Wall clock time and date at job start Mon Mar 8 2021 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47126 * 2 1 4 4 O 1.42905 * 109.47305 * 119.99810 * 2 1 3 5 5 C 1.42901 * 113.99905 * 90.00296 * 4 2 1 6 6 H 1.09001 * 112.84932 * 341.19403 * 5 4 2 7 7 C 1.53779 * 113.61593 * 112.50233 * 5 4 2 8 8 C 1.53784 * 87.08045 * 139.98101 * 7 5 4 9 9 H 1.08994 * 113.61477 * 89.11454 * 8 7 5 10 10 N 1.46496 * 113.61320 * 220.02163 * 8 7 5 11 11 C 1.39007 * 119.99949 * 252.49916 * 10 8 7 12 12 N 1.32393 * 119.70743 * 180.02562 * 11 10 8 13 13 C 1.31971 * 121.62494 * 179.97438 * 12 11 10 14 14 C 1.38027 * 120.85447 * 359.97174 * 13 12 11 15 15 C 1.50694 * 120.33212 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.47159 * 244.99400 * 15 14 13 17 17 Si 1.86301 * 109.47515 * 4.99812 * 15 14 13 18 18 C 1.38881 * 119.32975 * 0.02562 * 14 13 12 19 19 C 1.38301 * 118.50627 * 359.72985 * 18 14 13 20 20 C 1.53779 * 113.61102 * 210.00216 * 5 4 2 21 21 H 1.08998 * 109.47113 * 60.00284 * 1 2 3 22 22 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46782 * 299.99880 * 1 2 3 24 24 H 1.08996 * 109.47487 * 239.99878 * 2 1 3 25 25 H 1.09005 * 109.47252 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46893 * 299.99851 * 3 2 1 27 27 H 1.09002 * 109.47187 * 60.00002 * 3 2 1 28 28 H 1.09002 * 113.61557 * 25.43213 * 7 5 4 29 29 H 1.09004 * 113.61501 * 254.52634 * 7 5 4 30 30 H 0.97002 * 120.00490 * 72.49429 * 10 8 7 31 31 H 1.08001 * 119.57285 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47022 * 124.99982 * 15 14 13 33 33 H 0.96695 * 113.99974 * 180.02562 * 16 15 14 34 34 H 1.48496 * 110.00080 * 300.00243 * 17 15 14 35 35 H 1.48502 * 109.99910 * 61.32130 * 17 15 14 36 36 H 1.07995 * 120.74755 * 180.02562 * 18 14 13 37 37 H 1.08003 * 120.45362 * 180.28314 * 19 18 14 38 38 H 1.08997 * 113.61646 * 105.47095 * 20 5 4 39 39 H 1.09000 * 113.61527 * 334.56366 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 -2.0782 0.9887 6 1 1.6628 -2.4736 0.1267 7 6 3.6752 -2.5089 1.0480 8 6 3.2024 -3.7392 1.8403 9 1 2.9402 -4.5895 1.2109 10 7 4.0913 -4.1015 2.9471 11 6 4.8931 -5.2331 2.8527 12 7 5.6938 -5.5554 3.8565 13 6 6.4705 -6.6212 3.8074 14 6 6.4745 -7.4438 2.6990 15 6 7.3657 -8.6582 2.6558 16 8 8.3435 -8.4950 1.6265 17 14 8.2209 -8.8598 4.2985 18 6 5.6489 -7.1409 1.6241 19 6 4.8423 -6.0204 1.7066 20 6 1.9911 -2.8967 2.2736 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 4.3047 -1.8326 1.6263 29 1 4.0983 -2.7533 0.0736 30 1 4.1203 -3.5518 3.7457 31 1 7.1113 -6.8529 4.6454 32 1 6.7640 -9.5431 2.4483 33 1 8.9527 -9.2410 1.5410 34 1 9.0445 -7.6598 4.5931 35 1 7.2159 -9.0623 5.3729 36 1 5.6334 -7.7688 0.7457 37 1 4.1848 -5.7580 0.8909 38 1 1.0545 -3.4541 2.2887 39 1 2.1601 -2.3263 3.1870 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10905400_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:20 Heat of formation + Delta-G solvation = -6.929196 kcal Electronic energy + Delta-G solvation = -19685.948838 eV Core-core repulsion = 16596.256165 eV Total energy + Delta-G solvation = -3089.692674 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51702 -40.57752 -38.40047 -37.66059 -35.28409 -33.47156 -32.98880 -31.19885 -28.23304 -26.88555 -26.69084 -25.05246 -24.47090 -22.46773 -22.18805 -20.94018 -18.94767 -18.47116 -18.20838 -17.68612 -16.79514 -16.43596 -16.18480 -15.97471 -15.43590 -15.29611 -15.14344 -14.79143 -14.41431 -14.14749 -13.83906 -13.76291 -13.61197 -13.58670 -13.34607 -13.18594 -12.76367 -12.42849 -12.25290 -12.07786 -11.99277 -11.89311 -11.65085 -11.07594 -10.71354 -10.54998 -10.46271 -10.17295 -8.68533 -4.96863 0.24038 0.44613 1.31254 1.66660 1.98679 2.00871 2.73254 2.81327 3.33660 3.42315 3.49177 3.52441 3.70259 3.71794 3.85031 3.90940 3.98943 4.03347 4.11605 4.16791 4.19577 4.32925 4.43967 4.55325 4.62538 4.65362 4.71435 4.73416 4.79073 4.83151 4.87348 4.89488 5.01055 5.06213 5.20186 5.23244 5.32207 5.52116 6.00709 6.28686 6.53556 6.65733 7.16230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.365 6.365 5 C 0.067 3.933 6 H 0.092 0.908 7 C -0.172 4.172 8 C 0.131 3.869 9 H 0.113 0.887 10 N -0.708 5.708 11 C 0.408 3.592 12 N -0.539 5.539 13 C 0.152 3.848 14 C -0.191 4.191 15 C -0.055 4.055 16 O -0.548 6.548 17 Si 0.677 3.323 18 C -0.002 4.002 19 C -0.238 4.238 20 C -0.143 4.143 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.408 0.592 31 H 0.146 0.854 32 H 0.072 0.928 33 H 0.381 0.619 34 H -0.249 1.249 35 H -0.253 1.253 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -2.905 -3.186 4.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.022 3.978 3 C -0.209 4.209 4 O -0.284 6.284 5 C 0.008 3.992 6 H 0.109 0.891 7 C -0.211 4.211 8 C 0.025 3.975 9 H 0.131 0.869 10 N -0.340 5.340 11 C 0.173 3.827 12 N -0.256 5.256 13 C -0.006 4.006 14 C -0.196 4.196 15 C -0.167 4.167 16 O -0.354 6.354 17 Si 0.578 3.422 18 C -0.028 4.028 19 C -0.263 4.263 20 C -0.181 4.181 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.244 0.756 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.229 0.771 34 H -0.174 1.174 35 H -0.178 1.178 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.100 0.900 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.379 -1.346 -1.690 2.563 hybrid contribution -0.509 -0.195 -0.970 1.113 sum -1.888 -1.541 -2.660 3.608 Atomic orbital electron populations 1.22335 0.95811 1.02378 1.02854 1.22176 0.93700 0.93998 0.87950 1.21876 1.01870 0.94385 1.02738 1.88004 1.85796 1.19032 1.35565 1.23409 0.95811 0.81934 0.98050 0.89062 1.24125 0.97732 0.97802 1.01465 1.22241 0.90190 0.96188 0.88870 0.86935 1.44442 1.42942 1.26118 1.20459 1.18421 0.88177 0.86820 0.89314 1.67127 1.09883 1.19390 1.29205 1.22039 0.93920 0.88532 0.96074 1.20016 1.02663 0.99748 0.97149 1.24426 0.92973 0.96736 1.02574 1.86501 1.46053 1.46968 1.55887 0.95348 0.84264 0.87203 0.75340 1.21178 0.90574 0.94262 0.96806 1.21477 1.06215 0.98867 0.99707 1.23623 0.98209 0.97044 0.99215 0.91507 0.92509 0.91665 0.92109 0.91952 0.91109 0.91693 0.88550 0.90654 0.75581 0.83697 0.91015 0.77140 1.17369 1.17805 0.84458 0.84686 0.89961 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.13 9.53 37.16 0.35 0.49 16 2 C 0.08 -0.01 3.22 -26.73 -0.09 -0.10 16 3 C -0.15 0.06 9.56 37.16 0.36 0.42 16 4 O -0.37 -0.51 10.00 -35.23 -0.35 -0.86 16 5 C 0.07 -0.05 4.13 -25.92 -0.11 -0.16 16 6 H 0.09 -0.20 7.77 -51.93 -0.40 -0.60 16 7 C -0.17 0.09 7.71 -25.92 -0.20 -0.11 16 8 C 0.13 -0.12 4.03 -67.12 -0.27 -0.39 16 9 H 0.11 -0.23 6.09 -51.93 -0.32 -0.55 16 10 N -0.71 -0.90 5.53 -53.14 -0.29 -1.19 16 11 C 0.41 1.42 7.65 -155.02 -1.19 0.24 16 12 N -0.54 -2.88 10.39 -12.44 -0.13 -3.01 16 13 C 0.15 0.68 9.84 -17.57 -0.17 0.51 16 14 C -0.19 -0.59 5.39 -104.46 -0.56 -1.15 16 15 C -0.06 -0.02 2.81 36.00 0.10 0.09 16 16 O -0.55 -0.25 12.82 -35.23 -0.45 -0.70 16 17 Si 0.68 -0.43 29.88 -169.99 -5.08 -5.51 16 18 C 0.00 -0.01 9.84 -39.32 -0.39 -0.39 16 19 C -0.24 -0.48 9.29 -39.22 -0.36 -0.85 16 20 C -0.14 0.16 7.66 -25.92 -0.20 -0.04 16 21 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 22 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 23 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 24 H 0.06 -0.06 7.72 -51.93 -0.40 -0.46 16 25 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 26 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 27 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 30 H 0.41 0.44 8.85 -40.82 -0.36 0.08 16 31 H 0.15 0.53 4.87 -52.49 -0.26 0.27 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 33 H 0.38 -1.77 8.74 45.56 0.40 -1.37 16 34 H -0.25 -0.65 7.05 56.52 0.40 -0.25 16 35 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 36 H 0.14 0.03 8.06 -52.49 -0.42 -0.39 16 37 H 0.14 -0.06 6.03 -52.48 -0.32 -0.37 16 38 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 39 H 0.10 -0.03 8.12 -51.93 -0.42 -0.45 16 LS Contribution 320.92 15.07 4.84 4.84 Total: 0.00 -6.67 320.92 -10.11 -16.78 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -5.92 Total: -8.90 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.72 Total: -1.45 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: -0.42 Total: -4.20 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -0.80 Total: -1.56 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.08 Total: -5.51 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -6.67 -10.11 -16.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905400_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.853 kcal (2) G-P(sol) polarization free energy of solvation -6.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds