Wall clock time and date at job start Mon Mar 8 2021 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47126 * 2 1 4 4 O 1.42905 * 109.47305 * 119.99810 * 2 1 3 5 5 C 1.42901 * 113.99905 * 90.00296 * 4 2 1 6 6 H 1.09001 * 112.84932 * 341.19403 * 5 4 2 7 7 C 1.53779 * 113.61593 * 112.50233 * 5 4 2 8 8 C 1.53784 * 87.08045 * 139.98101 * 7 5 4 9 9 H 1.08994 * 113.61477 * 89.11454 * 8 7 5 10 10 N 1.46496 * 113.61320 * 220.02163 * 8 7 5 11 11 C 1.39007 * 119.99949 * 252.49916 * 10 8 7 12 12 N 1.32393 * 119.70743 * 180.02562 * 11 10 8 13 13 C 1.31971 * 121.62494 * 179.97438 * 12 11 10 14 14 C 1.38027 * 120.85447 * 359.97174 * 13 12 11 15 15 C 1.50694 * 120.33212 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.47159 * 244.99400 * 15 14 13 17 17 Si 1.86301 * 109.47515 * 4.99812 * 15 14 13 18 18 C 1.38881 * 119.32975 * 0.02562 * 14 13 12 19 19 C 1.38301 * 118.50627 * 359.72985 * 18 14 13 20 20 C 1.53779 * 113.61102 * 210.00216 * 5 4 2 21 21 H 1.08998 * 109.47113 * 60.00284 * 1 2 3 22 22 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46782 * 299.99880 * 1 2 3 24 24 H 1.08996 * 109.47487 * 239.99878 * 2 1 3 25 25 H 1.09005 * 109.47252 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46893 * 299.99851 * 3 2 1 27 27 H 1.09002 * 109.47187 * 60.00002 * 3 2 1 28 28 H 1.09002 * 113.61557 * 25.43213 * 7 5 4 29 29 H 1.09004 * 113.61501 * 254.52634 * 7 5 4 30 30 H 0.97002 * 120.00490 * 72.49429 * 10 8 7 31 31 H 1.08001 * 119.57285 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47022 * 124.99982 * 15 14 13 33 33 H 0.96695 * 113.99974 * 180.02562 * 16 15 14 34 34 H 1.48496 * 110.00080 * 300.00243 * 17 15 14 35 35 H 1.48502 * 109.99910 * 61.32130 * 17 15 14 36 36 H 1.07995 * 120.74755 * 180.02562 * 18 14 13 37 37 H 1.08003 * 120.45362 * 180.28314 * 19 18 14 38 38 H 1.08997 * 113.61646 * 105.47095 * 20 5 4 39 39 H 1.09000 * 113.61527 * 334.56366 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 -2.0782 0.9887 6 1 1.6628 -2.4736 0.1267 7 6 3.6752 -2.5089 1.0480 8 6 3.2024 -3.7392 1.8403 9 1 2.9402 -4.5895 1.2109 10 7 4.0913 -4.1015 2.9471 11 6 4.8931 -5.2331 2.8527 12 7 5.6938 -5.5554 3.8565 13 6 6.4705 -6.6212 3.8074 14 6 6.4745 -7.4438 2.6990 15 6 7.3657 -8.6582 2.6558 16 8 8.3435 -8.4950 1.6265 17 14 8.2209 -8.8598 4.2985 18 6 5.6489 -7.1409 1.6241 19 6 4.8423 -6.0204 1.7066 20 6 1.9911 -2.8967 2.2736 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 4.3047 -1.8326 1.6263 29 1 4.0983 -2.7533 0.0736 30 1 4.1203 -3.5518 3.7457 31 1 7.1113 -6.8529 4.6454 32 1 6.7640 -9.5431 2.4483 33 1 8.9527 -9.2410 1.5410 34 1 9.0445 -7.6598 4.5931 35 1 7.2159 -9.0623 5.3729 36 1 5.6334 -7.7688 0.7457 37 1 4.1848 -5.7580 0.8909 38 1 1.0545 -3.4541 2.2887 39 1 2.1601 -2.3263 3.1870 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10905400_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:20 Heat of formation + Delta-G solvation = -5.081918 kcal Electronic energy + Delta-G solvation = -19685.868734 eV Core-core repulsion = 16596.256165 eV Total energy + Delta-G solvation = -3089.612570 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63785 -40.58456 -38.40311 -37.65295 -35.34157 -33.61097 -33.00899 -31.29133 -28.17292 -26.85062 -26.73553 -25.12252 -24.55206 -22.52996 -22.19152 -20.91192 -19.02960 -18.50504 -18.21307 -17.75748 -16.77494 -16.48897 -16.20311 -15.98473 -15.54474 -15.36449 -15.19648 -14.81733 -14.41709 -14.22099 -13.91276 -13.86566 -13.58429 -13.57486 -13.30791 -13.13998 -12.72573 -12.46588 -12.27972 -12.08977 -11.99583 -11.86626 -11.59918 -11.14444 -10.88904 -10.72093 -10.43464 -10.18813 -8.81067 -4.96369 0.04333 0.28567 1.32562 1.64218 1.93258 1.98753 2.64577 2.78228 3.32618 3.42329 3.48763 3.50624 3.72583 3.76665 3.82864 3.91307 3.98197 4.03942 4.09141 4.24493 4.26214 4.26590 4.45488 4.60818 4.65210 4.69399 4.70098 4.77980 4.85519 4.87675 4.89060 4.93654 4.97243 5.06386 5.20425 5.26010 5.28223 5.42319 5.92352 6.33831 6.40593 6.95101 6.99173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.152 4.152 4 O -0.388 6.388 5 C 0.067 3.933 6 H 0.112 0.888 7 C -0.171 4.171 8 C 0.135 3.865 9 H 0.132 0.868 10 N -0.708 5.708 11 C 0.392 3.608 12 N -0.572 5.572 13 C 0.124 3.876 14 C -0.202 4.202 15 C -0.057 4.057 16 O -0.565 6.565 17 Si 0.768 3.232 18 C -0.008 4.008 19 C -0.235 4.235 20 C -0.140 4.140 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.405 0.595 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.403 0.597 34 H -0.301 1.301 35 H -0.292 1.292 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.094 0.906 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -4.021 -5.041 6.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 C -0.209 4.209 4 O -0.308 6.308 5 C 0.008 3.992 6 H 0.129 0.871 7 C -0.210 4.210 8 C 0.029 3.971 9 H 0.149 0.851 10 N -0.338 5.338 11 C 0.156 3.844 12 N -0.290 5.290 13 C -0.032 4.032 14 C -0.207 4.207 15 C -0.169 4.169 16 O -0.375 6.375 17 Si 0.675 3.325 18 C -0.033 4.033 19 C -0.259 4.259 20 C -0.178 4.178 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.240 0.760 31 H 0.156 0.844 32 H 0.116 0.884 33 H 0.255 0.745 34 H -0.229 1.229 35 H -0.219 1.219 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.112 0.888 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.037 -2.491 -3.570 4.806 hybrid contribution -0.291 0.225 -0.364 0.518 sum -2.329 -2.266 -3.934 5.102 Atomic orbital electron populations 1.22313 0.95338 1.02659 1.02801 1.22301 0.94103 0.93963 0.87938 1.21897 1.01460 0.94630 1.02943 1.87983 1.86002 1.20193 1.36587 1.23549 0.95655 0.81176 0.98804 0.87071 1.24070 0.97795 0.97625 1.01550 1.22401 0.89689 0.96618 0.88379 0.85085 1.44589 1.42854 1.25478 1.20924 1.18729 0.88378 0.87675 0.89637 1.67049 1.11010 1.20251 1.30691 1.22140 0.94680 0.89390 0.96981 1.20368 1.03211 1.00340 0.96827 1.24477 0.93147 0.96376 1.02858 1.86442 1.46633 1.48797 1.55619 0.94535 0.80641 0.84136 0.73179 1.21523 0.90047 0.94549 0.97201 1.21791 1.06142 0.98320 0.99666 1.23587 0.98630 0.96919 0.98674 0.90477 0.92052 0.92778 0.90957 0.92593 0.89744 0.92650 0.90563 0.89836 0.75954 0.84414 0.88404 0.74542 1.22906 1.21905 0.82108 0.82060 0.88765 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.35 9.53 71.98 0.69 1.04 16 2 C 0.07 -0.04 3.22 30.59 0.10 0.06 16 3 C -0.15 0.08 9.56 71.98 0.69 0.77 16 4 O -0.39 -1.19 10.00 -148.98 -1.49 -2.68 16 5 C 0.07 -0.13 4.13 31.12 0.13 0.00 16 6 H 0.11 -0.67 7.77 -2.39 -0.02 -0.69 16 7 C -0.17 0.19 7.71 31.12 0.24 0.43 16 8 C 0.13 -0.30 4.03 45.52 0.18 -0.12 16 9 H 0.13 -0.79 6.09 -2.39 -0.01 -0.80 16 10 N -0.71 -2.31 5.53 -322.04 -1.78 -4.09 16 11 C 0.39 3.01 7.65 133.07 1.02 4.03 16 12 N -0.57 -7.21 10.39 -193.26 -2.01 -9.22 16 13 C 0.12 1.35 9.84 84.62 0.83 2.18 16 14 C -0.20 -1.28 5.39 -19.76 -0.11 -1.39 16 15 C -0.06 0.01 2.81 71.23 0.20 0.21 16 16 O -0.57 0.20 12.82 -148.98 -1.91 -1.71 16 17 Si 0.77 -0.41 29.88 68.60 2.05 1.64 16 18 C -0.01 -0.03 9.84 22.44 0.22 0.19 16 19 C -0.23 -0.77 9.29 22.50 0.21 -0.56 16 20 C -0.14 0.33 7.66 31.12 0.24 0.57 16 21 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 22 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 24 H 0.07 -0.22 7.72 -2.39 -0.02 -0.24 16 25 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 26 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.40 1.56 8.85 -92.71 -0.82 0.74 16 31 H 0.14 1.42 4.87 -2.91 -0.01 1.40 16 32 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 33 H 0.40 -4.46 8.74 -74.06 -0.65 -5.11 16 34 H -0.30 -2.35 7.05 99.48 0.70 -1.65 16 35 H -0.29 -1.60 7.11 99.48 0.71 -0.90 16 36 H 0.16 -0.29 8.06 -2.91 -0.02 -0.32 16 37 H 0.16 -0.48 6.03 -2.91 -0.02 -0.50 16 38 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.09 0.03 8.12 -2.39 -0.02 0.01 16 Total: 0.00 -17.64 320.92 -0.88 -18.52 By element: Atomic # 1 Polarization: -9.48 SS G_CDS: -0.38 Total: -9.86 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 4.64 Total: 7.40 kcal Atomic # 7 Polarization: -9.52 SS G_CDS: -3.79 Total: -13.31 kcal Atomic # 8 Polarization: -0.99 SS G_CDS: -3.40 Total: -4.39 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: 2.05 Total: 1.64 kcal Total: -17.64 -0.88 -18.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905400_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.435 kcal (2) G-P(sol) polarization free energy of solvation -17.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds