Wall clock time and date at job start Mon Mar 8 2021 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 O 1.42903 * 109.46923 * 240.00539 * 2 1 3 5 5 C 1.42901 * 113.99972 * 210.00130 * 4 2 1 6 6 H 1.09003 * 112.85169 * 339.66672 * 5 4 2 7 7 C 1.53788 * 113.61641 * 110.85909 * 5 4 2 8 8 C 1.53950 * 87.01909 * 139.95222 * 7 5 4 9 9 H 1.08997 * 113.61312 * 89.20001 * 8 7 5 10 10 N 1.46501 * 113.66594 * 220.06792 * 8 7 5 11 11 C 1.38607 * 119.99949 * 252.55786 * 10 8 7 12 12 N 1.29688 * 124.94833 * 359.70311 * 11 10 8 13 13 C 1.32125 * 116.85910 * 179.81431 * 12 11 10 14 14 C 1.33323 * 114.58509 * 0.46714 * 13 12 11 15 15 C 1.50693 * 125.95287 * 179.75623 * 14 13 12 16 16 O 1.42899 * 109.47323 * 300.02464 * 15 14 13 17 17 Si 1.86297 * 109.47074 * 180.02562 * 15 14 13 18 18 S 1.70963 * 124.94631 * 180.02562 * 11 10 8 19 19 C 1.53779 * 113.61499 * 208.46698 * 5 4 2 20 20 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 21 21 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 23 23 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 24 24 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08996 * 113.61309 * 254.53713 * 7 5 4 28 28 H 1.09000 * 113.60976 * 25.43501 * 7 5 4 29 29 H 0.97004 * 119.99518 * 72.56361 * 10 8 7 30 30 H 1.08007 * 122.70123 * 180.22732 * 13 12 11 31 31 H 1.09001 * 109.47103 * 60.02448 * 15 14 13 32 32 H 0.96702 * 114.00108 * 300.00316 * 16 15 14 33 33 H 1.48504 * 109.99974 * 179.97438 * 17 15 14 34 34 H 1.48495 * 110.00067 * 301.31933 * 17 15 14 35 35 H 1.08995 * 113.61240 * 334.57045 * 19 5 4 36 36 H 1.09004 * 113.61266 * 105.38608 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 3.2659 -1.3245 -0.9888 6 1 3.8296 -0.9315 -0.1426 7 6 3.1744 -2.8595 -1.0083 8 6 4.4826 -2.8470 -1.8199 9 1 5.3800 -2.8716 -1.2018 10 7 4.5113 -3.8316 -2.9043 11 6 5.3062 -4.9617 -2.7933 12 7 6.0642 -5.2401 -1.7785 13 6 6.7534 -6.3657 -1.8392 14 6 6.5762 -7.0648 -2.9605 15 6 7.2364 -8.3764 -3.2991 16 8 8.6551 -8.2059 -3.3134 17 14 6.6625 -8.9455 -4.9776 18 16 5.4361 -6.1878 -3.9777 19 6 4.0914 -1.4332 -2.2817 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9563 -0.8899 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 3.2748 -3.3154 -0.0234 28 1 2.3182 -3.2387 -1.5661 29 1 3.9741 -3.6926 -3.6999 30 1 7.4105 -6.6911 -1.0462 31 1 6.9677 -9.1222 -2.5510 32 1 8.9666 -7.5550 -3.9572 33 1 7.3070 -10.2379 -5.3235 34 1 5.1852 -9.0960 -4.9852 35 1 3.4863 -1.4218 -3.1882 36 1 4.9302 -0.7385 -2.3239 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10905400_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:24 Heat of formation + Delta-G solvation = -3.117212 kcal Electronic energy + Delta-G solvation = -18290.670257 eV Core-core repulsion = 15290.295130 eV Total energy + Delta-G solvation = -3000.375127 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06350 -40.30389 -38.35172 -37.69393 -35.12936 -33.00725 -31.13393 -28.22323 -26.97590 -26.73354 -25.54654 -23.97684 -22.31067 -21.42601 -20.67318 -19.47665 -18.46427 -17.78872 -17.07656 -16.57914 -16.45199 -16.05271 -15.83117 -15.77031 -15.42312 -14.95673 -14.81489 -14.28168 -13.98277 -13.68236 -13.57642 -13.32925 -13.17578 -12.86408 -12.76043 -12.37627 -12.31001 -12.10325 -11.97854 -11.92239 -11.63214 -11.10504 -10.76251 -10.44276 -10.22200 -10.13224 -8.72276 -5.11943 -0.00959 0.04999 0.71331 1.27799 1.60056 1.92103 2.05120 2.09280 2.72363 3.38331 3.45299 3.46249 3.70515 3.76068 3.79870 3.94454 3.96195 4.06512 4.21254 4.28562 4.49747 4.60776 4.63719 4.65827 4.72323 4.76642 4.81214 4.85356 4.90798 4.91785 4.98872 5.20850 5.23007 5.26099 5.85866 6.05583 6.30737 6.53880 7.02481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.366 6.366 5 C 0.067 3.933 6 H 0.091 0.909 7 C -0.170 4.170 8 C 0.141 3.859 9 H 0.121 0.879 10 N -0.679 5.679 11 C 0.327 3.673 12 N -0.552 5.552 13 C 0.120 3.880 14 C -0.308 4.308 15 C -0.010 4.010 16 O -0.537 6.537 17 Si 0.655 3.345 18 S 0.087 5.913 19 C -0.144 4.144 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.416 0.584 30 H 0.176 0.824 31 H 0.121 0.879 32 H 0.380 0.620 33 H -0.236 1.236 34 H -0.241 1.241 35 H 0.096 0.904 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 2.959 -1.358 3.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.285 6.285 5 C 0.008 3.992 6 H 0.109 0.891 7 C -0.210 4.210 8 C 0.034 3.966 9 H 0.138 0.862 10 N -0.318 5.318 11 C -0.043 4.043 12 N -0.277 5.277 13 C -0.031 4.031 14 C -0.431 4.431 15 C -0.124 4.124 16 O -0.342 6.342 17 Si 0.555 3.445 18 S 0.336 5.664 19 C -0.182 4.182 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.253 0.747 30 H 0.193 0.807 31 H 0.138 0.862 32 H 0.227 0.773 33 H -0.159 1.159 34 H -0.165 1.165 35 H 0.115 0.885 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.673 2.187 -1.936 3.366 hybrid contribution 0.326 -0.082 1.267 1.311 sum -1.347 2.104 -0.669 2.587 Atomic orbital electron populations 1.21873 0.93452 1.02789 1.02718 1.22167 0.95180 0.92464 0.88005 1.22332 1.01498 0.96723 1.02821 1.87986 1.35589 1.69340 1.35577 1.23395 0.85605 0.92094 0.98065 0.89076 1.24115 0.98745 0.96563 1.01593 1.22298 0.98959 0.86548 0.88810 0.86162 1.44016 1.46849 1.18873 1.22015 1.23770 0.94152 0.92744 0.93676 1.66476 1.14027 1.20851 1.26343 1.21321 0.96699 0.88328 0.96775 1.25570 1.11109 1.06322 1.00068 1.24105 0.83711 0.93880 1.10731 1.86510 1.18672 1.64758 1.64308 0.94968 0.81691 0.86925 0.80867 1.83989 1.44735 1.15868 1.21768 1.23638 0.99751 0.95921 0.98922 0.91710 0.91983 0.91132 0.92101 0.91675 0.91535 0.92478 0.90630 0.88844 0.74667 0.80721 0.86166 0.77266 1.15915 1.16520 0.88511 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.09 9.56 37.16 0.36 0.44 16 2 C 0.08 -0.02 3.22 -26.73 -0.09 -0.10 16 3 C -0.18 0.14 9.53 37.16 0.35 0.50 16 4 O -0.37 -0.41 10.00 -35.23 -0.35 -0.76 16 5 C 0.07 -0.04 4.11 -25.92 -0.11 -0.15 16 6 H 0.09 -0.15 7.80 -51.93 -0.40 -0.55 16 7 C -0.17 0.07 7.73 -25.83 -0.20 -0.13 16 8 C 0.14 -0.10 4.36 -67.03 -0.29 -0.39 16 9 H 0.12 0.04 7.66 -51.93 -0.40 -0.35 16 10 N -0.68 0.35 5.51 -54.91 -0.30 0.04 16 11 C 0.33 0.47 8.09 -87.68 -0.71 -0.24 16 12 N -0.55 -1.68 9.83 -15.21 -0.15 -1.83 16 13 C 0.12 0.25 11.22 -19.14 -0.21 0.03 16 14 C -0.31 -0.29 5.74 -36.03 -0.21 -0.49 16 15 C -0.01 0.00 2.99 36.00 0.11 0.11 16 16 O -0.54 -0.18 12.87 -35.23 -0.45 -0.63 16 17 Si 0.66 -0.32 31.05 -169.99 -5.28 -5.60 16 18 S 0.09 0.02 20.57 -107.50 -2.21 -2.19 16 19 C -0.14 0.22 7.67 -25.92 -0.20 0.02 16 20 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 21 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 22 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 23 H 0.06 -0.05 7.74 -51.93 -0.40 -0.46 16 24 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 25 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 27 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.42 -1.02 8.85 -40.82 -0.36 -1.38 16 30 H 0.18 0.17 8.06 -52.48 -0.42 -0.26 16 31 H 0.12 0.02 7.96 -51.93 -0.41 -0.39 16 32 H 0.38 -1.23 8.70 45.56 0.40 -0.84 16 33 H -0.24 -0.50 7.11 56.52 0.40 -0.09 16 34 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16 35 H 0.10 -0.15 8.12 -51.93 -0.42 -0.57 16 36 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 LS Contribution 316.42 15.07 4.77 4.77 Total: 0.00 -5.17 316.42 -10.61 -15.78 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: -5.43 Total: -9.17 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.20 Total: -0.40 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -0.45 Total: -1.78 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: -0.81 Total: -1.40 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: -5.28 Total: -5.60 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.21 Total: -2.19 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -5.17 -10.61 -15.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905400_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.661 kcal (2) G-P(sol) polarization free energy of solvation -5.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds