Wall clock time and date at job start Mon Mar 8 2021 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33329 * 125.95304 * 2 1 4 4 C 1.50694 * 122.71099 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47555 * 44.96025 * 4 3 2 6 6 Si 1.86302 * 109.47247 * 164.95944 * 4 3 2 7 7 N 1.32126 * 114.57962 * 179.97438 * 3 2 1 8 8 C 1.29695 * 116.86397 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94655 * 179.97438 * 8 7 3 10 10 C 1.46505 * 119.99851 * 179.72165 * 9 8 7 11 11 H 1.08999 * 112.84907 * 336.47545 * 10 9 8 12 12 C 1.53784 * 113.60893 * 107.77903 * 10 9 8 13 13 C 1.53782 * 87.07716 * 139.98283 * 12 10 9 14 14 H 1.09004 * 113.61506 * 89.11660 * 13 12 10 15 15 O 1.42897 * 113.69320 * 220.00719 * 13 12 10 16 16 C 1.42896 * 114.00359 * 247.53604 * 15 13 12 17 17 C 1.53009 * 109.47117 * 89.99338 * 16 15 13 18 18 C 1.52998 * 109.47707 * 209.99769 * 16 15 13 19 19 C 1.53776 * 113.61229 * 205.27540 * 10 9 8 20 20 S 1.70964 * 110.10073 * 0.24252 * 8 7 3 21 21 H 1.09001 * 109.46757 * 84.24015 * 1 2 3 22 22 H 1.08994 * 109.47415 * 204.24161 * 1 2 3 23 23 H 1.09000 * 109.47094 * 324.24449 * 1 2 3 24 24 H 1.09001 * 109.47283 * 284.95498 * 4 3 2 25 25 H 0.96699 * 114.00122 * 180.02562 * 5 4 3 26 26 H 1.48495 * 110.00021 * 299.99863 * 6 4 3 27 27 H 1.48503 * 110.00080 * 61.31650 * 6 4 3 28 28 H 0.97002 * 119.99993 * 0.02562 * 9 8 7 29 29 H 1.08993 * 113.61519 * 254.52564 * 12 10 9 30 30 H 1.08999 * 113.61846 * 25.43727 * 12 10 9 31 31 H 1.08998 * 109.47169 * 329.99957 * 16 15 13 32 32 H 1.08998 * 109.46694 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47080 * 300.00663 * 17 16 15 34 34 H 1.08997 * 109.46700 * 60.00811 * 17 16 15 35 35 H 1.09001 * 109.46837 * 59.99497 * 18 16 15 36 36 H 1.09000 * 109.47578 * 180.02562 * 18 16 15 37 37 H 1.09002 * 109.46656 * 299.99919 * 18 16 15 38 38 H 1.08995 * 113.61925 * 334.57295 * 19 10 9 39 39 H 1.09005 * 113.61361 * 105.39365 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.6806 2.5796 0.9529 6 14 3.0957 3.6785 0.4562 7 7 3.5851 0.8187 0.0005 8 6 3.9315 -0.4311 0.0005 9 7 5.2384 -0.8928 0.0005 10 6 5.5065 -2.3331 0.0066 11 1 4.6791 -2.9159 0.4114 12 6 6.0400 -2.8659 -1.3337 13 6 6.9943 -3.7492 -0.5127 14 1 6.5740 -4.7202 -0.2508 15 8 8.3081 -3.8445 -1.0667 16 6 8.6390 -5.1451 -1.5575 17 6 8.2359 -5.2525 -3.0297 18 6 10.1460 -5.3728 -1.4235 19 6 6.8728 -2.7028 0.6077 20 16 2.5412 -1.4261 -0.0071 21 1 -0.3633 0.1031 -1.0225 22 1 -0.3634 -0.9370 0.4219 23 1 -0.3633 0.8340 0.6005 24 1 1.3619 2.7252 -0.9921 25 1 0.2793 3.4578 1.0069 26 1 3.6218 3.3590 1.8076 27 1 4.1911 3.6106 -0.5443 28 1 5.9756 -0.2622 0.0009 29 1 5.3028 -3.4317 -1.9032 30 1 6.5500 -2.1109 -1.9320 31 1 8.1048 -5.8986 -0.9787 32 1 8.4879 -6.2448 -3.4038 33 1 7.1623 -5.0904 -3.1251 34 1 8.7701 -4.4991 -3.6085 35 1 10.4331 -5.2962 -0.3748 36 1 10.3984 -6.3647 -1.7983 37 1 10.6801 -4.6193 -2.0024 38 1 7.6103 -1.9031 0.5402 39 1 6.8079 -3.1356 1.6060 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10905400_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:26 Heat of formation + Delta-G solvation = -5.948388 kcal Electronic energy + Delta-G solvation = -20302.837549 eV Core-core repulsion = 17146.802033 eV Total energy + Delta-G solvation = -3156.035515 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16169 -40.66670 -38.47061 -37.54676 -35.30826 -33.23102 -32.34788 -29.22561 -28.25968 -26.92332 -25.84659 -25.19870 -23.93590 -22.41016 -21.55584 -19.96652 -19.27445 -18.47087 -17.92447 -17.36212 -16.86372 -16.18504 -16.17177 -15.75769 -15.71023 -15.24049 -15.16970 -14.23833 -14.10387 -14.00252 -13.91765 -13.66479 -13.62799 -13.47529 -13.33790 -13.19782 -12.86709 -12.78826 -12.51470 -12.07758 -12.04523 -11.97103 -11.72847 -11.65522 -10.94820 -10.64277 -10.53761 -10.26854 -9.96863 -8.59672 -4.74155 0.05904 0.18911 0.79838 1.47639 1.76499 1.91241 1.98278 2.43331 2.65860 3.18485 3.25331 3.31860 3.57782 3.63127 3.85956 3.95632 4.01947 4.05825 4.16294 4.18744 4.42634 4.43918 4.45586 4.56553 4.60571 4.65596 4.72757 4.76007 4.80419 4.81473 4.85254 4.92543 4.96730 5.17739 5.20121 5.20653 5.39813 5.61768 6.22331 6.27726 6.65441 6.93220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.224 4.224 3 C 0.101 3.899 4 C -0.037 4.037 5 O -0.545 6.545 6 Si 0.712 3.288 7 N -0.549 5.549 8 C 0.320 3.680 9 N -0.681 5.681 10 C 0.128 3.872 11 H 0.110 0.890 12 C -0.170 4.170 13 C 0.069 3.931 14 H 0.094 0.906 15 O -0.364 6.364 16 C 0.080 3.920 17 C -0.176 4.176 18 C -0.152 4.152 19 C -0.141 4.141 20 S 0.102 5.898 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.386 0.614 26 H -0.261 1.261 27 H -0.256 1.256 28 H 0.413 0.587 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -1.423 -0.842 2.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.347 4.347 3 C -0.028 4.028 4 C -0.149 4.149 5 O -0.351 6.351 6 Si 0.613 3.387 7 N -0.277 5.277 8 C -0.051 4.051 9 N -0.321 5.321 10 C 0.022 3.978 11 H 0.128 0.872 12 C -0.209 4.209 13 C 0.010 3.990 14 H 0.111 0.889 15 O -0.282 6.282 16 C 0.022 3.978 17 C -0.233 4.233 18 C -0.209 4.209 19 C -0.179 4.179 20 S 0.350 5.650 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.120 0.880 24 H 0.098 0.902 25 H 0.234 0.766 26 H -0.186 1.186 27 H -0.181 1.181 28 H 0.252 0.748 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.012 -2.679 -0.553 2.736 hybrid contribution -0.160 0.142 -0.295 0.364 sum -0.172 -2.537 -0.848 2.681 Atomic orbital electron populations 1.20305 0.86422 1.03775 1.02828 1.25163 1.01421 0.92430 1.15638 1.18928 0.86323 0.95088 1.02457 1.24029 0.98717 0.96823 0.95378 1.86366 1.51202 1.36955 1.60618 0.96231 0.77538 0.84353 0.80625 1.65589 1.17306 1.16791 1.27965 1.23278 0.91997 0.91219 0.98580 1.43912 1.01730 1.06517 1.79935 1.22353 0.97882 0.79649 0.97927 0.87192 1.24136 0.99080 1.00320 0.97410 1.23422 0.83942 0.97703 0.93962 0.88856 1.87991 1.30795 1.31049 1.78400 1.22230 0.96682 0.84485 0.94394 1.22335 1.01902 1.02565 0.96544 1.21889 0.93968 1.02225 1.02861 1.23624 0.95728 0.99599 0.98960 1.83878 0.96395 1.10583 1.74123 0.91374 0.91933 0.88031 0.90250 0.76596 1.18640 1.18150 0.74793 0.90358 0.88278 0.92035 0.91528 0.92440 0.91712 0.91913 0.91062 0.91695 0.88111 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.11 9.97 36.01 0.36 0.25 16 2 C -0.22 -0.85 6.49 -36.02 -0.23 -1.08 16 3 C 0.10 0.49 6.03 -84.18 -0.51 -0.01 16 4 C -0.04 -0.07 2.72 36.00 0.10 0.03 16 5 O -0.54 -0.24 10.24 -35.23 -0.36 -0.60 16 6 Si 0.71 1.25 31.87 -169.99 -5.42 -4.17 16 7 N -0.55 -3.26 8.60 -11.36 -0.10 -3.36 16 8 C 0.32 1.26 8.24 -87.68 -0.72 0.53 16 9 N -0.68 -1.01 5.51 -54.99 -0.30 -1.31 16 10 C 0.13 -0.09 4.23 -67.12 -0.28 -0.38 16 11 H 0.11 -0.14 7.06 -51.93 -0.37 -0.51 16 12 C -0.17 0.13 7.71 -25.92 -0.20 -0.07 16 13 C 0.07 -0.07 4.26 -25.92 -0.11 -0.18 16 14 H 0.09 -0.23 7.45 -51.93 -0.39 -0.62 16 15 O -0.36 -0.37 10.00 -35.23 -0.35 -0.73 16 16 C 0.08 -0.03 3.33 -26.73 -0.09 -0.12 16 17 C -0.18 0.13 9.53 37.16 0.35 0.49 16 18 C -0.15 0.11 9.56 37.16 0.36 0.47 16 19 C -0.14 0.18 7.66 -25.92 -0.20 -0.02 16 20 S 0.10 0.25 21.69 -107.50 -2.33 -2.08 16 21 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 22 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 23 H 0.10 0.16 5.71 -51.93 -0.30 -0.14 16 24 H 0.08 0.00 7.96 -51.93 -0.41 -0.41 16 25 H 0.39 -1.87 8.74 45.56 0.40 -1.47 16 26 H -0.26 -1.58 7.11 56.52 0.40 -1.18 16 27 H -0.26 -1.36 7.11 56.52 0.40 -0.96 16 28 H 0.41 0.47 8.85 -40.82 -0.36 0.10 16 29 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 30 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 31 H 0.06 -0.09 7.42 -51.93 -0.39 -0.48 16 32 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 33 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 34 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 36 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 37 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 38 H 0.10 -0.07 8.12 -51.93 -0.42 -0.49 16 39 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 LS Contribution 332.75 15.07 5.01 5.01 Total: 0.00 -7.47 332.75 -11.11 -18.58 By element: Atomic # 1 Polarization: -5.18 SS G_CDS: -6.08 Total: -11.26 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.18 Total: -0.09 kcal Atomic # 7 Polarization: -4.27 SS G_CDS: -0.40 Total: -4.67 kcal Atomic # 8 Polarization: -0.61 SS G_CDS: -0.71 Total: -1.32 kcal Atomic # 14 Polarization: 1.25 SS G_CDS: -5.42 Total: -4.17 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -2.33 Total: -2.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -7.47 -11.11 -18.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905400_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.633 kcal (2) G-P(sol) polarization free energy of solvation -7.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds