796 * 179.74855 * 18 17 16 20 20 O 1.42896 * 109.47074 * 299.99158 * 19 18 17 21 21 Si 1.86301 * 109.46942 * 179.97438 * 19 18 17 22 22 C 1.38609 * 118.55968 * 359.52090 * 18 17 16 23 23 N 1.32271 * 119.19612 * 0.47334 * 22 18 17 24 24 C 1.53780 * 113.61206 * 59.72688 * 8 7 6 25 25 C 1.38128 * 120.05296 * 359.44841 * 7 6 5 26 26 H 1.09006 * 109.47132 * 59.99508 * 1 2 3 27 27 H 1.08996 * 109.47453 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46364 * 299.99965 * 1 2 3 29 29 H 1.08007 * 120.03033 * 359.94960 * 4 3 2 30 30 H 1.07993 * 119.97616 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.94346 * 180.29616 * 6 5 4 32 32 H 1.08998 * 113.61594 * 25.42725 * 10 8 7 33 33 H 1.09007 * 113.61074 * 254.53061 * 10 8 7 34 34 H 1.09002 * 109.46555 * 270.00168 * 14 13 11 35 35 H 1.09006 * 109.46963 * 29.99502 * 14 13 11 36 36 H 1.09002 * 109.47181 * 149.99880 * 14 13 11 37 37 H 1.08002 * 120.39924 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.47445 * 60.00083 * 19 18 17 39 39 H 0.96698 * 114.00413 * 300.00894 * 20 19 18 40 40 H 1.48496 * 110.00574 * 58.67715 * 21 19 18 41 41 H 1.48498 * 110.00050 * 179.97438 * 21 19 18 42 42 H 1.08004 * 120.39937 * 180.20009 * 22 18 17 43 43 H 1.08996 * 113.61629 * 105.47762 * 24 8 7 44 44 H 1.08996 * 113.61725 * 334.56437 * 24 8 7 45 45 H 1.07995 * 120.02637 * 180.25478 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2918 2.3749 0.0006 5 6 1.9215 3.6047 0.0011 6 6 3.3022 3.6756 0.0070 7 6 4.0564 2.5166 0.0007 8 6 5.5612 2.5975 0.0008 9 1 6.0378 1.6371 -0.1956 10 6 6.1162 3.7474 -0.8563 11 6 7.1519 3.9732 0.2578 12 1 7.3487 5.0248 0.4662 13 7 8.3769 3.1879 0.0884 14 6 8.3046 1.8216 -0.4354 15 6 9.6027 3.7367 0.4231 16 7 10.7006 3.0124 0.2641 17 6 11.8877 3.5071 0.5738 18 6 11.9730 4.7967 1.0746 19 6 13.3071 5.3924 1.4440 20 8 13.9192 4.5962 2.4606 21 14 13.0587 7.1265 2.0779 22 6 10.8052 5.5282 1.2239 23 7 9.6501 4.9739 0.8949 24 6 6.1384 3.3335 1.2215 25 6 3.4317 1.2847 0.0001 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 0.2132 2.3201 0.0002 30 1 1.3347 4.5113 0.0020 31 1 3.7925 4.6379 0.0122 32 1 5.4192 4.5763 -0.9791 33 1 6.5536 3.4176 -1.7987 34 1 8.1872 1.1213 0.3916 35 1 7.4516 1.7352 -1.1085 36 1 9.2211 1.5919 -0.9789 37 1 12.7791 2.9117 0.4423 38 1 13.9505 5.4162 0.5644 39 1 13.4008 4.5307 3.2742 40 1 12.1573 7.1117 3.2579 41 1 14.3670 7.7249 2.4462 42 1 10.8375 6.5369 1.6084 43 1 6.5937 2.6698 1.9564 44 1 5.4474 4.0493 1.6667 45 1 4.0211 0.3798 -0.0007 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860588_12175864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:38:13 Heat of formation + Delta-G solvation = 72.217842 kcal Electronic energy + Delta-G solvation = -27083.904213 eV Core-core repulsion = 23263.775521 eV Total energy + Delta-G solvation = -3820.128692 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26405 -41.47478 -40.49281 -38.41504 -37.93496 -35.86410 -34.73522 -32.70688 -32.07685 -30.95794 -28.77090 -28.20389 -26.93924 -26.68305 -25.53471 -24.94950 -23.59029 -23.13584 -21.79893 -20.50517 -19.20035 -18.89671 -18.23901 -18.01312 -17.26029 -16.94957 -16.74304 -16.67205 -16.54298 -16.12530 -16.05865 -15.94661 -15.43551 -14.87835 -14.63735 -14.56556 -14.40423 -14.13818 -14.04730 -13.92768 -13.50012 -13.27891 -13.13761 -13.10317 -13.01603 -12.60243 -12.29233 -12.15520 -12.11180 -11.89877 -11.73488 -11.64067 -11.51844 -11.27015 -11.03938 -10.66518 -10.02662 -9.75425 -9.16443 -8.89432 -4.90678 0.04023 0.14757 0.32923 0.48020 1.32734 1.56078 1.61932 1.99040 2.34666 2.73327 2.77477 3.13088 3.40908 3.45462 3.54912 3.69071 3.71336 3.72751 3.76387 3.88206 3.97401 4.08198 4.18165 4.24395 4.26465 4.28272 4.33804 4.38151 4.53835 4.56873 4.59460 4.65146 4.67968 4.69671 4.78113 4.78792 4.80916 4.92968 4.98736 5.01492 5.09433 5.17589 5.33962 5.35492 5.50145 5.65095 5.81701 5.83325 5.89392 6.34843 6.43409 6.49029 7.20693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.109 3.891 4 C -0.222 4.222 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.033 4.033 8 C -0.077 4.077 9 H 0.106 0.894 10 C -0.131 4.131 11 C 0.132 3.868 12 H 0.112 0.888 13 N -0.568 5.568 14 C 0.092 3.908 15 C 0.551 3.449 16 N -0.586 5.586 17 C 0.212 3.788 18 C -0.285 4.285 19 C -0.056 4.056 20 O -0.547 6.547 21 Si 0.760 3.240 22 C 0.194 3.806 23 N -0.577 5.577 24 C -0.133 4.133 25 C -0.169 4.169 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.182 0.818 38 H 0.132 0.868 39 H 0.385 0.615 40 H -0.281 1.281 41 H -0.300 1.300 42 H 0.188 0.812 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 3.065 -1.691 4.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.064 3.936 4 C -0.241 4.241 5 C -0.100 4.100 6 C -0.175 4.175 7 C -0.033 4.033 8 C -0.095 4.095 9 H 0.124 0.876 10 C -0.169 4.169 11 C 0.028 3.972 12 H 0.130 0.870 13 N -0.282 5.282 14 C -0.050 4.050 15 C 0.196 3.804 16 N -0.308 5.308 17 C 0.045 3.955 18 C -0.294 4.294 19 C -0.166 4.166 20 O -0.355 6.355 21 Si 0.665 3.335 22 C 0.027 3.973 23 N -0.299 5.299 24 C -0.172 4.172 25 C -0.188 4.188 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.199 0.801 38 H 0.149 0.851 39 H 0.234 0.766 40 H -0.208 1.208 41 H -0.228 1.228 42 H 0.205 0.795 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.530 2.825 -1.789 4.862 hybrid contribution 0.533 -0.803 1.234 1.566 sum -2.997 2.021 -0.555 3.657 Atomic orbital electron populations 1.23293 0.76630 1.05359 1.02134 1.86040 1.23313 1.27400 1.88814 1.19282 0.92746 0.84704 0.96846 1.21492 1.00918 0.92419 1.09234 1.21264 0.95009 0.97526 0.96222 1.21190 0.93747 0.98724 1.03889 1.19620 0.95373 0.91950 0.96373 1.21851 0.90025 0.99831 0.97774 0.87612 1.23504 0.97205 0.98803 0.97369 1.21984 0.82027 0.96187 0.97006 0.87024 1.45881 1.01325 1.15020 1.66018 1.21900 1.03836 0.80181 0.99105 1.19546 0.86864 0.85861 0.88081 1.68001 0.98934 1.38375 1.25523 1.23151 0.94352 0.92153 0.85859 1.21694 0.98141 0.98617 1.10911 1.24858 0.92040 1.04620 0.95117 1.86581 1.49915 1.71445 1.27546 0.94307 0.78664 0.75659 0.84839 1.23186 0.86059 0.99239 0.88802 1.67934 1.30338 1.11677 1.19907 1.23462 0.97791 0.99836 0.96139 1.20490 0.91546 0.98839 1.07894 0.91780 0.86737 0.91859 0.84241 0.83662 0.83823 0.86823 0.90475 0.92879 0.88853 0.90796 0.80117 0.85072 0.76589 1.20774 1.22756 0.79546 0.92115 0.87778 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.10 10.50 -92.43 -0.97 -3.07 16 3 C 0.11 0.63 6.69 22.51 0.15 0.78 16 4 C -0.22 -0.53 9.04 22.36 0.20 -0.33 16 5 C -0.08 -0.01 10.04 22.25 0.22 0.21 16 6 C -0.16 0.05 8.59 22.29 0.19 0.25 16 7 C -0.03 -0.05 5.29 -19.88 -0.11 -0.15 16 8 C -0.08 0.12 3.31 -11.02 -0.04 0.09 16 9 H 0.11 -0.19 5.50 -2.39 -0.01 -0.21 16 10 C -0.13 0.41 6.67 31.12 0.21 0.61 16 11 C 0.13 -0.03 4.48 45.52 0.20 0.18 16 12 H 0.11 0.11 7.11 -2.39 -0.02 0.09 16 13 N -0.57 -1.73 3.18 -708.66 -2.26 -3.99 16 14 C 0.09 0.03 8.84 127.77 1.13 1.16 16 15 C 0.55 3.55 8.17 261.49 2.14 5.69 16 16 N -0.59 -3.81 9.11 -197.98 -1.80 -5.61 16 17 C 0.21 0.52 10.92 84.71 0.93 1.44 16 18 C -0.29 0.10 5.40 -19.69 -0.11 0.00 16 19 C -0.06 0.16 2.85 71.24 0.20 0.37 16 20 O -0.55 -0.19 12.79 -148.98 -1.91 -2.10 16 21 Si 0.76 -3.06 29.87 68.60 2.05 -1.01 16 22 C 0.19 0.09 9.92 84.72 0.84 0.93 16 23 N -0.58 -2.93 9.00 -197.98 -1.78 -4.72 16 24 C -0.13 0.12 7.21 31.12 0.22 0.35 16 25 C -0.17 -0.82 9.65 22.37 0.22 -0.60 16 26 H 0.06 -0.23 7.66 -2.38 -0.02 -0.24 16 27 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 29 H 0.14 -0.18 6.30 -2.91 -0.02 -0.20 16 30 H 0.15 -0.65 8.06 -2.91 -0.02 -0.68 16 31 H 0.14 -0.67 6.67 -2.91 -0.02 -0.69 16 32 H 0.11 -0.61 6.32 -2.39 -0.02 -0.63 16 33 H 0.08 -0.19 7.36 -2.38 -0.02 -0.21 16 34 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.09 -0.28 4.83 -2.38 -0.01 -0.29 16 36 H 0.07 0.16 7.33 -2.39 -0.02 0.15 16 37 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 38 H 0.13 -0.68 7.96 -2.39 -0.02 -0.70 16 39 H 0.38 -1.72 8.70 -74.06 -0.64 -2.37 16 40 H -0.28 0.02 7.11 99.48 0.71 0.73 16 41 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 42 H 0.19 -0.96 5.04 -2.91 -0.01 -0.98 16 43 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.10 -0.24 7.71 -2.39 -0.02 -0.26 16 45 H 0.13 0.50 8.05 -2.91 -0.02 0.48 16 Total: 0.00 -17.33 360.31 1.47 -15.85 By element: Atomic # 1 Polarization: -7.83 SS G_CDS: 0.42 Total: -7.41 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 7.72 Total: 12.05 kcal Atomic # 7 Polarization: -8.47 SS G_CDS: -5.84 Total: -14.32 kcal Atomic # 8 Polarization: -2.29 SS G_CDS: -2.88 Total: -5.17 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.05 Total: -1.01 kcal Total: -17.33 1.47 -15.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860588_12175864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.072 kcal (2) G-P(sol) polarization free energy of solvation -17.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds