Wall clock time and date at job start Mon Mar 8 2021 03:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00222 * 2 1 4 4 C 1.38705 * 120.05445 * 359.97438 * 3 2 1 5 5 C 1.38170 * 119.94386 * 179.97438 * 4 3 2 6 6 C 1.38250 * 120.05439 * 0.02562 * 5 4 3 7 7 C 1.38286 * 120.10897 * 359.95778 * 6 5 4 8 8 C 1.50710 * 119.96667 * 180.02562 * 7 6 5 9 9 H 1.08996 * 112.84595 * 168.79817 * 8 7 6 10 10 C 1.53777 * 113.61149 * 299.99135 * 8 7 6 11 11 C 1.53785 * 87.07782 * 140.07071 * 10 8 7 12 12 H 1.09005 * 113.61366 * 219.93820 * 11 10 8 13 13 N 1.46496 * 113.61769 * 89.11541 * 11 10 8 14 14 C 1.46498 * 120.00227 * 245.95085 * 13 11 10 15 15 C 1.39005 * 119.99577 * 65.94618 * 13 11 10 16 16 N 1.32395 * 119.70759 * 4.98368 * 15 13 11 17 17 C 1.31973 * 121.62118 * 179.69733 * 16 15 13 18 18 C 1.38024 * 120.85478 * 0.58935 * 17 16 15 19 19 C 1.50701 * 120.33467 * 179.72517 * 18 17 16 20 20 O 1.42902 * 109.47224 * 119.71845 * 19 18 17 21 21 Si 1.86306 * 109.47071 * 359.71856 * 19 18 17 22 22 C 1.38878 * 119.33041 * 359.44875 * 18 17 16 23 23 C 1.38304 * 118.50691 * 0.24782 * 22 18 17 24 24 C 1.53784 * 113.69157 * 37.53162 * 8 7 6 25 25 C 1.38122 * 120.05990 * 0.26968 * 7 6 5 26 26 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46725 * 300.00394 * 1 2 3 28 28 H 1.08997 * 109.46784 * 59.99615 * 1 2 3 29 29 H 1.08003 * 120.03006 * 359.95871 * 4 3 2 30 30 H 1.07997 * 119.97258 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.94024 * 179.97438 * 6 5 4 32 32 H 1.09001 * 113.61603 * 25.52155 * 10 8 7 33 33 H 1.08998 * 113.69250 * 254.62591 * 10 8 7 34 34 H 1.09000 * 109.46833 * 275.19295 * 14 13 11 35 35 H 1.09004 * 109.46746 * 35.18673 * 14 13 11 36 36 H 1.08999 * 109.47275 * 155.18428 * 14 13 11 37 37 H 1.08000 * 119.57035 * 180.28419 * 17 16 15 38 38 H 1.08999 * 109.47165 * 239.71759 * 19 18 17 39 39 H 0.96701 * 113.99448 * 299.99862 * 20 19 18 40 40 H 1.48496 * 109.99829 * 58.68141 * 21 19 18 41 41 H 1.48499 * 109.99782 * 179.97438 * 21 19 18 42 42 H 1.07995 * 120.74954 * 180.28411 * 22 18 17 43 43 H 1.07999 * 120.45381 * 179.97438 * 23 22 18 44 44 H 1.08995 * 113.61425 * 105.45757 * 24 8 7 45 45 H 1.09000 * 113.61282 * 334.55613 * 24 8 7 46 46 H 1.07997 * 120.02588 * 179.72560 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3749 -0.0005 5 6 1.9214 3.6047 0.0000 6 6 3.3021 3.6757 0.0005 7 6 4.0563 2.5166 0.0014 8 6 5.5612 2.5977 0.0026 9 1 6.0366 1.6366 0.1983 10 6 6.1393 3.3338 -1.2175 11 6 7.1535 3.9716 -0.2533 12 1 7.3515 5.0233 -0.4609 13 7 8.3776 3.1848 -0.0843 14 6 8.6866 2.5806 1.2141 15 6 9.2458 3.0114 -1.1559 16 7 9.0128 3.6402 -2.2974 17 6 9.8153 3.5076 -3.3367 18 6 10.9276 2.6928 -3.2728 19 6 11.8326 2.5451 -4.4688 20 8 13.1488 2.9846 -4.1273 21 14 11.1780 3.5782 -5.8742 22 6 11.2075 2.0150 -2.0935 23 6 10.3519 2.1784 -1.0192 24 6 6.1175 3.7462 0.8606 25 6 3.4316 1.2847 -0.0039 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2131 2.3200 -0.0016 30 1 1.3346 4.5113 -0.0008 31 1 3.7924 4.6380 0.0005 32 1 5.4492 4.0507 -1.6623 33 1 6.5941 2.6712 -1.9538 34 1 9.1911 3.3127 1.8446 35 1 7.7621 2.2619 1.6957 36 1 9.3362 1.7177 1.0679 37 1 9.5961 4.0397 -4.2507 38 1 11.8662 1.4987 -4.7720 39 1 13.1944 3.9090 -3.8473 40 1 11.0974 5.0027 -5.4627 41 1 12.0621 3.4417 -7.0595 42 1 12.0741 1.3752 -2.0167 43 1 10.5393 1.6660 -0.0872 44 1 6.5544 3.4154 1.8028 45 1 5.4213 4.5759 0.9839 46 1 4.0212 0.3799 -0.0076 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10860588_13915762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:38:18 Heat of formation + Delta-G solvation = 48.681947 kcal Electronic energy + Delta-G solvation = -27171.321582 eV Core-core repulsion = 23415.598208 eV Total energy + Delta-G solvation = -3755.723374 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84045 -41.14091 -40.25905 -38.35099 -37.73691 -35.83954 -33.43218 -32.32628 -31.62974 -30.86050 -28.67210 -28.28043 -26.71688 -26.32708 -24.97874 -24.45649 -23.52739 -22.65091 -21.76680 -20.09903 -18.94189 -18.57782 -17.91478 -17.58310 -17.19635 -16.98468 -16.66314 -16.63899 -16.30471 -16.16747 -15.96815 -15.68665 -15.28421 -14.96728 -14.44431 -14.32103 -14.15505 -14.10441 -14.07529 -13.87701 -13.62511 -13.31316 -13.21218 -12.96876 -12.86051 -12.61666 -12.36476 -12.26965 -11.95712 -11.89726 -11.63902 -11.62002 -11.33685 -10.83746 -10.63081 -10.48126 -10.24631 -9.69290 -9.09634 -8.49811 -4.92361 0.29237 0.37788 0.48240 0.54190 1.34041 1.63120 1.84606 2.00663 2.33876 2.78784 2.90372 3.36606 3.42745 3.50388 3.59004 3.74196 3.82555 3.88283 3.95295 4.05925 4.06544 4.10907 4.16396 4.18583 4.20564 4.22006 4.28496 4.37179 4.42093 4.52969 4.57201 4.60441 4.63842 4.67333 4.73053 4.76459 4.79030 4.91251 4.95856 5.04477 5.13732 5.16438 5.28225 5.35943 5.38725 5.52680 5.58310 5.70377 5.84007 5.96221 6.39681 6.45249 6.47512 7.20053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.214 4.214 5 C -0.077 4.077 6 C -0.154 4.154 7 C -0.030 4.030 8 C -0.072 4.072 9 H 0.096 0.904 10 C -0.125 4.125 11 C 0.140 3.860 12 H 0.084 0.916 13 N -0.595 5.595 14 C 0.085 3.915 15 C 0.411 3.589 16 N -0.531 5.531 17 C 0.155 3.845 18 C -0.235 4.235 19 C -0.058 4.058 20 O -0.532 6.532 21 Si 0.677 3.323 22 C -0.006 4.006 23 C -0.241 4.241 24 C -0.141 4.141 25 C -0.149 4.149 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.116 0.884 39 H 0.375 0.625 40 H -0.258 1.258 41 H -0.256 1.256 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 -0.169 1.944 3.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.173 4.173 7 C -0.030 4.030 8 C -0.091 4.091 9 H 0.115 0.885 10 C -0.163 4.163 11 C 0.036 3.964 12 H 0.101 0.899 13 N -0.308 5.308 14 C -0.058 4.058 15 C 0.177 3.823 16 N -0.247 5.247 17 C -0.003 4.003 18 C -0.240 4.240 19 C -0.169 4.169 20 O -0.339 6.339 21 Si 0.579 3.421 22 C -0.031 4.031 23 C -0.265 4.265 24 C -0.178 4.178 25 C -0.168 4.168 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.222 0.778 40 H -0.183 1.183 41 H -0.181 1.181 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.099 0.901 45 H 0.119 0.881 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.662 0.238 1.353 3.911 hybrid contribution 1.136 0.087 0.848 1.420 sum -2.526 0.325 2.201 3.366 Atomic orbital electron populations 1.23081 0.78127 1.04164 1.01424 1.86079 1.21587 1.26933 1.88595 1.19035 0.92304 0.84248 0.95990 1.21257 1.00120 0.92463 1.09389 1.20940 0.94582 0.97027 0.96921 1.20905 0.93605 0.98095 1.04653 1.19482 0.94804 0.92123 0.96628 1.21584 0.90501 0.99000 0.97991 0.88548 1.23279 0.97257 0.99719 0.96078 1.21720 0.82922 0.94929 0.96834 0.89860 1.46058 1.21048 1.55433 1.08310 1.21859 1.02033 0.98302 0.83597 1.18305 0.87631 0.89434 0.86913 1.67225 1.32237 1.25638 0.99622 1.22234 0.89149 0.93473 0.95420 1.20918 1.00462 1.04649 0.97993 1.24747 0.84564 1.06765 1.00846 1.86589 1.27021 1.32318 1.87930 0.95175 0.88990 0.80031 0.77936 1.21162 0.96712 0.94408 0.90848 1.21514 0.98103 1.05294 1.01599 1.23511 0.97597 0.99076 0.97656 1.20300 0.91287 0.98235 1.06947 0.88070 0.92576 0.92545 0.85529 0.85694 0.85755 0.88904 0.90498 0.92588 0.90388 0.90651 0.82932 0.86642 0.77750 1.18328 1.18139 0.84731 0.84757 0.90086 0.88130 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.32 -0.85 10.50 -19.42 -0.20 -1.05 16 3 C 0.13 0.34 6.69 -39.22 -0.26 0.08 16 4 C -0.21 -0.28 9.04 -39.43 -0.36 -0.64 16 5 C -0.08 -0.05 10.04 -39.60 -0.40 -0.44 16 6 C -0.15 -0.07 8.61 -39.56 -0.34 -0.41 16 7 C -0.03 -0.03 5.29 -104.64 -0.55 -0.58 16 8 C -0.07 0.03 3.75 -90.95 -0.34 -0.31 16 9 H 0.10 -0.01 7.99 -51.93 -0.41 -0.43 16 10 C -0.12 -0.02 6.91 -25.92 -0.18 -0.20 16 11 C 0.14 -0.02 4.06 -67.12 -0.27 -0.29 16 12 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 13 N -0.60 -0.14 3.12 -173.15 -0.54 -0.68 16 14 C 0.08 -0.18 9.80 59.85 0.59 0.41 16 15 C 0.41 0.76 7.03 -155.02 -1.09 -0.33 16 16 N -0.53 -1.38 8.94 -12.44 -0.11 -1.50 16 17 C 0.16 0.19 9.84 -17.57 -0.17 0.02 16 18 C -0.23 -0.17 5.40 -104.46 -0.56 -0.74 16 19 C -0.06 0.00 2.84 36.01 0.10 0.10 16 20 O -0.53 -0.77 12.78 -35.23 -0.45 -1.22 16 21 Si 0.68 -0.40 29.82 -169.99 -5.07 -5.47 16 22 C -0.01 0.00 9.77 -39.32 -0.38 -0.39 16 23 C -0.24 -0.19 9.29 -39.22 -0.36 -0.56 16 24 C -0.14 0.22 6.58 -25.92 -0.17 0.05 16 25 C -0.15 -0.33 9.65 -39.43 -0.38 -0.71 16 26 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 27 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 28 H 0.06 -0.10 7.66 -51.93 -0.40 -0.49 16 29 H 0.13 -0.05 6.30 -52.48 -0.33 -0.38 16 30 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 31 H 0.12 -0.15 6.66 -52.48 -0.35 -0.50 16 32 H 0.09 0.00 7.72 -51.93 -0.40 -0.40 16 33 H 0.08 0.15 7.54 -51.93 -0.39 -0.24 16 34 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.08 -0.23 5.63 -51.93 -0.29 -0.53 16 36 H 0.07 -0.21 5.73 -51.93 -0.30 -0.51 16 37 H 0.15 -0.09 4.88 -52.49 -0.26 -0.34 16 38 H 0.12 -0.07 7.96 -51.93 -0.41 -0.49 16 39 H 0.37 -0.43 8.70 45.56 0.40 -0.04 16 40 H -0.26 -0.36 7.11 56.52 0.40 0.04 16 41 H -0.26 -0.69 7.11 56.52 0.40 -0.29 16 42 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 43 H 0.13 -0.14 5.93 -52.49 -0.31 -0.45 16 44 H 0.08 -0.18 5.81 -51.93 -0.30 -0.48 16 45 H 0.10 -0.21 6.32 -51.93 -0.33 -0.54 16 46 H 0.13 0.20 8.05 -52.49 -0.42 -0.22 16 LS Contribution 364.84 15.07 5.50 5.50 Total: 0.00 -6.59 364.84 -11.25 -17.84 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: -6.22 Total: -9.43 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -4.15 Total: -3.98 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -0.65 Total: -2.18 kcal Atomic # 8 Polarization: -1.62 SS G_CDS: -0.65 Total: -2.27 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: -5.07 Total: -5.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -6.59 -11.25 -17.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860588_13915762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.521 kcal (2) G-P(sol) polarization free energy of solvation -6.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds