Wall clock time and date at job start Mon Mar 8 2021 03:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00479 * 2 1 4 4 C 1.38715 * 120.05487 * 0.02562 * 3 2 1 5 5 C 1.38162 * 119.94397 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.05614 * 359.72736 * 5 4 3 7 7 C 1.38280 * 120.11054 * 0.54875 * 6 5 4 8 8 C 1.50700 * 119.97143 * 179.72678 * 7 6 5 9 9 H 1.09008 * 112.85066 * 190.91783 * 8 7 6 10 10 C 1.53771 * 113.69381 * 322.19112 * 8 7 6 11 11 C 1.53782 * 87.08476 * 139.98933 * 10 8 7 12 12 H 1.08999 * 113.61283 * 220.01758 * 11 10 8 13 13 N 1.46498 * 113.61054 * 89.12015 * 11 10 8 14 14 C 1.46499 * 120.00270 * 16.71089 * 13 11 10 15 15 C 1.38614 * 120.00085 * 196.71962 * 13 11 10 16 16 N 1.29677 * 124.95411 * 179.97438 * 15 13 11 17 17 C 1.32120 * 116.86830 * 179.97438 * 16 15 13 18 18 C 1.50707 * 122.71089 * 180.02562 * 17 16 15 19 19 O 1.42894 * 109.47326 * 304.61596 * 18 17 16 20 20 Si 1.86302 * 109.46858 * 64.61828 * 18 17 16 21 21 C 1.33329 * 114.57873 * 359.97438 * 17 16 15 22 22 C 1.50698 * 125.95093 * 180.02562 * 21 17 16 23 23 S 1.70973 * 124.94566 * 359.69054 * 15 13 11 24 24 C 1.53779 * 87.08000 * 334.56965 * 11 10 8 25 25 C 1.38123 * 120.05680 * 359.44989 * 7 6 5 26 26 H 1.08998 * 109.47574 * 59.99371 * 1 2 3 27 27 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46632 * 299.99970 * 1 2 3 29 29 H 1.08004 * 120.02438 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.96993 * 180.02562 * 5 4 3 31 31 H 1.08005 * 119.94176 * 180.29488 * 6 5 4 32 32 H 1.09002 * 113.61486 * 254.54511 * 10 8 7 33 33 H 1.09001 * 113.61515 * 25.44434 * 10 8 7 34 34 H 1.08999 * 109.46989 * 84.49851 * 14 13 11 35 35 H 1.09000 * 109.47524 * 204.49014 * 14 13 11 36 36 H 1.08998 * 109.47358 * 324.49711 * 14 13 11 37 37 H 1.08997 * 109.46981 * 184.61454 * 18 17 16 38 38 H 0.96704 * 114.00079 * 59.99348 * 19 18 17 39 39 H 1.48494 * 110.00080 * 58.67928 * 20 18 17 40 40 H 1.48498 * 109.99900 * 180.02562 * 20 18 17 41 41 H 1.09001 * 109.47363 * 84.46747 * 22 21 17 42 42 H 1.08999 * 109.47364 * 204.47161 * 22 21 17 43 43 H 1.09005 * 109.47165 * 324.46733 * 22 21 17 44 44 H 1.08996 * 113.60956 * 270.88051 * 24 11 10 45 45 H 1.08999 * 113.61234 * 139.98176 * 24 11 10 46 46 H 1.07999 * 120.02752 * 180.29619 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2918 2.3749 0.0005 5 6 1.9215 3.6047 0.0011 6 6 3.3021 3.6756 0.0068 7 6 4.0563 2.5166 0.0005 8 6 5.5611 2.5976 0.0005 9 1 6.0368 1.6365 -0.1949 10 6 6.1181 3.7462 -0.8569 11 6 7.1532 3.9716 0.2579 12 1 7.3500 5.0235 0.4648 13 7 8.3775 3.1848 0.0896 14 6 8.6892 2.5837 -1.2095 15 6 9.2409 3.0089 1.1596 16 7 10.3468 2.3329 1.1186 17 6 11.0494 2.2691 2.2357 18 6 12.3534 1.5203 2.3359 19 8 12.1579 0.1659 1.9244 20 14 13.6195 2.3278 1.2334 21 6 10.5121 2.9215 3.2668 22 6 11.0940 3.0171 4.6536 23 16 9.0063 3.6573 2.7241 24 6 6.1384 3.3336 1.2212 25 6 3.4316 1.2847 0.0000 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 0.2131 2.3200 0.0005 30 1 1.3346 4.5114 0.0019 31 1 3.7924 4.6379 0.0120 32 1 6.5557 3.4155 -1.7988 33 1 5.4221 4.5759 -0.9806 34 1 9.1904 3.3188 -1.8391 35 1 9.3430 1.7236 -1.0645 36 1 7.7663 2.2614 -1.6916 37 1 12.7049 1.5394 3.3675 38 1 11.8445 0.0727 1.0143 39 1 13.8086 3.7460 1.6310 40 1 14.9099 1.5984 1.3227 41 1 11.8185 3.8307 4.6884 42 1 10.2958 3.2104 5.3701 43 1 11.5888 2.0790 4.9054 44 1 5.4480 4.0505 1.6655 45 1 6.5925 2.6698 1.9569 46 1 4.0211 0.3798 -0.0001 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860588_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:38:24 Heat of formation + Delta-G solvation = 53.961638 kcal Electronic energy + Delta-G solvation = -27833.479982 eV Core-core repulsion = 24011.600180 eV Total energy + Delta-G solvation = -3821.879802 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.71106 -41.03970 -40.43411 -38.34364 -37.47132 -35.82153 -33.22850 -32.12886 -31.00067 -29.41113 -28.52732 -28.22933 -26.61625 -25.94767 -25.50016 -23.79624 -23.52957 -22.03431 -20.47714 -20.06197 -19.09906 -18.63016 -17.91609 -17.54159 -17.23779 -16.97114 -16.73483 -16.68285 -16.37761 -16.02662 -15.67932 -15.33913 -15.17513 -14.67154 -14.40352 -14.26490 -14.24601 -14.06845 -14.00319 -13.82926 -13.58915 -13.51178 -13.24485 -13.04598 -12.89845 -12.80244 -12.57202 -12.49016 -12.27872 -11.99486 -11.90742 -11.63531 -11.60691 -11.42775 -10.86947 -10.58185 -10.38709 -9.96109 -9.75072 -9.16112 -8.47152 -4.96840 -0.03736 0.16479 0.31924 0.47596 0.76340 1.22341 1.59193 1.73219 1.79814 2.02363 2.34279 2.72992 3.21155 3.39945 3.44402 3.66674 3.69024 3.87211 3.89461 3.97737 4.06775 4.15763 4.17731 4.25780 4.31131 4.33268 4.37590 4.40585 4.51220 4.55578 4.59354 4.64519 4.65719 4.69037 4.74748 4.79098 4.86334 4.90861 4.92983 4.96537 5.06715 5.11263 5.17824 5.22002 5.34194 5.49952 5.64305 5.83428 5.85100 6.01147 6.42959 6.63210 6.89714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.109 3.891 4 C -0.222 4.222 5 C -0.081 4.081 6 C -0.155 4.155 7 C -0.032 4.032 8 C -0.066 4.066 9 H 0.090 0.910 10 C -0.119 4.119 11 C 0.118 3.882 12 H 0.099 0.901 13 N -0.564 5.564 14 C 0.091 3.909 15 C 0.315 3.685 16 N -0.553 5.553 17 C 0.065 3.935 18 C -0.037 4.037 19 O -0.550 6.550 20 Si 0.775 3.225 21 C -0.279 4.279 22 C -0.072 4.072 23 S 0.114 5.886 24 C -0.143 4.143 25 C -0.171 4.171 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.393 0.607 39 H -0.292 1.292 40 H -0.278 1.278 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.062 0.938 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 4.016 -2.953 7.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.257 6.257 3 C 0.064 3.936 4 C -0.240 4.240 5 C -0.099 4.099 6 C -0.173 4.173 7 C -0.033 4.033 8 C -0.085 4.085 9 H 0.109 0.891 10 C -0.156 4.156 11 C 0.014 3.986 12 H 0.116 0.884 13 N -0.283 5.283 14 C -0.052 4.052 15 C -0.055 4.055 16 N -0.280 5.280 17 C -0.066 4.066 18 C -0.149 4.149 19 O -0.357 6.357 20 Si 0.679 3.321 21 C -0.402 4.402 22 C -0.131 4.131 23 S 0.365 5.635 24 C -0.181 4.181 25 C -0.189 4.189 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.166 0.834 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.242 0.758 39 H -0.219 1.219 40 H -0.204 1.204 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.648 4.500 -2.587 6.968 hybrid contribution 0.084 -0.768 0.728 1.062 sum -4.564 3.732 -1.859 6.181 Atomic orbital electron populations 1.23291 0.76606 1.05336 1.02164 1.86041 1.23341 1.27494 1.88809 1.19290 0.92713 0.84748 0.96864 1.21501 1.00917 0.92433 1.09165 1.21281 0.95097 0.97463 0.96081 1.21188 0.93665 0.98684 1.03764 1.19577 0.95269 0.91901 0.96506 1.21486 0.89914 0.99411 0.97674 0.89126 1.23439 0.96154 0.98792 0.97213 1.22191 0.82305 0.94736 0.99368 0.88352 1.45752 1.19757 1.55145 1.07619 1.21894 1.02314 0.98792 0.82216 1.23404 0.92372 0.96420 0.93330 1.65948 1.07272 1.26101 1.28719 1.20206 0.98663 1.00008 0.87708 1.24881 0.97575 0.86052 1.06424 1.86417 1.89578 1.23150 1.36538 0.93076 0.74491 0.75339 0.89208 1.25406 1.00850 1.11281 1.02657 1.20226 1.00809 1.03215 0.88869 1.83852 1.22305 1.53684 1.03649 1.23531 0.97993 1.00303 0.96318 1.20478 0.91566 0.98860 1.08041 0.91709 0.86823 0.91838 0.84270 0.83523 0.83352 0.88658 0.86049 0.91815 0.90639 0.89341 0.86164 0.75751 1.21852 1.20442 0.90388 0.90569 0.90174 0.86961 0.91961 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -2.08 10.50 -92.37 -0.97 -3.05 16 3 C 0.11 0.58 6.69 22.51 0.15 0.73 16 4 C -0.22 -0.33 9.04 22.37 0.20 -0.13 16 5 C -0.08 0.11 10.04 22.25 0.22 0.34 16 6 C -0.16 0.38 8.59 22.28 0.19 0.57 16 7 C -0.03 0.00 5.29 -19.88 -0.11 -0.10 16 8 C -0.07 0.21 3.76 -11.02 -0.04 0.17 16 9 H 0.09 -0.10 8.00 -2.38 -0.02 -0.12 16 10 C -0.12 0.88 6.58 31.12 0.20 1.09 16 11 C 0.12 -0.55 4.00 45.52 0.18 -0.37 16 12 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 13 N -0.56 0.44 3.11 -708.64 -2.20 -1.77 16 14 C 0.09 -0.34 10.01 127.77 1.28 0.94 16 15 C 0.31 1.28 7.46 179.32 1.34 2.62 16 16 N -0.55 -3.32 9.21 -189.85 -1.75 -5.07 16 17 C 0.06 0.42 4.97 41.41 0.21 0.62 16 18 C -0.04 -0.17 2.88 71.24 0.20 0.03 16 19 O -0.55 -3.24 12.88 -148.98 -1.92 -5.16 16 20 Si 0.77 2.41 32.90 68.60 2.26 4.66 16 21 C -0.28 -1.56 6.57 24.57 0.16 -1.39 16 22 C -0.07 -0.09 9.80 71.24 0.70 0.60 16 23 S 0.11 0.37 20.92 -56.49 -1.18 -0.81 16 24 C -0.14 0.48 6.67 31.12 0.21 0.69 16 25 C -0.17 -0.77 9.65 22.37 0.22 -0.56 16 26 H 0.06 -0.25 7.66 -2.39 -0.02 -0.27 16 27 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.06 -0.23 7.66 -2.38 -0.02 -0.25 16 29 H 0.14 -0.28 6.30 -2.91 -0.02 -0.30 16 30 H 0.15 -0.90 8.06 -2.91 -0.02 -0.92 16 31 H 0.15 -1.15 6.68 -2.91 -0.02 -1.17 16 32 H 0.10 -0.80 5.81 -2.39 -0.01 -0.81 16 33 H 0.12 -1.24 6.33 -2.39 -0.02 -1.25 16 34 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.07 -0.11 7.46 -2.39 -0.02 -0.12 16 36 H 0.09 -0.61 5.65 -2.39 -0.01 -0.62 16 37 H 0.12 0.42 6.19 -2.39 -0.01 0.41 16 38 H 0.39 0.17 8.62 -74.05 -0.64 -0.47 16 39 H -0.29 -2.48 7.11 99.48 0.71 -1.77 16 40 H -0.28 -2.10 7.11 99.48 0.71 -1.39 16 41 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.08 0.04 6.99 -2.38 -0.02 0.02 16 44 H 0.11 -0.62 7.71 -2.39 -0.02 -0.64 16 45 H 0.06 0.04 6.98 -2.39 -0.02 0.02 16 46 H 0.12 0.58 8.05 -2.91 -0.02 0.55 16 Total: 0.00 -16.04 380.41 1.08 -14.96 By element: Atomic # 1 Polarization: -11.11 SS G_CDS: 0.41 Total: -10.70 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.43 Total: 6.93 kcal Atomic # 7 Polarization: -2.88 SS G_CDS: -3.95 Total: -6.83 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -2.89 Total: -8.20 kcal Atomic # 14 Polarization: 2.41 SS G_CDS: 2.26 Total: 4.66 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.18 Total: -0.81 kcal Total: -16.04 1.08 -14.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860588_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.922 kcal (2) G-P(sol) polarization free energy of solvation -16.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds