Wall clock time and date at job start Mon Mar 8 2021 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 O 1.42903 * 109.46923 * 240.00539 * 2 1 3 5 5 C 1.42901 * 113.99972 * 210.00130 * 4 2 1 6 6 H 1.09003 * 112.85169 * 339.66672 * 5 4 2 7 7 C 1.53788 * 113.61641 * 110.85909 * 5 4 2 8 8 C 1.53950 * 87.01909 * 139.95222 * 7 5 4 9 9 H 1.08997 * 113.61312 * 89.20001 * 8 7 5 10 10 N 1.46501 * 113.66594 * 220.06792 * 8 7 5 11 11 C 1.38607 * 119.99949 * 252.55786 * 10 8 7 12 12 N 1.29688 * 124.94833 * 359.70311 * 11 10 8 13 13 C 1.32125 * 116.85910 * 179.81431 * 12 11 10 14 14 C 1.33323 * 114.58509 * 0.46714 * 13 12 11 15 15 C 1.50693 * 125.95287 * 179.75623 * 14 13 12 16 16 O 1.42899 * 109.47323 * 300.02464 * 15 14 13 17 17 Si 1.86297 * 109.47074 * 180.02562 * 15 14 13 18 18 S 1.70963 * 124.94631 * 180.02562 * 11 10 8 19 19 C 1.53779 * 113.61499 * 208.46698 * 5 4 2 20 20 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 21 21 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 23 23 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 24 24 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08996 * 113.61309 * 254.53713 * 7 5 4 28 28 H 1.09000 * 113.60976 * 25.43501 * 7 5 4 29 29 H 0.97004 * 119.99518 * 72.56361 * 10 8 7 30 30 H 1.08007 * 122.70123 * 180.22732 * 13 12 11 31 31 H 1.09001 * 109.47103 * 60.02448 * 15 14 13 32 32 H 0.96702 * 114.00108 * 300.00316 * 16 15 14 33 33 H 1.48504 * 109.99974 * 179.97438 * 17 15 14 34 34 H 1.48495 * 110.00067 * 301.31933 * 17 15 14 35 35 H 1.08995 * 113.61240 * 334.57045 * 19 5 4 36 36 H 1.09004 * 113.61266 * 105.38608 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 3.2659 -1.3245 -0.9888 6 1 3.8296 -0.9315 -0.1426 7 6 3.1744 -2.8595 -1.0083 8 6 4.4826 -2.8470 -1.8199 9 1 5.3800 -2.8716 -1.2018 10 7 4.5113 -3.8316 -2.9043 11 6 5.3062 -4.9617 -2.7933 12 7 6.0642 -5.2401 -1.7785 13 6 6.7534 -6.3657 -1.8392 14 6 6.5762 -7.0648 -2.9605 15 6 7.2364 -8.3764 -3.2991 16 8 8.6551 -8.2059 -3.3134 17 14 6.6625 -8.9455 -4.9776 18 16 5.4361 -6.1878 -3.9777 19 6 4.0914 -1.4332 -2.2817 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9563 -0.8899 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 3.2748 -3.3154 -0.0234 28 1 2.3182 -3.2387 -1.5661 29 1 3.9741 -3.6926 -3.6999 30 1 7.4105 -6.6911 -1.0462 31 1 6.9677 -9.1222 -2.5510 32 1 8.9666 -7.5550 -3.9572 33 1 7.3070 -10.2379 -5.3235 34 1 5.1852 -9.0960 -4.9852 35 1 3.4863 -1.4218 -3.1882 36 1 4.9302 -0.7385 -2.3239 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10905400_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:23 Heat of formation + Delta-G solvation = 0.600761 kcal Electronic energy + Delta-G solvation = -18290.509034 eV Core-core repulsion = 15290.295130 eV Total energy + Delta-G solvation = -3000.213904 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07417 -40.33356 -38.34039 -37.69907 -35.12199 -32.98346 -31.18366 -28.15799 -26.98992 -26.69879 -25.56539 -23.99989 -22.26955 -21.41085 -20.70671 -19.49004 -18.46631 -17.79529 -17.07164 -16.58096 -16.45983 -16.03871 -15.85893 -15.76489 -15.45066 -14.97653 -14.84140 -14.26081 -14.05839 -13.62447 -13.52288 -13.28828 -13.11458 -12.89784 -12.71050 -12.46977 -12.30260 -12.08997 -11.95378 -11.88395 -11.58810 -11.11330 -10.81658 -10.42002 -10.28392 -10.17977 -8.74996 -5.11190 -0.07587 0.00477 0.65619 1.26552 1.57606 1.87897 1.95730 2.11981 2.77487 3.44280 3.50951 3.52081 3.68727 3.80573 3.86562 3.93210 3.99977 4.11991 4.27472 4.34239 4.48189 4.65777 4.70136 4.71612 4.71983 4.79797 4.87675 4.89754 4.96023 4.97038 4.98973 5.22704 5.27955 5.29931 5.84189 6.12498 6.35166 6.72651 6.98635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 C -0.174 4.174 4 O -0.383 6.383 5 C 0.065 3.935 6 H 0.101 0.899 7 C -0.168 4.168 8 C 0.144 3.856 9 H 0.111 0.889 10 N -0.673 5.673 11 C 0.315 3.685 12 N -0.578 5.578 13 C 0.104 3.896 14 C -0.309 4.309 15 C -0.013 4.013 16 O -0.550 6.550 17 Si 0.730 3.270 18 S 0.114 5.886 19 C -0.134 4.134 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.425 0.575 30 H 0.179 0.821 31 H 0.118 0.882 32 H 0.395 0.605 33 H -0.271 1.271 34 H -0.269 1.269 35 H 0.099 0.901 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 3.444 -1.715 3.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 C -0.231 4.231 4 O -0.303 6.303 5 C 0.007 3.993 6 H 0.118 0.882 7 C -0.208 4.208 8 C 0.037 3.963 9 H 0.129 0.871 10 N -0.312 5.312 11 C -0.055 4.055 12 N -0.304 5.304 13 C -0.046 4.046 14 C -0.432 4.432 15 C -0.127 4.127 16 O -0.358 6.358 17 Si 0.633 3.367 18 S 0.364 5.636 19 C -0.172 4.172 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.264 0.736 30 H 0.195 0.805 31 H 0.136 0.864 32 H 0.245 0.755 33 H -0.197 1.197 34 H -0.195 1.195 35 H 0.117 0.883 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.612 2.703 -2.302 3.899 hybrid contribution 0.295 -0.264 1.383 1.439 sum -1.317 2.439 -0.919 2.920 Atomic orbital electron populations 1.21884 0.93365 1.02527 1.03015 1.22285 0.95356 0.92809 0.87894 1.22309 1.01599 0.96297 1.02900 1.87963 1.36329 1.69612 1.36361 1.23491 0.85309 0.91623 0.98887 0.88161 1.24066 0.98605 0.96939 1.01192 1.22212 0.98309 0.87045 0.88770 0.87149 1.44065 1.46451 1.18327 1.22370 1.23978 0.94212 0.93427 0.93899 1.66472 1.14944 1.21592 1.27412 1.21441 0.97213 0.88556 0.97437 1.25703 1.11028 1.06442 1.00002 1.24213 0.83784 0.93476 1.11180 1.86476 1.18594 1.65492 1.65204 0.94096 0.78621 0.84760 0.79184 1.83838 1.44106 1.14927 1.20749 1.23572 0.99770 0.95281 0.98598 0.92330 0.92506 0.89919 0.91509 0.92416 0.90605 0.92290 0.91268 0.89513 0.73589 0.80453 0.86444 0.75484 1.19691 1.19515 0.88259 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.16 9.56 71.98 0.69 0.85 16 2 C 0.07 -0.03 3.22 30.60 0.10 0.07 16 3 C -0.17 0.32 9.53 71.98 0.69 1.01 16 4 O -0.38 -0.91 10.00 -148.98 -1.49 -2.40 16 5 C 0.07 -0.08 4.11 31.12 0.13 0.04 16 6 H 0.10 -0.34 7.80 -2.39 -0.02 -0.35 16 7 C -0.17 0.05 7.73 31.18 0.24 0.29 16 8 C 0.14 -0.16 4.36 45.58 0.20 0.04 16 9 H 0.11 0.15 7.66 -2.39 -0.02 0.13 16 10 N -0.67 0.65 5.51 -327.62 -1.81 -1.15 16 11 C 0.32 0.97 8.09 179.32 1.45 2.42 16 12 N -0.58 -3.86 9.83 -202.02 -1.99 -5.85 16 13 C 0.10 0.49 11.22 83.54 0.94 1.43 16 14 C -0.31 -0.60 5.74 24.57 0.14 -0.45 16 15 C -0.01 0.00 2.99 71.23 0.21 0.21 16 16 O -0.55 -0.23 12.87 -148.98 -1.92 -2.15 16 17 Si 0.73 -0.78 31.05 68.60 2.13 1.35 16 18 S 0.11 0.02 20.57 -56.49 -1.16 -1.15 16 19 C -0.13 0.44 7.67 31.12 0.24 0.68 16 20 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 21 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 22 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 23 H 0.07 -0.13 7.74 -2.39 -0.02 -0.14 16 24 H 0.06 -0.02 8.14 -2.39 -0.02 -0.03 16 25 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.42 -2.19 8.85 -92.71 -0.82 -3.01 16 30 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 31 H 0.12 0.07 7.96 -2.39 -0.02 0.06 16 32 H 0.40 -2.80 8.70 -74.06 -0.64 -3.45 16 33 H -0.27 -1.31 7.11 99.48 0.71 -0.60 16 34 H -0.27 -0.97 7.11 99.48 0.71 -0.26 16 35 H 0.10 -0.36 8.12 -2.39 -0.02 -0.37 16 36 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 Total: 0.00 -11.92 316.42 -1.55 -13.48 By element: Atomic # 1 Polarization: -8.36 SS G_CDS: -0.34 Total: -8.70 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.02 Total: 6.57 kcal Atomic # 7 Polarization: -3.20 SS G_CDS: -3.79 Total: -7.00 kcal Atomic # 8 Polarization: -1.15 SS G_CDS: -3.41 Total: -4.55 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.13 Total: 1.35 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.16 Total: -1.15 kcal Total: -11.92 -1.55 -13.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905400_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.077 kcal (2) G-P(sol) polarization free energy of solvation -11.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds