Wall clock time and date at job start Mon Mar 8 2021 03:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00295 * 2 1 4 4 C 1.38714 * 120.05395 * 359.97115 * 3 2 1 5 5 C 1.38164 * 119.94631 * 180.02562 * 4 3 2 6 6 C 1.38244 * 120.05267 * 359.75137 * 5 4 3 7 7 C 1.38287 * 120.11434 * 0.50863 * 6 5 4 8 8 C 1.50692 * 119.97395 * 179.76339 * 7 6 5 9 9 H 1.09006 * 112.85347 * 190.91532 * 8 7 6 10 10 C 1.53781 * 113.69400 * 322.18903 * 8 7 6 11 11 C 1.53778 * 87.08250 * 139.99069 * 10 8 7 12 12 H 1.09004 * 113.69285 * 220.00790 * 11 10 8 13 13 N 1.46504 * 113.61644 * 89.11888 * 11 10 8 14 14 C 1.46507 * 119.99672 * 322.50334 * 13 11 10 15 15 C 1.38608 * 120.00174 * 142.50150 * 13 11 10 16 16 N 1.29677 * 124.94973 * 359.97438 * 15 13 11 17 17 C 1.32124 * 116.86481 * 180.02562 * 16 15 13 18 18 C 1.33320 * 114.58045 * 0.02562 * 17 16 15 19 19 C 1.50700 * 125.95274 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.46747 * 245.02255 * 19 18 17 21 21 Si 1.86304 * 109.46981 * 5.01527 * 19 18 17 22 22 S 1.70974 * 124.94672 * 179.97438 * 15 13 11 23 23 C 1.53779 * 87.08334 * 334.56827 * 11 10 8 24 24 C 1.38128 * 120.05178 * 359.48849 * 7 6 5 25 25 H 1.09003 * 109.46859 * 300.00565 * 1 2 3 26 26 H 1.08994 * 109.47405 * 60.00240 * 1 2 3 27 27 H 1.08992 * 109.47338 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.02640 * 0.05459 * 4 3 2 29 29 H 1.08000 * 119.97774 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.94451 * 180.25183 * 6 5 4 31 31 H 1.09000 * 113.61106 * 25.44521 * 10 8 7 32 32 H 1.09003 * 113.61584 * 254.53898 * 10 8 7 33 33 H 1.09005 * 109.46707 * 269.99962 * 14 13 11 34 34 H 1.08995 * 109.46902 * 29.99428 * 14 13 11 35 35 H 1.08996 * 109.46732 * 150.00083 * 14 13 11 36 36 H 1.08004 * 122.70746 * 179.72660 * 17 16 15 37 37 H 1.08997 * 109.47532 * 125.02330 * 19 18 17 38 38 H 0.96702 * 113.99714 * 180.02562 * 20 19 18 39 39 H 1.48500 * 109.99916 * 178.68271 * 21 19 18 40 40 H 1.48494 * 110.00279 * 300.00391 * 21 19 18 41 41 H 1.09004 * 113.61429 * 139.97915 * 23 11 10 42 42 H 1.08999 * 113.61478 * 270.88352 * 23 11 10 43 43 H 1.07994 * 120.02507 * 180.27489 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3749 -0.0006 5 6 1.9213 3.6048 -0.0011 6 6 3.3019 3.6757 0.0041 7 6 4.0562 2.5167 -0.0007 8 6 5.5610 2.5978 -0.0003 9 1 6.0368 1.6365 -0.1945 10 6 6.1182 3.7455 -0.8588 11 6 7.1530 3.9721 0.2559 12 1 7.3508 5.0239 0.4627 13 7 8.3774 3.1852 0.0890 14 6 8.3040 1.8181 -0.4325 15 6 9.6052 3.7340 0.4245 16 7 9.7811 4.9306 0.8922 17 6 11.0241 5.2910 1.1580 18 6 11.9394 4.3559 0.9024 19 6 13.4257 4.4924 1.1101 20 8 14.0906 4.4332 -0.1535 21 14 13.7910 6.1259 1.9281 22 16 11.1083 2.9319 0.2819 23 6 6.1379 3.3352 1.2197 24 6 3.4315 1.2848 -0.0001 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.2131 2.3200 -0.0002 29 1 1.3345 4.5114 -0.0012 30 1 3.7923 4.6380 0.0078 31 1 5.4222 4.5750 -0.9836 32 1 6.5562 3.4138 -1.8002 33 1 8.1850 1.1192 0.3955 34 1 7.4516 1.7315 -1.1063 35 1 9.2207 1.5864 -0.9747 36 1 11.2787 6.2662 1.5462 37 1 13.7799 3.6806 1.7454 38 1 15.0525 4.5144 -0.0959 39 1 15.2505 6.2590 2.1673 40 1 13.3129 7.2409 1.0717 41 1 6.5918 2.6722 1.9562 42 1 5.4473 4.0526 1.6630 43 1 4.0211 0.3800 0.0006 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860588_15704118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:38:21 Heat of formation + Delta-G solvation = 61.814312 kcal Electronic energy + Delta-G solvation = -25374.247881 eV Core-core repulsion = 21708.246215 eV Total energy + Delta-G solvation = -3666.001666 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.74949 -40.88360 -40.23173 -38.31778 -37.86117 -35.81015 -32.26723 -31.85965 -30.99412 -28.76759 -28.20504 -26.81451 -26.68556 -25.18212 -24.24435 -23.57876 -22.22527 -21.30424 -19.56940 -19.23181 -18.82722 -18.56498 -17.44088 -17.24509 -16.90278 -16.67529 -16.54781 -16.39911 -16.10634 -15.70077 -15.46038 -15.10073 -14.72257 -14.56807 -14.41159 -14.14363 -14.01769 -13.97748 -13.61790 -13.28283 -13.17988 -13.11141 -12.88835 -12.62080 -12.39249 -12.19925 -12.10020 -12.03705 -11.63798 -11.53525 -11.27247 -10.91450 -10.61388 -10.47195 -10.15033 -9.74985 -9.15785 -8.61260 -4.90805 -0.10694 0.05171 0.32964 0.48140 0.69219 1.44093 1.61264 1.77547 1.87384 1.98839 2.35135 2.73878 3.34397 3.43264 3.52277 3.68123 3.72140 3.88288 3.94170 3.96629 4.07418 4.13228 4.17973 4.26600 4.27943 4.34468 4.35674 4.46448 4.54237 4.58533 4.63174 4.67396 4.69127 4.71278 4.78035 4.82582 4.94912 5.01918 5.06920 5.09556 5.26111 5.34351 5.49952 5.63130 5.77569 5.82896 5.99999 6.43746 6.57401 6.87704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.222 4.222 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.033 4.033 8 C -0.074 4.074 9 H 0.113 0.887 10 C -0.133 4.133 11 C 0.133 3.867 12 H 0.099 0.901 13 N -0.562 5.562 14 C 0.073 3.927 15 C 0.309 3.691 16 N -0.573 5.573 17 C 0.086 3.914 18 C -0.271 4.271 19 C -0.043 4.043 20 O -0.561 6.561 21 Si 0.779 3.221 22 S 0.127 5.873 23 C -0.131 4.131 24 C -0.166 4.166 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.187 0.813 37 H 0.093 0.907 38 H 0.397 0.603 39 H -0.275 1.275 40 H -0.296 1.296 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -1.459 1.817 3.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.241 4.241 5 C -0.101 4.101 6 C -0.177 4.177 7 C -0.033 4.033 8 C -0.092 4.092 9 H 0.130 0.870 10 C -0.172 4.172 11 C 0.026 3.974 12 H 0.117 0.883 13 N -0.279 5.279 14 C -0.069 4.069 15 C -0.060 4.060 16 N -0.298 5.298 17 C -0.065 4.065 18 C -0.394 4.394 19 C -0.153 4.153 20 O -0.372 6.372 21 Si 0.681 3.319 22 S 0.377 5.623 23 C -0.170 4.170 24 C -0.185 4.185 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.203 0.797 37 H 0.111 0.889 38 H 0.247 0.753 39 H -0.202 1.202 40 H -0.223 1.223 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.396 -1.761 1.224 3.216 hybrid contribution 0.660 0.477 -0.567 0.993 sum -1.735 -1.284 0.657 2.257 Atomic orbital electron populations 1.23288 0.76666 1.05371 1.02098 1.86038 1.23269 1.27329 1.88796 1.19285 0.92815 0.84646 0.96799 1.21486 1.00913 0.92433 1.09236 1.21244 0.95011 0.97533 0.96360 1.21173 0.93780 0.98751 1.04013 1.19610 0.95418 0.91895 0.96390 1.21858 0.89982 0.99829 0.97557 0.86953 1.23520 0.97199 0.98981 0.97480 1.21972 0.82373 0.95749 0.97267 0.88326 1.45794 1.00584 1.14740 1.66799 1.22267 1.04524 0.79855 1.00259 1.23854 0.92522 0.92646 0.96988 1.66428 1.23703 1.14872 1.24825 1.21526 0.85579 1.00236 0.99163 1.24984 0.99389 0.97968 1.17091 1.24325 0.87515 1.13632 0.89811 1.86569 1.25515 1.95684 1.29414 0.93917 0.80241 0.71841 0.85855 1.83870 0.96443 1.17210 1.64737 1.23450 0.97493 0.99854 0.96239 1.20494 0.91476 0.98844 1.07663 0.91886 0.91854 0.86690 0.84302 0.83891 0.84201 0.87314 0.90295 0.90751 0.87654 0.90971 0.79676 0.88887 0.75255 1.20157 1.22298 0.91247 0.88154 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.85 10.50 -92.42 -0.97 -2.82 16 3 C 0.11 0.56 6.69 22.51 0.15 0.71 16 4 C -0.22 -0.51 9.04 22.37 0.20 -0.30 16 5 C -0.08 -0.04 10.04 22.25 0.22 0.19 16 6 C -0.16 0.01 8.60 22.28 0.19 0.21 16 7 C -0.03 -0.02 5.29 -19.88 -0.11 -0.13 16 8 C -0.07 0.20 3.31 -11.01 -0.04 0.17 16 9 H 0.11 -0.50 5.50 -2.38 -0.01 -0.51 16 10 C -0.13 0.40 6.67 31.12 0.21 0.61 16 11 C 0.13 0.01 4.55 45.52 0.21 0.22 16 12 H 0.10 0.33 7.44 -2.38 -0.02 0.31 16 13 N -0.56 -0.90 3.19 -708.62 -2.26 -3.15 16 14 C 0.07 -0.26 8.81 127.77 1.13 0.86 16 15 C 0.31 1.92 7.75 179.32 1.39 3.30 16 16 N -0.57 -5.11 9.70 -202.03 -1.96 -7.07 16 17 C 0.09 0.55 10.07 83.54 0.84 1.39 16 18 C -0.27 -1.47 5.95 24.57 0.15 -1.33 16 19 C -0.04 -0.05 3.07 71.24 0.22 0.17 16 20 O -0.56 -2.03 12.86 -148.98 -1.92 -3.95 16 21 Si 0.78 -1.13 30.50 68.60 2.09 0.96 16 22 S 0.13 0.59 21.68 -56.49 -1.22 -0.63 16 23 C -0.13 0.21 7.21 31.12 0.22 0.44 16 24 C -0.17 -0.62 9.65 22.37 0.22 -0.41 16 25 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 26 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 27 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H 0.14 -0.18 6.30 -2.91 -0.02 -0.20 16 29 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 30 H 0.14 -0.52 6.68 -2.91 -0.02 -0.54 16 31 H 0.11 -0.46 6.33 -2.39 -0.02 -0.48 16 32 H 0.08 -0.23 7.36 -2.39 -0.02 -0.25 16 33 H 0.07 -0.40 8.14 -2.38 -0.02 -0.42 16 34 H 0.11 -0.68 4.83 -2.39 -0.01 -0.69 16 35 H 0.07 -0.26 7.04 -2.39 -0.02 -0.28 16 36 H 0.19 0.40 5.87 -2.91 -0.02 0.39 16 37 H 0.09 -0.25 7.96 -2.39 -0.02 -0.27 16 38 H 0.40 -2.02 8.74 -74.06 -0.65 -2.66 16 39 H -0.28 -0.40 7.11 99.48 0.71 0.30 16 40 H -0.30 -1.75 7.11 99.48 0.71 -1.05 16 41 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.10 -0.21 7.71 -2.39 -0.02 -0.23 16 43 H 0.13 0.28 8.05 -2.91 -0.02 0.26 16 Total: 0.00 -18.08 356.77 0.52 -17.56 By element: Atomic # 1 Polarization: -8.50 SS G_CDS: 0.44 Total: -8.06 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.32 Total: 7.17 kcal Atomic # 7 Polarization: -6.01 SS G_CDS: -4.22 Total: -10.23 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -2.89 Total: -6.77 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 2.09 Total: 0.96 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.22 Total: -0.63 kcal Total: -18.08 0.52 -17.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860588_15704118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.372 kcal (2) G-P(sol) polarization free energy of solvation -18.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds