Wall clock time and date at job start Mon Mar 8 2021 03:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 117.00036 * 2 1 4 4 C 1.38714 * 120.05551 * 359.97361 * 3 2 1 5 5 C 1.38158 * 119.94076 * 180.02562 * 4 3 2 6 6 C 1.38244 * 120.05911 * 359.74816 * 5 4 3 7 7 C 1.38288 * 120.11276 * 0.51404 * 6 5 4 8 8 C 1.50697 * 119.97540 * 179.76765 * 7 6 5 9 9 H 1.09004 * 112.84782 * 168.52316 * 8 7 6 10 10 C 1.53778 * 113.61318 * 299.71880 * 8 7 6 11 11 C 1.53778 * 87.08415 * 139.98254 * 10 8 7 12 12 H 1.09000 * 113.61723 * 219.93739 * 11 10 8 13 13 N 1.46897 * 113.61506 * 89.11117 * 11 10 8 14 14 C 1.46897 * 111.00099 * 193.83015 * 13 11 10 15 15 C 1.39151 * 110.99610 * 69.87989 * 13 11 10 16 16 N 1.32333 * 119.71910 * 359.97438 * 15 13 11 17 17 C 1.32014 * 121.64916 * 179.70644 * 16 15 13 18 18 C 1.37986 * 120.89293 * 0.57877 * 17 16 15 19 19 C 1.50703 * 120.32115 * 179.73043 * 18 17 16 20 20 O 1.42901 * 109.47041 * 244.72318 * 19 18 17 21 21 Si 1.86302 * 109.47088 * 4.72137 * 19 18 17 22 22 C 1.38898 * 119.35101 * 359.45267 * 18 17 16 23 23 C 1.38445 * 118.48452 * 0.25668 * 22 18 17 24 24 F 1.35100 * 120.46973 * 179.97438 * 23 22 18 25 25 C 1.53785 * 113.61386 * 37.21502 * 8 7 6 26 26 C 1.38124 * 120.04893 * 359.48253 * 7 6 5 27 27 H 1.08992 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47075 * 300.00149 * 1 2 3 29 29 H 1.09000 * 109.46990 * 59.99769 * 1 2 3 30 30 H 1.08002 * 120.02753 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.97088 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.94578 * 180.24988 * 6 5 4 33 33 H 1.09003 * 113.61560 * 25.43246 * 10 8 7 34 34 H 1.09006 * 113.61349 * 254.53131 * 10 8 7 35 35 H 1.09001 * 109.47314 * 289.67577 * 14 13 11 36 36 H 1.09000 * 109.47279 * 49.67908 * 14 13 11 37 37 H 1.09004 * 109.47125 * 169.67363 * 14 13 11 38 38 H 1.07999 * 119.55105 * 180.30791 * 17 16 15 39 39 H 1.08997 * 109.46688 * 124.72193 * 19 18 17 40 40 H 0.96699 * 113.99697 * 180.02562 * 20 19 18 41 41 H 1.48502 * 109.99895 * 178.67925 * 21 19 18 42 42 H 1.48492 * 110.00138 * 300.00078 * 21 19 18 43 43 H 1.08000 * 120.75800 * 180.22768 * 22 18 17 44 44 H 1.09007 * 113.60972 * 105.47194 * 25 8 7 45 45 H 1.08993 * 113.61727 * 334.56685 * 25 8 7 46 46 H 1.08003 * 120.02474 * 180.23422 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3750 -0.0006 5 6 1.9213 3.6047 -0.0011 6 6 3.3019 3.6757 0.0042 7 6 4.0563 2.5167 -0.0007 8 6 5.5611 2.5978 -0.0002 9 1 6.0366 1.6367 0.1955 10 6 6.1387 3.3336 -1.2207 11 6 7.1518 3.9735 -0.2569 12 1 7.3487 5.0251 -0.4653 13 7 8.3801 3.1860 -0.0864 14 6 9.1535 3.6605 1.0689 15 6 9.1507 3.2070 -1.2449 16 7 8.7286 3.8830 -2.3014 17 6 9.4316 3.9333 -3.4176 18 6 10.6354 3.2679 -3.5274 19 6 11.4244 3.3292 -4.8099 20 8 11.4953 2.0244 -5.3884 21 14 10.5856 4.4914 -6.0001 22 6 11.1156 2.5459 -2.4424 23 6 10.3599 2.5157 -1.2828 24 9 10.7886 1.8254 -0.2034 25 6 6.1158 3.7478 0.8570 26 6 3.4315 1.2849 -0.0001 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2130 2.3200 -0.0006 31 1 1.3345 4.5114 -0.0011 32 1 3.7923 4.6380 0.0078 33 1 5.4478 4.0494 -1.6663 34 1 6.5943 2.6698 -1.9555 35 1 9.5807 4.6377 0.8436 36 1 8.4983 3.7415 1.9362 37 1 9.9554 2.9542 1.2841 38 1 9.0573 4.4994 -4.2578 39 1 12.4317 3.6888 -4.5999 40 1 11.9902 1.9886 -6.2184 41 1 11.3710 4.5852 -7.2570 42 1 9.2113 4.0123 -6.2945 43 1 12.0568 2.0196 -2.5021 44 1 6.5529 3.4181 1.7996 45 1 5.4187 4.5767 0.9794 46 1 4.0211 0.3799 -0.0001 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10860588_17656566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:38:28 Heat of formation + Delta-G solvation = 11.870640 kcal Electronic energy + Delta-G solvation = -29907.832302 eV Core-core repulsion = 25681.058694 eV Total energy + Delta-G solvation = -4226.773608 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.153 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.08305 -42.05700 -41.22928 -40.27668 -38.52389 -37.81233 -36.27040 -33.58570 -32.30924 -31.77202 -30.94276 -28.26491 -28.22990 -26.67790 -26.30197 -25.26064 -24.65030 -23.57142 -22.84952 -21.96480 -20.14050 -18.96350 -18.82283 -18.58211 -18.19552 -18.01786 -17.29433 -17.18558 -16.87095 -16.68730 -16.57788 -16.16525 -16.01600 -15.78800 -15.34726 -15.14386 -14.89680 -14.46394 -14.43508 -14.28978 -14.21040 -14.02180 -13.90709 -13.86005 -13.38332 -13.21827 -12.90905 -12.72314 -12.64220 -12.56990 -12.23484 -12.08634 -11.93514 -11.72281 -11.55794 -11.31066 -11.00673 -10.81558 -10.60525 -10.47754 -9.74222 -9.16874 -9.15888 -4.93350 -0.29015 -0.06611 0.33182 0.47534 1.25100 1.59948 1.95034 2.16668 2.34058 2.37231 2.74560 3.00020 3.12127 3.29357 3.51767 3.58044 3.64911 3.74791 3.77854 3.87965 3.95453 4.04200 4.13457 4.18097 4.24151 4.27541 4.29084 4.33205 4.36038 4.39864 4.44408 4.54067 4.62134 4.67320 4.69389 4.72376 4.78666 4.82709 4.88850 4.96482 5.02960 5.07792 5.15437 5.22488 5.24694 5.34296 5.49907 5.63474 5.72879 5.84207 5.93415 6.43070 6.56520 6.67302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.110 3.890 4 C -0.221 4.221 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.032 4.032 8 C -0.069 4.069 9 H 0.086 0.914 10 C -0.099 4.099 11 C 0.071 3.929 12 H 0.077 0.923 13 N -0.471 5.471 14 C 0.017 3.983 15 C 0.288 3.712 16 N -0.493 5.493 17 C 0.119 3.881 18 C -0.131 4.131 19 C -0.076 4.076 20 O -0.559 6.559 21 Si 0.763 3.237 22 C -0.062 4.062 23 C 0.016 3.984 24 F -0.130 7.130 25 C -0.113 4.113 26 C -0.174 4.174 27 H 0.114 0.886 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.181 0.819 39 H 0.106 0.894 40 H 0.399 0.601 41 H -0.280 1.280 42 H -0.294 1.294 43 H 0.162 0.838 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 6.270 -0.433 6.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.257 6.257 3 C 0.065 3.935 4 C -0.240 4.240 5 C -0.098 4.098 6 C -0.174 4.174 7 C -0.033 4.033 8 C -0.087 4.087 9 H 0.104 0.896 10 C -0.136 4.136 11 C -0.036 4.036 12 H 0.095 0.905 13 N -0.188 5.188 14 C -0.129 4.129 15 C 0.054 3.946 16 N -0.206 5.206 17 C -0.038 4.038 18 C -0.134 4.134 19 C -0.185 4.185 20 O -0.369 6.369 21 Si 0.667 3.333 22 C -0.088 4.088 23 C -0.008 4.008 24 F -0.108 7.108 25 C -0.150 4.150 26 C -0.192 4.192 27 H 0.132 0.868 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.197 0.803 39 H 0.124 0.876 40 H 0.250 0.750 41 H -0.207 1.207 42 H -0.222 1.222 43 H 0.179 0.821 44 H 0.099 0.901 45 H 0.130 0.870 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.664 5.952 -0.401 6.002 hybrid contribution 1.344 -1.434 -0.649 2.070 sum 0.680 4.518 -1.050 4.688 Atomic orbital electron populations 1.23298 0.76563 1.05352 1.02207 1.86042 1.23398 1.27432 1.88829 1.19265 0.92569 0.84824 0.96859 1.21488 1.00927 0.92295 1.09287 1.21281 0.94904 0.97574 0.96051 1.21172 0.93766 0.98552 1.03939 1.19683 0.95489 0.92007 0.96081 1.21487 0.89484 0.99380 0.98354 0.89604 1.22874 0.96647 0.98936 0.95181 1.22533 0.87164 0.95612 0.98250 0.90519 1.59024 1.05896 1.52139 1.01734 1.22702 0.98890 0.99722 0.91545 1.20100 0.89104 0.92909 0.92477 1.67799 1.33932 1.18428 1.00416 1.22796 0.89820 0.96036 0.95134 1.20225 0.96935 1.00645 0.95632 1.24844 1.04990 0.91557 0.97074 1.86549 1.78863 1.27997 1.43532 0.94212 0.76208 0.85096 0.77773 1.21577 1.00568 0.96679 0.90002 1.18248 0.95952 1.00307 0.86328 1.91462 1.89546 1.77189 1.52644 1.23209 0.96693 0.98223 0.96910 1.20471 0.91681 0.98759 1.08313 0.86779 0.91674 0.91786 0.84013 0.83342 0.83671 0.88367 0.93131 0.93480 0.87935 0.89866 0.80288 0.87606 0.75016 1.20673 1.22158 0.82083 0.90106 0.87033 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.11 16 2 O -0.34 -2.89 10.50 -92.46 -0.97 -3.87 16 3 C 0.11 0.91 6.69 22.51 0.15 1.06 16 4 C -0.22 -0.90 9.04 22.36 0.20 -0.70 16 5 C -0.08 -0.13 10.04 22.25 0.22 0.09 16 6 C -0.16 -0.28 8.62 22.28 0.19 -0.09 16 7 C -0.03 -0.16 5.29 -19.88 -0.11 -0.26 16 8 C -0.07 -0.22 3.89 -11.01 -0.04 -0.26 16 9 H 0.09 0.54 8.09 -2.38 -0.02 0.52 16 10 C -0.10 -0.32 6.53 31.12 0.20 -0.12 16 11 C 0.07 0.09 2.57 45.44 0.12 0.20 16 12 H 0.08 0.06 8.07 -2.39 -0.02 0.04 16 13 N -0.47 -1.77 4.58 -699.39 -3.20 -4.97 16 14 C 0.02 0.00 9.10 127.69 1.16 1.16 16 15 C 0.29 1.66 6.00 133.08 0.80 2.46 16 16 N -0.49 -2.44 7.79 -193.03 -1.50 -3.94 16 17 C 0.12 0.21 9.84 84.61 0.83 1.05 16 18 C -0.13 -0.14 5.39 -19.77 -0.11 -0.25 16 19 C -0.08 0.25 2.81 71.24 0.20 0.45 16 20 O -0.56 -0.02 12.82 -148.98 -1.91 -1.93 16 21 Si 0.76 -3.48 29.87 68.60 2.05 -1.43 16 22 C -0.06 -0.18 9.82 22.48 0.22 0.05 16 23 C 0.02 0.09 7.01 22.58 0.16 0.25 16 24 F -0.13 -0.92 14.87 44.97 0.67 -0.25 16 25 C -0.11 0.13 6.93 31.12 0.22 0.35 16 26 C -0.17 -1.50 9.65 22.37 0.22 -1.28 16 27 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.06 -0.14 7.66 -2.38 -0.02 -0.16 16 29 H 0.06 -0.13 7.66 -2.39 -0.02 -0.15 16 30 H 0.14 -0.02 6.30 -2.91 -0.02 -0.04 16 31 H 0.15 -0.54 8.06 -2.91 -0.02 -0.57 16 32 H 0.15 -0.43 6.64 -2.91 -0.02 -0.45 16 33 H 0.10 0.15 7.73 -2.39 -0.02 0.13 16 34 H 0.05 0.41 7.26 -2.38 -0.02 0.39 16 35 H 0.05 -0.04 8.10 -2.39 -0.02 -0.06 16 36 H 0.10 -0.34 6.58 -2.39 -0.02 -0.36 16 37 H 0.08 0.11 5.96 -2.38 -0.01 0.09 16 38 H 0.18 -0.48 4.87 -2.91 -0.01 -0.49 16 39 H 0.11 -0.85 7.96 -2.39 -0.02 -0.87 16 40 H 0.40 -3.24 8.74 -74.06 -0.65 -3.89 16 41 H -0.28 0.14 7.11 99.48 0.71 0.85 16 42 H -0.29 -0.83 7.06 99.48 0.70 -0.13 16 43 H 0.16 -0.02 8.06 -2.91 -0.02 -0.04 16 44 H 0.08 -0.13 6.84 -2.38 -0.02 -0.14 16 45 H 0.11 -0.47 6.29 -2.39 -0.02 -0.49 16 46 H 0.12 1.08 8.05 -2.91 -0.02 1.06 16 Total: 0.00 -17.57 370.67 1.29 -16.28 By element: Atomic # 1 Polarization: -5.57 SS G_CDS: 0.41 Total: -5.17 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.75 Total: 5.26 kcal Atomic # 7 Polarization: -4.21 SS G_CDS: -4.71 Total: -8.91 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -2.88 Total: -5.79 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.67 Total: -0.25 kcal Atomic # 14 Polarization: -3.48 SS G_CDS: 2.05 Total: -1.43 kcal Total: -17.57 1.29 -16.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10860588_17656566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.152 kcal (2) G-P(sol) polarization free energy of solvation -17.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds