Wall clock time and date at job start Mon Mar 8 2021 03:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00222 * 2 1 4 4 C 1.38705 * 120.05445 * 359.97438 * 3 2 1 5 5 C 1.38170 * 119.94386 * 179.97438 * 4 3 2 6 6 C 1.38250 * 120.05439 * 0.02562 * 5 4 3 7 7 C 1.38286 * 120.10897 * 359.95778 * 6 5 4 8 8 C 1.50710 * 119.96667 * 180.02562 * 7 6 5 9 9 H 1.08996 * 112.84595 * 168.79817 * 8 7 6 10 10 C 1.53777 * 113.61149 * 299.99135 * 8 7 6 11 11 C 1.53785 * 87.07782 * 140.07071 * 10 8 7 12 12 H 1.09005 * 113.61366 * 219.93820 * 11 10 8 13 13 N 1.46496 * 113.61769 * 89.11541 * 11 10 8 14 14 C 1.46498 * 120.00227 * 245.95085 * 13 11 10 15 15 C 1.39005 * 119.99577 * 65.94618 * 13 11 10 16 16 N 1.32395 * 119.70759 * 4.98368 * 15 13 11 17 17 C 1.31973 * 121.62118 * 179.69733 * 16 15 13 18 18 C 1.38024 * 120.85478 * 0.58935 * 17 16 15 19 19 C 1.50701 * 120.33467 * 179.72517 * 18 17 16 20 20 O 1.42902 * 109.47224 * 119.71845 * 19 18 17 21 21 Si 1.86306 * 109.47071 * 359.71856 * 19 18 17 22 22 C 1.38878 * 119.33041 * 359.44875 * 18 17 16 23 23 C 1.38304 * 118.50691 * 0.24782 * 22 18 17 24 24 C 1.53784 * 113.69157 * 37.53162 * 8 7 6 25 25 C 1.38122 * 120.05990 * 0.26968 * 7 6 5 26 26 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46725 * 300.00394 * 1 2 3 28 28 H 1.08997 * 109.46784 * 59.99615 * 1 2 3 29 29 H 1.08003 * 120.03006 * 359.95871 * 4 3 2 30 30 H 1.07997 * 119.97258 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.94024 * 179.97438 * 6 5 4 32 32 H 1.09001 * 113.61603 * 25.52155 * 10 8 7 33 33 H 1.08998 * 113.69250 * 254.62591 * 10 8 7 34 34 H 1.09000 * 109.46833 * 275.19295 * 14 13 11 35 35 H 1.09004 * 109.46746 * 35.18673 * 14 13 11 36 36 H 1.08999 * 109.47275 * 155.18428 * 14 13 11 37 37 H 1.08000 * 119.57035 * 180.28419 * 17 16 15 38 38 H 1.08999 * 109.47165 * 239.71759 * 19 18 17 39 39 H 0.96701 * 113.99448 * 299.99862 * 20 19 18 40 40 H 1.48496 * 109.99829 * 58.68141 * 21 19 18 41 41 H 1.48499 * 109.99782 * 179.97438 * 21 19 18 42 42 H 1.07995 * 120.74954 * 180.28411 * 22 18 17 43 43 H 1.07999 * 120.45381 * 179.97438 * 23 22 18 44 44 H 1.08995 * 113.61425 * 105.45757 * 24 8 7 45 45 H 1.09000 * 113.61282 * 334.55613 * 24 8 7 46 46 H 1.07997 * 120.02588 * 179.72560 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3749 -0.0005 5 6 1.9214 3.6047 0.0000 6 6 3.3021 3.6757 0.0005 7 6 4.0563 2.5166 0.0014 8 6 5.5612 2.5977 0.0026 9 1 6.0366 1.6366 0.1983 10 6 6.1393 3.3338 -1.2175 11 6 7.1535 3.9716 -0.2533 12 1 7.3515 5.0233 -0.4609 13 7 8.3776 3.1848 -0.0843 14 6 8.6866 2.5806 1.2141 15 6 9.2458 3.0114 -1.1559 16 7 9.0128 3.6402 -2.2974 17 6 9.8153 3.5076 -3.3367 18 6 10.9276 2.6928 -3.2728 19 6 11.8326 2.5451 -4.4688 20 8 13.1488 2.9846 -4.1273 21 14 11.1780 3.5782 -5.8742 22 6 11.2075 2.0150 -2.0935 23 6 10.3519 2.1784 -1.0192 24 6 6.1175 3.7462 0.8606 25 6 3.4316 1.2847 -0.0039 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2131 2.3200 -0.0016 30 1 1.3346 4.5113 -0.0008 31 1 3.7924 4.6380 0.0005 32 1 5.4492 4.0507 -1.6623 33 1 6.5941 2.6712 -1.9538 34 1 9.1911 3.3127 1.8446 35 1 7.7621 2.2619 1.6957 36 1 9.3362 1.7177 1.0679 37 1 9.5961 4.0397 -4.2507 38 1 11.8662 1.4987 -4.7720 39 1 13.1944 3.9090 -3.8473 40 1 11.0974 5.0027 -5.4627 41 1 12.0621 3.4417 -7.0595 42 1 12.0741 1.3752 -2.0167 43 1 10.5393 1.6660 -0.0872 44 1 6.5544 3.4154 1.8028 45 1 5.4213 4.5759 0.9839 46 1 4.0212 0.3799 -0.0076 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860588_13915762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:38:17 Heat of formation + Delta-G solvation = 54.692881 kcal Electronic energy + Delta-G solvation = -27171.060929 eV Core-core repulsion = 23415.598208 eV Total energy + Delta-G solvation = -3755.462721 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.84688 -41.18016 -40.27756 -38.38345 -37.78467 -35.82893 -33.47743 -32.35605 -31.64922 -30.87257 -28.60285 -28.23356 -26.71201 -26.30318 -24.96932 -24.48571 -23.56884 -22.67587 -21.78232 -20.08828 -18.95750 -18.61638 -17.91336 -17.60786 -17.22940 -16.99363 -16.68247 -16.65550 -16.33046 -16.18532 -15.96620 -15.68870 -15.27727 -14.94621 -14.47133 -14.38268 -14.13660 -14.09867 -14.07352 -13.87451 -13.58129 -13.35067 -13.17662 -12.92386 -12.79072 -12.58565 -12.38436 -12.25719 -12.00645 -11.94409 -11.62049 -11.61223 -11.30658 -10.87607 -10.66410 -10.51932 -10.30839 -9.74590 -9.15674 -8.49623 -4.91381 0.24675 0.32871 0.43337 0.47798 1.34039 1.60350 1.89808 1.96157 2.34845 2.74048 2.85113 3.38846 3.45928 3.53267 3.61864 3.74542 3.80772 3.88273 3.97829 4.05430 4.10353 4.14248 4.18472 4.25535 4.27850 4.34366 4.34522 4.38671 4.53191 4.56642 4.63264 4.67064 4.68886 4.70808 4.78576 4.80851 4.84492 4.96087 5.03099 5.03614 5.10905 5.13340 5.29644 5.33752 5.34794 5.50090 5.57669 5.67407 5.83280 6.01062 6.38261 6.43559 6.50408 7.15942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.110 3.890 4 C -0.222 4.222 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.032 4.032 8 C -0.067 4.067 9 H 0.092 0.908 10 C -0.121 4.121 11 C 0.139 3.861 12 H 0.074 0.926 13 N -0.597 5.597 14 C 0.080 3.920 15 C 0.396 3.604 16 N -0.552 5.552 17 C 0.144 3.856 18 C -0.235 4.235 19 C -0.062 4.062 20 O -0.549 6.549 21 Si 0.754 3.246 22 C -0.013 4.013 23 C -0.244 4.244 24 C -0.128 4.128 25 C -0.170 4.170 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.165 0.835 38 H 0.124 0.876 39 H 0.384 0.616 40 H -0.284 1.284 41 H -0.301 1.301 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 0.205 2.747 4.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.065 3.935 4 C -0.240 4.240 5 C -0.100 4.100 6 C -0.176 4.176 7 C -0.032 4.032 8 C -0.085 4.085 9 H 0.110 0.890 10 C -0.160 4.160 11 C 0.035 3.965 12 H 0.092 0.908 13 N -0.310 5.310 14 C -0.062 4.062 15 C 0.162 3.838 16 N -0.269 5.269 17 C -0.013 4.013 18 C -0.240 4.240 19 C -0.172 4.172 20 O -0.357 6.357 21 Si 0.660 3.340 22 C -0.038 4.038 23 C -0.268 4.268 24 C -0.165 4.165 25 C -0.188 4.188 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.182 0.818 38 H 0.142 0.858 39 H 0.233 0.767 40 H -0.210 1.210 41 H -0.229 1.229 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.112 0.602 2.185 4.695 hybrid contribution 1.275 -0.021 0.578 1.400 sum -2.837 0.581 2.762 4.002 Atomic orbital electron populations 1.23297 0.76600 1.05369 1.02159 1.86040 1.23340 1.27361 1.88797 1.19269 0.92676 0.84744 0.96783 1.21488 1.00934 0.92355 1.09234 1.21265 0.94954 0.97562 0.96178 1.21164 0.93778 0.98623 1.04002 1.19624 0.95409 0.91937 0.96267 1.21517 0.89738 0.99216 0.98057 0.88984 1.23219 0.97444 0.99479 0.95851 1.21698 0.83053 0.94365 0.97390 0.90761 1.46224 1.20827 1.55333 1.08648 1.22015 1.02826 0.98640 0.82684 1.18580 0.88320 0.89782 0.87168 1.67223 1.32969 1.26455 1.00267 1.22464 0.89326 0.93793 0.95704 1.20953 1.00330 1.04507 0.98250 1.24885 0.84033 1.07494 1.00790 1.86559 1.27747 1.33320 1.88081 0.94250 0.87325 0.77692 0.74710 1.21357 0.97041 0.94524 0.90911 1.21716 0.97715 1.05091 1.02325 1.23475 0.96911 0.98669 0.97448 1.20466 0.91575 0.98753 1.08045 0.86727 0.91755 0.91835 0.84144 0.83628 0.83971 0.88730 0.92488 0.92055 0.89378 0.89898 0.81828 0.85826 0.76663 1.21050 1.22867 0.83822 0.83130 0.89045 0.87131 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.16 10.50 -92.42 -0.97 -3.13 16 3 C 0.11 0.67 6.69 22.51 0.15 0.83 16 4 C -0.22 -0.58 9.04 22.37 0.20 -0.38 16 5 C -0.08 -0.04 10.04 22.26 0.22 0.18 16 6 C -0.16 -0.04 8.61 22.28 0.19 0.15 16 7 C -0.03 -0.07 5.29 -19.88 -0.11 -0.17 16 8 C -0.07 0.04 3.75 -11.01 -0.04 0.00 16 9 H 0.09 0.03 7.99 -2.39 -0.02 0.01 16 10 C -0.12 -0.11 6.91 31.12 0.22 0.10 16 11 C 0.14 -0.03 4.06 45.52 0.18 0.15 16 12 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 13 N -0.60 -0.31 3.12 -701.71 -2.19 -2.50 16 14 C 0.08 -0.39 9.80 127.77 1.25 0.87 16 15 C 0.40 1.60 7.03 133.06 0.94 2.54 16 16 N -0.55 -3.29 8.94 -193.26 -1.73 -5.01 16 17 C 0.14 0.44 9.84 84.62 0.83 1.27 16 18 C -0.24 -0.39 5.40 -19.76 -0.11 -0.50 16 19 C -0.06 -0.01 2.84 71.24 0.20 0.19 16 20 O -0.55 -1.66 12.78 -148.98 -1.90 -3.57 16 21 Si 0.75 -0.52 29.82 68.60 2.05 1.53 16 22 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 23 C -0.24 -0.38 9.29 22.50 0.21 -0.17 16 24 C -0.13 0.49 6.58 31.12 0.20 0.70 16 25 C -0.17 -0.95 9.65 22.37 0.22 -0.73 16 26 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.06 -0.23 7.66 -2.38 -0.02 -0.25 16 28 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 29 H 0.14 -0.17 6.30 -2.91 -0.02 -0.19 16 30 H 0.15 -0.61 8.06 -2.91 -0.02 -0.64 16 31 H 0.14 -0.55 6.66 -2.91 -0.02 -0.57 16 32 H 0.09 0.03 7.72 -2.39 -0.02 0.01 16 33 H 0.06 0.30 7.54 -2.39 -0.02 0.28 16 34 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.09 -0.61 5.63 -2.39 -0.01 -0.62 16 36 H 0.08 -0.53 5.73 -2.39 -0.01 -0.54 16 37 H 0.17 -0.11 4.88 -2.91 -0.01 -0.12 16 38 H 0.12 -0.19 7.96 -2.39 -0.02 -0.21 16 39 H 0.38 -0.78 8.70 -74.06 -0.64 -1.42 16 40 H -0.28 -0.98 7.11 99.48 0.71 -0.27 16 41 H -0.30 -2.03 7.11 99.48 0.71 -1.32 16 42 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 43 H 0.15 -0.40 5.93 -2.91 -0.02 -0.42 16 44 H 0.09 -0.51 5.81 -2.39 -0.01 -0.53 16 45 H 0.11 -0.62 6.32 -2.39 -0.02 -0.64 16 46 H 0.12 0.64 8.05 -2.91 -0.02 0.61 16 Total: 0.00 -16.18 364.84 1.76 -14.42 By element: Atomic # 1 Polarization: -8.45 SS G_CDS: 0.40 Total: -8.04 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 6.10 Total: 6.31 kcal Atomic # 7 Polarization: -3.60 SS G_CDS: -3.92 Total: -7.51 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -2.87 Total: -6.69 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: 2.05 Total: 1.53 kcal Total: -16.18 1.76 -14.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860588_13915762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.113 kcal (2) G-P(sol) polarization free energy of solvation -16.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds